ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK122000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
2dbj|AK120169.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
3dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
5dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
6ref|XM_364735.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.39
7emb|Z84469.1|HS390O13 Human DNA sequence from clone RP3-390O13 o... 42 1.5
8emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chrom... 42 1.5
9emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chro... 42 1.5
10gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, co... 42 1.5
11gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosom... 42 1.5
12emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chro... 42 1.5
13emb|AL929254.12| Mouse DNA sequence from clone RP23-456I1 on chr... 42 1.5
14emb|AL691401.1|SPAPB15E9 S.pombe chromosome I cosmid pB15E9 42 1.5
15gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 6.1
16emb|CR788254.10| Zebrafish DNA sequence from clone DKEY-82K12 in... 40 6.1
17gb|AC138299.14| Mus musculus chromosome 18, clone RP23-296E4, co... 40 6.1
18gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome... 40 6.1
19gb|AC097064.2| Homo sapiens chromosome 1 clone RP11-524L19, comp... 40 6.1
20emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, B... 40 6.1
21emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chr... 40 6.1
22emb|AL928721.5| Mouse DNA sequence from clone RP23-402N20 on chr... 40 6.1
23emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chr... 40 6.1

>dbj|AK122000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110I09, full
           insert sequence
          Length = 882

 Score =  184 bits (93), Expect = 2e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                       
Query: 229 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 288
           ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 278 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 337

                                                                       
Query: 289 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 348
           ||||| ||||||||||| ||||||||||||||  | |||||| |||||| ||| ||| | 
Sbjct: 338 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 397

                                                                       
Query: 349 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 408
           ||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 398 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 457

                                                    
Query: 409 ctagaaggtttgtgggtgaagatgggccagtatttgtccac 449
            |||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 458 ttagaaggtttatgggtgaaaatgggacaatatttatccac 498



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>dbj|AK120169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031N20, full
           insert sequence
          Length = 1974

 Score =  184 bits (93), Expect = 2e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                       
Query: 229 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 288
           ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 277 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 336

                                                                       
Query: 289 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 348
           ||||| ||||||||||| ||||||||||||||  | |||||| |||||| ||| ||| | 
Sbjct: 337 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 396

                                                                       
Query: 349 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 408
           ||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 397 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 456

                                                    
Query: 409 ctagaaggtttgtgggtgaagatgggccagtatttgtccac 449
            |||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 457 ttagaaggtttatgggtgaaaatgggacaatatttatccac 497



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>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full
           insert sequence
          Length = 2957

 Score =  184 bits (93), Expect = 2e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                       
Query: 229 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 288
           ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 277 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 336

                                                                       
Query: 289 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 348
           ||||| ||||||||||| ||||||||||||||  | |||||| |||||| ||| ||| | 
Sbjct: 337 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 396

                                                                       
Query: 349 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 408
           ||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 397 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 456

                                                    
Query: 409 ctagaaggtttgtgggtgaagatgggccagtatttgtccac 449
            |||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 457 ttagaaggtttatgggtgaaaatgggacaatatttatccac 497



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  143 bits (72), Expect = 6e-31
 Identities = 129/148 (87%)
 Strand = Plus / Minus

                                                                            
Query: 302      aggctgttcagaagagagtgcagtgggttagcgctgttaagaagcacgctatatgggcaa 361
                |||| ||||||||||||||  | |||||| |||||| ||| ||| | ||||||||| |||
Sbjct: 29006932 aggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaa 29006873

                                                                            
Query: 362      agacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagagctagaaggtttgt 421
                | || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 29006872 aaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttat 29006813

                                            
Query: 422      gggtgaagatgggccagtatttgtccac 449
                ||||||| ||||| || ||||| |||||
Sbjct: 29006812 gggtgaaaatgggacaatatttatccac 29006785



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                            
Query: 229      atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 288
                ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 29007103 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 29007044

                                
Query: 289      tacttggactataagg 304
                ||||| ||||||||||
Sbjct: 29007043 tacttcgactataagg 29007028



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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score =  143 bits (72), Expect = 6e-31
 Identities = 129/148 (87%)
 Strand = Plus / Minus

                                                                         
Query: 302   aggctgttcagaagagagtgcagtgggttagcgctgttaagaagcacgctatatgggcaa 361
             |||| ||||||||||||||  | |||||| |||||| ||| ||| | ||||||||| |||
Sbjct: 21919 aggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaa 21860

                                                                         
Query: 362   agacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagagctagaaggtttgt 421
             | || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 21859 aaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttat 21800

                                         
Query: 422   gggtgaagatgggccagtatttgtccac 449
             ||||||| ||||| || ||||| |||||
Sbjct: 21799 gggtgaaaatgggacaatatttatccac 21772



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                         
Query: 229   atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 288
             ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 22090 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 22031

                             
Query: 289   tacttggactataagg 304
             ||||| ||||||||||
Sbjct: 22030 tacttcgactataagg 22015



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>ref|XM_364735.1| Magnaporthe grisea 70-15 hypothetical protein (MG09580.4) partial
           mRNA
          Length = 1335

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 ggcgcgggcagagaagaaaagc 139
           ||||||||||||||||||||||
Sbjct: 63  ggcgcgggcagagaagaaaagc 84



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>emb|Z84469.1|HS390O13 Human DNA sequence from clone RP3-390O13 on chromosome Xp11 Contains
             the 5' end of a novel gene, the 3' end of the PRKWNK3 for
             lysine deficient protein kinase 3, a ribosomal protein L7A
             (RPL7A) pseudogene and two CpG islands, complete sequence
          Length = 144676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   ggcagagaagaaaagcttact 144
             |||||||||||||||||||||
Sbjct: 92118 ggcagagaagaaaagcttact 92138



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>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete
              sequence
          Length = 194230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     ttcctgctctctcttttttct 45
              |||||||||||||||||||||
Sbjct: 154219 ttcctgctctctcttttttct 154199



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>emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chromosome 11 Contains
            two novel genes, the Chrne gene for cholinergic receptor
            nicotinic epsilon polypeptide, genes 4930544D05Rik,
            C730027E14Rik and LOC327956, the gene for
            mitogen-activated protein kinase kinase kinase kinase 6
            (Map4k6-pending), the Pld2 gene for phospholipase D2, the
            Psmb6 gene for proteasome (prosome, macropain) subunit
            beta type 6, a ribosomal protein L34 pseudogene, the 3'
            end of gene 2010003F10Rik and three CpG islands, complete
            sequence
          Length = 123943

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 25   ttcctgctctctcttttttct 45
            |||||||||||||||||||||
Sbjct: 3377 ttcctgctctctcttttttct 3397



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>gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, complete sequence
          Length = 159942

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 31     ctctctcttttttcttctggctatt 55
              ||||||||||||| |||||||||||
Sbjct: 103884 ctctctcttttttattctggctatt 103860



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>gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosome 13, complete
             sequence
          Length = 157088

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    cttttttcttctggctattct 57
             |||||||||||||||||||||
Sbjct: 82276 cttttttcttctggctattct 82256



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>emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chromosome 2, complete
              sequence
          Length = 195442

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 421    tgggtgaagatgggccagtatttgt 445
              |||| ||||||||||||||||||||
Sbjct: 171149 tgggggaagatgggccagtatttgt 171173



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>emb|AL929254.12| Mouse DNA sequence from clone RP23-456I1 on chromosome 2, complete
             sequence
          Length = 222104

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 421   tgggtgaagatgggccagtatttgt 445
             |||| ||||||||||||||||||||
Sbjct: 20321 tgggggaagatgggccagtatttgt 20345



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>emb|AL691401.1|SPAPB15E9 S.pombe chromosome I cosmid pB15E9
          Length = 12573

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 31   ctctctcttttttcttctggctattctct 59
            |||||||||||||||| ||||||| ||||
Sbjct: 6000 ctctctcttttttcttgtggctatcctct 6028



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     attctctcgcgcacgcgccg 72
              ||||||||||||||||||||
Sbjct: 407474 attctctcgcgcacgcgccg 407455



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>emb|CR788254.10| Zebrafish DNA sequence from clone DKEY-82K12 in linkage group 2,
             complete sequence
          Length = 227206

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ctgctctctcttttttcttc 47
             ||||||||||||||||||||
Sbjct: 63084 ctgctctctcttttttcttc 63103



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>gb|AC138299.14| Mus musculus chromosome 18, clone RP23-296E4, complete sequence
          Length = 257153

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     cttcctgctctctctttttt 43
              ||||||||||||||||||||
Sbjct: 132413 cttcctgctctctctttttt 132432



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>gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome 2, complete sequence
          Length = 199446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ctgctctctcttttttcttc 47
             ||||||||||||||||||||
Sbjct: 87173 ctgctctctcttttttcttc 87154



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>gb|AC097064.2| Homo sapiens chromosome 1 clone RP11-524L19, complete sequence
          Length = 183425

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    cttcctgctctctcttttttcttc 47
             |||||| |||||||||||||||||
Sbjct: 44650 cttccttctctctcttttttcttc 44673



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>emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project)
          Length = 80088

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    tctctcttttttcttctggctatt 55
             ||||||||||||||| ||||||||
Sbjct: 20874 tctctcttttttcttatggctatt 20897



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>emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chromosome 4, complete
              sequence
          Length = 226546

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     ctgctctctcttttttcttc 47
              ||||||||||||||||||||
Sbjct: 166166 ctgctctctcttttttcttc 166147



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>emb|AL928721.5| Mouse DNA sequence from clone RP23-402N20 on chromosome 2, complete
            sequence
          Length = 79405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ctgctctctcttttttcttc 47
            ||||||||||||||||||||
Sbjct: 8007 ctgctctctcttttttcttc 7988



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>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete
             sequence
          Length = 159617

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   cttactgccctgctaggagc 158
             ||||||||||||||||||||
Sbjct: 72606 cttactgccctgctaggagc 72587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,624,811
Number of Sequences: 3902068
Number of extensions: 4624811
Number of successful extensions: 75518
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75436
Number of HSP's gapped (non-prelim): 82
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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