ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194626.1| Oryza sativa (japonica cultivar-group) putative... 125 9e-26
2gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 125 9e-26
3gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, c... 125 9e-26
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 125 9e-26
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 125 9e-26
6gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome... 44 0.28
7gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complet... 44 0.28
8gb|AC121974.3| Mus musculus BAC clone RP24-285E14 from chromosom... 40 4.3
9gb|AF187000.4| Homo sapiens chromosome 8 clone RP1-316L14 map 8q... 40 4.3
10gb|AC100872.2| Homo sapiens chromosome 8, clone RP11-973F15, com... 40 4.3
11gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 4.3
12gb|DP000004.1| Lemur catta target 1 genomic scaffold 40 4.3
13gb|AC154190.2| Mus musculus BAC clone RP24-465P16 from chromosom... 40 4.3
14gb|AC016405.8|AC016405 Homo sapiens, clone RP11-44N11, complete ... 40 4.3
15gb|AC079437.2| Rattus norvegicus strain Brown Norway chromosome ... 40 4.3
16gb|AC123971.3| Lemur catta clone LB2-255J23, complete sequence 40 4.3
17emb|AL645484.14| Mouse DNA sequence from clone RP23-38A10 on chr... 40 4.3 
>ref|NM_194626.1| Oryza sativa (japonica cultivar-group) putative DNA2-NAM7 helicase
            family protein (OSJNBa0079B05.7), mRNA
          Length = 4407

 Score =  125 bits (63), Expect = 9e-26
 Identities = 159/191 (83%)
 Strand = Plus / Plus

                                                                        
Query: 135  cagttcaagggcagaccagtctcttctcagagagcagttctaacaggacaaaatactgca 194
            ||||| |||||||||| | | |||||||||||| | ||| |||||||||| ||||||| |
Sbjct: 1147 cagttaaagggcagacaaatttcttctcagagatcggttgtaacaggacagaatactgta 1206

                                                                        
Query: 195  gatcagaagccaatcaacaaaaggtctcttgttccaaaaaagcaagcttcagttaataac 254
            |||||||| ||| ||||||| |||||||||||| | ||||| ||| || |||  ||||||
Sbjct: 1207 gatcagaaaccagtcaacaagaggtctcttgtttccaaaaaacaaactccagcaaataac 1266

                                                                        
Query: 255  acacagtataatgacacatctgttgagcgacttatacgggaagtgacaaatgggcagttc 314
            |  || ||  | ||||| |||||||| |||||||||||||| ||||||| ||   |||||
Sbjct: 1267 atgcaataccaagacacttctgttgaacgacttatacgggaggtgacaagtgacaagttc 1326

                       
Query: 315  tggcacaatcc 325
            |||||||||||
Sbjct: 1327 tggcacaatcc 1337



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 3    gaatctaatggtgatattgagttgggatctcatggcaggtcaaagaaaatgaatgctgaa 62
            ||||| |||||||||  ||||  ||||||||| ||| || ||||||||||||||||||||
Sbjct: 1048 gaatccaatggtgatgctgagacgggatctcaaggccggccaaagaaaatgaatgctgaa 1107

              
Query: 63   ga 64
            ||
Sbjct: 1108 ga 1109
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  125 bits (63), Expect = 9e-26
 Identities = 159/191 (83%)
 Strand = Plus / Minus

                                                                           
Query: 135     cagttcaagggcagaccagtctcttctcagagagcagttctaacaggacaaaatactgca 194
               ||||| |||||||||| | | |||||||||||| | ||| |||||||||| ||||||| |
Sbjct: 1178157 cagttaaagggcagacaaatttcttctcagagatcggttgtaacaggacagaatactgta 1178098

                                                                           
Query: 195     gatcagaagccaatcaacaaaaggtctcttgttccaaaaaagcaagcttcagttaataac 254
               |||||||| ||| ||||||| |||||||||||| | ||||| ||| || |||  ||||||
Sbjct: 1178097 gatcagaaaccagtcaacaagaggtctcttgtttccaaaaaacaaactccagcaaataac 1178038

                                                                           
Query: 255     acacagtataatgacacatctgttgagcgacttatacgggaagtgacaaatgggcagttc 314
               |  || ||  | ||||| |||||||| |||||||||||||| ||||||| ||   |||||
Sbjct: 1178037 atgcaataccaagacacttctgttgaacgacttatacgggaggtgacaagtgacaagttc 1177978

                          
Query: 315     tggcacaatcc 325
               |||||||||||
Sbjct: 1177977 tggcacaatcc 1177967



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                           
Query: 3       gaatctaatggtgatattgagttgggatctcatggcaggtcaaagaaaatgaatgctgaa 62
               ||||| |||||||||  ||||  ||||||||| ||| || ||||||||||||||||||||
Sbjct: 1178256 gaatccaatggtgatgctgagacgggatctcaaggccggccaaagaaaatgaatgctgaa 1178197

                 
Query: 63      ga 64
               ||
Sbjct: 1178196 ga 1178195
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>gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, complete sequence
          Length = 145526

 Score =  125 bits (63), Expect = 9e-26
 Identities = 159/191 (83%)
 Strand = Plus / Minus

                                                                         
Query: 135   cagttcaagggcagaccagtctcttctcagagagcagttctaacaggacaaaatactgca 194
             ||||| |||||||||| | | |||||||||||| | ||| |||||||||| ||||||| |
Sbjct: 62395 cagttaaagggcagacaaatttcttctcagagatcggttgtaacaggacagaatactgta 62336

                                                                         
Query: 195   gatcagaagccaatcaacaaaaggtctcttgttccaaaaaagcaagcttcagttaataac 254
             |||||||| ||| ||||||| |||||||||||| | ||||| ||| || |||  ||||||
Sbjct: 62335 gatcagaaaccagtcaacaagaggtctcttgtttccaaaaaacaaactccagcaaataac 62276

                                                                         
Query: 255   acacagtataatgacacatctgttgagcgacttatacgggaagtgacaaatgggcagttc 314
             |  || ||  | ||||| |||||||| |||||||||||||| ||||||| ||   |||||
Sbjct: 62275 atgcaataccaagacacttctgttgaacgacttatacgggaggtgacaagtgacaagttc 62216

                        
Query: 315   tggcacaatcc 325
             |||||||||||
Sbjct: 62215 tggcacaatcc 62205



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 3     gaatctaatggtgatattgagttgggatctcatggcaggtcaaagaaaatgaatgctgaa 62
             ||||| |||||||||  ||||  ||||||||| ||| || ||||||||||||||||||||
Sbjct: 62494 gaatccaatggtgatgctgagacgggatctcaaggccggccaaagaaaatgaatgctgaa 62435

               
Query: 63    ga 64
             ||
Sbjct: 62434 ga 62433
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  125 bits (63), Expect = 9e-26
 Identities = 159/191 (83%)
 Strand = Plus / Minus

                                                                           
Query: 135     cagttcaagggcagaccagtctcttctcagagagcagttctaacaggacaaaatactgca 194
               ||||| |||||||||| | | |||||||||||| | ||| |||||||||| ||||||| |
Sbjct: 1178157 cagttaaagggcagacaaatttcttctcagagatcggttgtaacaggacagaatactgta 1178098

                                                                           
Query: 195     gatcagaagccaatcaacaaaaggtctcttgttccaaaaaagcaagcttcagttaataac 254
               |||||||| ||| ||||||| |||||||||||| | ||||| ||| || |||  ||||||
Sbjct: 1178097 gatcagaaaccagtcaacaagaggtctcttgtttccaaaaaacaaactccagcaaataac 1178038

                                                                           
Query: 255     acacagtataatgacacatctgttgagcgacttatacgggaagtgacaaatgggcagttc 314
               |  || ||  | ||||| |||||||| |||||||||||||| ||||||| ||   |||||
Sbjct: 1178037 atgcaataccaagacacttctgttgaacgacttatacgggaggtgacaagtgacaagttc 1177978

                          
Query: 315     tggcacaatcc 325
               |||||||||||
Sbjct: 1177977 tggcacaatcc 1177967



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                           
Query: 3       gaatctaatggtgatattgagttgggatctcatggcaggtcaaagaaaatgaatgctgaa 62
               ||||| |||||||||  ||||  ||||||||| ||| || ||||||||||||||||||||
Sbjct: 1178256 gaatccaatggtgatgctgagacgggatctcaaggccggccaaagaaaatgaatgctgaa 1178197

                 
Query: 63      ga 64
               ||
Sbjct: 1178196 ga 1178195
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  125 bits (63), Expect = 9e-26
 Identities = 159/191 (83%)
 Strand = Plus / Minus

                                                                           
Query: 135     cagttcaagggcagaccagtctcttctcagagagcagttctaacaggacaaaatactgca 194
               ||||| |||||||||| | | |||||||||||| | ||| |||||||||| ||||||| |
Sbjct: 1178154 cagttaaagggcagacaaatttcttctcagagatcggttgtaacaggacagaatactgta 1178095

                                                                           
Query: 195     gatcagaagccaatcaacaaaaggtctcttgttccaaaaaagcaagcttcagttaataac 254
               |||||||| ||| ||||||| |||||||||||| | ||||| ||| || |||  ||||||
Sbjct: 1178094 gatcagaaaccagtcaacaagaggtctcttgtttccaaaaaacaaactccagcaaataac 1178035

                                                                           
Query: 255     acacagtataatgacacatctgttgagcgacttatacgggaagtgacaaatgggcagttc 314
               |  || ||  | ||||| |||||||| |||||||||||||| ||||||| ||   |||||
Sbjct: 1178034 atgcaataccaagacacttctgttgaacgacttatacgggaggtgacaagtgacaagttc 1177975

                          
Query: 315     tggcacaatcc 325
               |||||||||||
Sbjct: 1177974 tggcacaatcc 1177964



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                           
Query: 3       gaatctaatggtgatattgagttgggatctcatggcaggtcaaagaaaatgaatgctgaa 62
               ||||| |||||||||  ||||  ||||||||| ||| || ||||||||||||||||||||
Sbjct: 1178253 gaatccaatggtgatgctgagacgggatctcaaggccggccaaagaaaatgaatgctgaa 1178194

                 
Query: 63      ga 64
               ||
Sbjct: 1178193 ga 1178192
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>gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome 7, complete sequence
          Length = 225732

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 304   atgggcagttctggcacaatcc 325
             ||||||||||||||||||||||
Sbjct: 31359 atgggcagttctggcacaatcc 31380
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>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence
          Length = 202833

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 304    atgggcagttctggcacaatcc 325
              ||||||||||||||||||||||
Sbjct: 192877 atgggcagttctggcacaatcc 192898
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>gb|AC121974.3| Mus musculus BAC clone RP24-285E14 from chromosome 16, complete
             sequence
          Length = 159535

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    tcatggcaggtcaaagaaaatgaa 55
             ||||||||||||| ||||||||||
Sbjct: 35205 tcatggcaggtcacagaaaatgaa 35182
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>gb|AF187000.4| Homo sapiens chromosome 8 clone RP1-316L14 map 8q24.2, complete
           sequence
          Length = 129679

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 108 tttccaaagcagcccacaga 127
           ||||||||||||||||||||
Sbjct: 514 tttccaaagcagcccacaga 533
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>gb|AC100872.2| Homo sapiens chromosome 8, clone RP11-973F15, complete sequence
          Length = 195563

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  tttccaaagcagcccacaga 127
            ||||||||||||||||||||
Sbjct: 6663 tttccaaagcagcccacaga 6682
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 180     ggacaaaatactgcagatcagaag 203
               ||||||||| ||||||||||||||
Sbjct: 1231073 ggacaaaatcctgcagatcagaag 1231096
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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     ccaaaaaagcaagcttcagt 247
               ||||||||||||||||||||
Sbjct: 1393352 ccaaaaaagcaagcttcagt 1393333
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>gb|AC154190.2| Mus musculus BAC clone RP24-465P16 from chromosome 16, complete sequence
          Length = 150894

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     tcatggcaggtcaaagaaaatgaa 55
              ||||||||||||| ||||||||||
Sbjct: 145923 tcatggcaggtcacagaaaatgaa 145900
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>gb|AC016405.8|AC016405 Homo sapiens, clone RP11-44N11, complete sequence
          Length = 159153

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    tttccaaagcagcccacaga 127
              ||||||||||||||||||||
Sbjct: 156088 tttccaaagcagcccacaga 156107
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>gb|AC079437.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-275K4,
             complete sequence
          Length = 109809

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agaaaatgaatgctgaagac 65
             ||||||||||||||||||||
Sbjct: 61915 agaaaatgaatgctgaagac 61934
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>gb|AC123971.3| Lemur catta clone LB2-255J23, complete sequence
          Length = 222919

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    ccaaaaaagcaagcttcagt 247
              ||||||||||||||||||||
Sbjct: 216909 ccaaaaaagcaagcttcagt 216890
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>emb|AL645484.14| Mouse DNA sequence from clone RP23-38A10 on chromosome 11, complete
             sequence
          Length = 161787

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   tctcttctcagagagcagtt 173
             ||||||||||||||||||||
Sbjct: 97680 tctcttctcagagagcagtt 97661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,428,632
Number of Sequences: 3902068
Number of extensions: 3428632
Number of successful extensions: 81411
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81323
Number of HSP's gapped (non-prelim): 83
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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