>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score =  150 bits (379), Expect = 7e-37
 Identities = 69/86 (80%), Positives = 81/86 (94%)
 Frame = +1

Query: 124 PSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 303
           P+ S+D K+KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L+
Sbjct: 4   PAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILI 63

Query: 304 KGKKRKDTICIVLADDTCDEPKVRMN 381
           KGKKRKDT+CI LAD+TC+EPK+RMN
Sbjct: 64  KGKKRKDTVCIALADETCEEPKIRMN 89

>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score =  148 bits (374), Expect = 3e-36
 Identities = 71/87 (81%), Positives = 80/87 (91%)
 Frame = +1

Query: 121 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 300
           EP SS D K KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L
Sbjct: 4   EPESS-DSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTIL 62

Query: 301 LKGKKRKDTICIVLADDTCDEPKVRMN 381
           +KGKKRKDT+CI LAD+TC+EPK+RMN
Sbjct: 63  IKGKKRKDTVCIALADETCEEPKIRMN 89

>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score =  147 bits (370), Expect = 8e-36
 Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
 Frame = +1

Query: 112 QQGEPSSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRG 288
           QQGE   S+DPK+ KKD+STAILERKKSPNRLVVDEA NDDNSVV +HP TME+LQLFRG
Sbjct: 3   QQGE---SSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRG 59

Query: 289 DTVLLKGKKRKDTICIVLADDTCDEPKVRMN 381
           DT+L+KGKKRKDTICI LAD+ C+EPK+RMN
Sbjct: 60  DTILIKGKKRKDTICIALADENCEEPKIRMN 90

>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score =  142 bits (357), Expect = 3e-34
 Identities = 67/86 (77%), Positives = 79/86 (91%), Gaps = 1/86 (1%)
 Frame = +1

Query: 127 SSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 303
           + S+D K  KKD+STAILE+KK+ NRLVVDEA NDDNSVV+LHPDTME+LQLFRGDT+L+
Sbjct: 5   AESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILI 64

Query: 304 KGKKRKDTICIVLADDTCDEPKVRMN 381
           KGKKRKDT+CI LAD+TCDEPK+RMN
Sbjct: 65  KGKKRKDTVCIALADETCDEPKIRMN 90

>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score =  140 bits (352), Expect = 1e-33
 Identities = 67/87 (77%), Positives = 76/87 (87%)
 Frame = +1

Query: 121 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 300
           +  SS    AKKD+STAILERKK+ NRLVVDEA NDDNSVVALHP TME+LQLFRGDT+L
Sbjct: 4   QAESSDSKNAKKDFSTAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTIL 63

Query: 301 LKGKKRKDTICIVLADDTCDEPKVRMN 381
           +KGKKRKDT+ I LAD+TCDEPK+RMN
Sbjct: 64  IKGKKRKDTVVIALADETCDEPKIRMN 90

>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  112 bits (280), Expect = 2e-25
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVLADDTCDEPKVRMN 381
           GKKR++ +CIVL+DDTC + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84

>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  112 bits (280), Expect = 2e-25
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVLADDTCDEPKVRMN 381
           GKKR++ +CIVL+DDTC + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84

>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  112 bits (280), Expect = 2e-25
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVLADDTCDEPKVRMN 381
           GKKR++ +CIVL+DDTC + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84

>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  112 bits (280), Expect = 2e-25
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVLADDTCDEPKVRMN 381
           GKKR++ +CIVL+DDTC + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84

>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score =  110 bits (274), Expect = 1e-24
 Identities = 53/85 (62%), Positives = 69/85 (81%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S +D K+  D STAIL++K  PNRL+VDE+ N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 2   ASGSDTKSD-DLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK 60

Query: 307 GKKRKDTICIVLADDTCDEPKVRMN 381
           GKKR++ +CIVL+DDTC + K+RMN
Sbjct: 61  GKKRREAVCIVLSDDTCSDEKIRMN 85

>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score =  102 bits (253), Expect = 3e-22
 Identities = 48/85 (56%), Positives = 66/85 (77%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S  DP+ +   +TAIL RKK  N L+VD+A NDDNSV+A++ +TM++L+LFRGDTVL+K
Sbjct: 11  ASGVDPREEDKTATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVK 70

Query: 307 GKKRKDTICIVLADDTCDEPKVRMN 381
           GKKRKDT+ IVL DD  ++   R+N
Sbjct: 71  GKKRKDTVLIVLIDDELEDGACRIN 95

>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score =  100 bits (248), Expect = 1e-21
 Identities = 50/89 (56%), Positives = 67/89 (75%)
 Frame = +1

Query: 115 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDT 294
           QGE +   D  + +D +TAIL +K+ PN LVVD+ATNDDNSV+ L  +TME LQLFRGDT
Sbjct: 18  QGE-NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDT 76

Query: 295 VLLKGKKRKDTICIVLADDTCDEPKVRMN 381
           V++KGK+RKDT+ IVL D+  ++   R+N
Sbjct: 77  VVVKGKRRKDTVLIVLTDEEMEDGVARIN 105

>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 44/87 (50%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
 Frame = +1

Query: 124 PSSSADPKAKKD-YSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 300
           P+  ++ + K D  STAIL+ K  PNRL+VD++  DDNSV+A+    M+ L LFRGD V+
Sbjct: 5   PTHQSEKEKKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVI 64

Query: 301 LKGKKRKDTICIVLADDTCDEPKVRMN 381
           LKGKKRK+++ I+++D++C   KVRMN
Sbjct: 65  LKGKKRKESVAIIVSDESCPNEKVRMN 91

>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 91.7 bits (226), Expect = 4e-19
 Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
 Frame = +1

Query: 139 DPKAKK--DYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGK 312
           D K KK  + +TAIL+ KK PNRL++D++ NDDNS+V L    M+ L LFRGD+V+LKGK
Sbjct: 9   DEKEKKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGK 68

Query: 313 KRKDTICIVLADDTCDEPKVRMN 381
           KR++T+ IVL  D C   K++MN
Sbjct: 69  KRRETVSIVLNADNCPNDKIKMN 91

>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase|
          Length = 1229

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 175 LERKKSPNRLVVDEAT-NDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLAD 348
           L+  K P   +V+    N DN  + +  + M+ L +  G TVLLKGKK+++ + I   D
Sbjct: 333 LDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLD 391

>MBP1_YEAST (P39678) Transcription factor MBP1 (MBF subunit p120)|
          Length = 833

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +1

Query: 145 KAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKD 324
           K K +Y   +L      N+L+ DE     N+ V    +T+ERL+L +  T+L   +K K 
Sbjct: 714 KQKLEYRQTVLL-----NKLIEDETQATTNNTVEKDNNTLERLELAQELTMLQLQRKNKL 768

Query: 325 TICIVLADDTCDEPKVR 375
           +  +   +D     K R
Sbjct: 769 SSLVKKFEDNAKIHKYR 785

>BBM1_BRANA (Q8L3U3) Protein BABY BOOM 1 (BnBBM1)|
          Length = 579

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 237
           DP A  D S+AI     SP  +VVD  T D+NS
Sbjct: 40  DPTAASDESSAIQTSFPSPFGVVVDAFTRDNNS 72

>POLG_TEV (P04517) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral geno
          Length = 3054

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 118  GEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFR 285
            G+PS+  D       +      K   N+  +    N D+ ++A+HPD  ERL  F+
Sbjct: 2590 GQPSTVVDNTLMVIIAMLYTCEKCGINKEEIVYYVNGDDLLIAIHPDKAERLSRFK 2645

>BBM2_BRANA (Q8LSN2) Protein BABY BOOM 2 (BnBBM2)|
          Length = 579

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 237
           DP A  D S+AI     SP  +V+D  T D+NS
Sbjct: 40  DPTAASDESSAIQTSFPSPFGVVLDAFTRDNNS 72

>DP2L_METTH (O27579) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1092

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 184 KKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADDTCDE 363
           +K   RL    A N   + + +HP TME LQ     T +   +  K   C+V   DT D 
Sbjct: 309 EKGAFRLRYGRARNTGLAAMGVHPATMELLQFLAVGTQMKIERPGKGN-CVVPV-DTIDG 366

Query: 364 PKVRM 378
           P V++
Sbjct: 367 PVVKL 371

>HSLU_COXBU (Q83A94) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 447

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 115 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHP 255
           QGEP++   P  KK+ +T  L RKK  N  + D+    +   V+ HP
Sbjct: 143 QGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEVE---VSAHP 186

>ACDD_METJA (Q57577) Acetyl-CoA decarbonylase/synthase complex delta subunit|
           (ACDS complex delta subunit) (Corrinoid/iron-sulfur
           component small subunit)
          Length = 405

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 130 SSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQL--FRGDTVL 300
           S  DP   +D +  ++E    PNR+V+D  T      +    + M RL+L   +GD ++
Sbjct: 259 SIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSINAMVRLRLNGLKGDELV 317

>Y700_VIBVU (Q8DE96) UPF0307 protein VV1_0700|
          Length = 185

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 121 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 258
           EP  +A  K +  +S  TA+L + ++    +V++  +  + VVAL+PD
Sbjct: 87  EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134

>Y440_VIBVY (Q7MPC4) UPF0307 protein VV0440|
          Length = 185

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 121 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 258
           EP  +A  K +  +S  TA+L + ++    +V++  +  + VVAL+PD
Sbjct: 87  EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,401,576
Number of Sequences: 219361
Number of extensions: 436835
Number of successful extensions: 1374
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)