ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53b10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468072.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2499 Score = 325 bits (164), Expect = 6e-86 Identities = 299/344 (86%) Strand = Plus / Plus Query: 60 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcaaacaaccgaagaggtt 119 ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 16 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaactgaagaggta 75 Query: 120 gcaagagcatttattgctgctacttcagctgccactgtgcaaccaacacggccatctgtc 179 || ||||||||||||||||| |||| || |||||||| || ||||||| |||||||| Sbjct: 76 gcgagagcatttattgctgcagcttctgcagccactgtacagtcaacacgaccatctgtg 135 Query: 180 gtctattcgtctggggaagagagtggcagcccaatgcagaagctgcagcagcaattctcg 239 || || || || | |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 136 gtgtactcttccagagaagagagtggcagcccaatgcagaagctgcaacaacaattttcg 195 Query: 240 aagatcatgaaagggttttcaaatccacccgaagtgtctggaccatacaatccagaggtt 299 |||||| ||||||||||||||| |||| |||||||||||| | ||||| || |||||| Sbjct: 196 aagatcctgaaagggttttcaacgtcacctgaagtgtctggatcttacaacccggaggtt 255 Query: 300 ctcacgacacacaagcggcagtggtcgaggttccagcagaagtcattgggtaataggtgc 359 ||||| ||||| ||||| |||||||| |||||||| | ||||| |||||||||||||| Sbjct: 256 ctcacaacacaaaagcgccagtggtccaggttccaactaaagtcgctgggtaataggtgc 315 Query: 360 atcaaagaaccatcacatcttttcgagagcatagtgattgttgg 403 |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 316 atcagagaaccatcacatcttttcgagagcattgtgattgttgg 359
>dbj|AK067308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100G23, full insert sequence Length = 3493 Score = 325 bits (164), Expect = 6e-86 Identities = 299/344 (86%) Strand = Plus / Plus Query: 60 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcaaacaaccgaagaggtt 119 ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 390 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaactgaagaggta 449 Query: 120 gcaagagcatttattgctgctacttcagctgccactgtgcaaccaacacggccatctgtc 179 || ||||||||||||||||| |||| || |||||||| || ||||||| |||||||| Sbjct: 450 gcgagagcatttattgctgcagcttctgcagccactgtacagtcaacacgaccatctgtg 509 Query: 180 gtctattcgtctggggaagagagtggcagcccaatgcagaagctgcagcagcaattctcg 239 || || || || | |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 510 gtgtactcttccagagaagagagtggcagcccaatgcagaagctgcaacaacaattttcg 569 Query: 240 aagatcatgaaagggttttcaaatccacccgaagtgtctggaccatacaatccagaggtt 299 |||||| ||||||||||||||| |||| |||||||||||| | ||||| || |||||| Sbjct: 570 aagatcctgaaagggttttcaacgtcacctgaagtgtctggatcttacaacccggaggtt 629 Query: 300 ctcacgacacacaagcggcagtggtcgaggttccagcagaagtcattgggtaataggtgc 359 ||||| ||||| ||||| |||||||| |||||||| | ||||| |||||||||||||| Sbjct: 630 ctcacaacacaaaagcgccagtggtccaggttccaactaaagtcgctgggtaataggtgc 689 Query: 360 atcaaagaaccatcacatcttttcgagagcatagtgattgttgg 403 |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 690 atcagagaaccatcacatcttttcgagagcattgtgattgttgg 733
>ref|XM_468073.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1281 Score = 244 bits (123), Expect = 2e-61 Identities = 237/275 (86%) Strand = Plus / Plus Query: 60 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcaaacaaccgaagaggtt 119 ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 240 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaactgaagaggta 299 Query: 120 gcaagagcatttattgctgctacttcagctgccactgtgcaaccaacacggccatctgtc 179 || ||||||||||||||||| |||| || |||||||| || ||||||| |||||||| Sbjct: 300 gcgagagcatttattgctgcagcttctgcagccactgtacagtcaacacgaccatctgtg 359 Query: 180 gtctattcgtctggggaagagagtggcagcccaatgcagaagctgcagcagcaattctcg 239 || || || || | |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 360 gtgtactcttccagagaagagagtggcagcccaatgcagaagctgcaacaacaattttcg 419 Query: 240 aagatcatgaaagggttttcaaatccacccgaagtgtctggaccatacaatccagaggtt 299 |||||| ||||||||||||||| |||| |||||||||||| | ||||| || |||||| Sbjct: 420 aagatcctgaaagggttttcaacgtcacctgaagtgtctggatcttacaacccggaggtt 479 Query: 300 ctcacgacacacaagcggcagtggtcgaggttcca 334 ||||| ||||| ||||| |||||||| |||||||| Sbjct: 480 ctcacaacacaaaagcgccagtggtccaggttcca 514
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 244 bits (123), Expect = 2e-61 Identities = 237/275 (86%) Strand = Plus / Minus Query: 60 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcaaacaaccgaagaggtt 119 ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 32887648 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaactgaagaggta 32887589 Query: 120 gcaagagcatttattgctgctacttcagctgccactgtgcaaccaacacggccatctgtc 179 || ||||||||||||||||| |||| || |||||||| || ||||||| |||||||| Sbjct: 32887588 gcgagagcatttattgctgcagcttctgcagccactgtacagtcaacacgaccatctgtg 32887529 Query: 180 gtctattcgtctggggaagagagtggcagcccaatgcagaagctgcagcagcaattctcg 239 || || || || | |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 32887528 gtgtactcttccagagaagagagtggcagcccaatgcagaagctgcaacaacaattttcg 32887469 Query: 240 aagatcatgaaagggttttcaaatccacccgaagtgtctggaccatacaatccagaggtt 299 |||||| ||||||||||||||| |||| |||||||||||| | ||||| || |||||| Sbjct: 32887468 aagatcctgaaagggttttcaacgtcacctgaagtgtctggatcttacaacccggaggtt 32887409 Query: 300 ctcacgacacacaagcggcagtggtcgaggttcca 334 ||||| ||||| ||||| |||||||| |||||||| Sbjct: 32887408 ctcacaacacaaaagcgccagtggtccaggttcca 32887374 Score = 97.6 bits (49), Expect = 3e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 347 gggtaataggtgcatcaaagaaccatcacatcttttcgagagcatagtgattgttgg 403 ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 32885869 gggtaataggtgcatcagagaaccatcacatcttttcgagagcattgtgattgttgg 32885813
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 244 bits (123), Expect = 2e-61 Identities = 237/275 (86%) Strand = Plus / Minus Query: 60 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcaaacaaccgaagaggtt 119 ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 42389 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaactgaagaggta 42330 Query: 120 gcaagagcatttattgctgctacttcagctgccactgtgcaaccaacacggccatctgtc 179 || ||||||||||||||||| |||| || |||||||| || ||||||| |||||||| Sbjct: 42329 gcgagagcatttattgctgcagcttctgcagccactgtacagtcaacacgaccatctgtg 42270 Query: 180 gtctattcgtctggggaagagagtggcagcccaatgcagaagctgcagcagcaattctcg 239 || || || || | |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 42269 gtgtactcttccagagaagagagtggcagcccaatgcagaagctgcaacaacaattttcg 42210 Query: 240 aagatcatgaaagggttttcaaatccacccgaagtgtctggaccatacaatccagaggtt 299 |||||| ||||||||||||||| |||| |||||||||||| | ||||| || |||||| Sbjct: 42209 aagatcctgaaagggttttcaacgtcacctgaagtgtctggatcttacaacccggaggtt 42150 Query: 300 ctcacgacacacaagcggcagtggtcgaggttcca 334 ||||| ||||| ||||| |||||||| |||||||| Sbjct: 42149 ctcacaacacaaaagcgccagtggtccaggttcca 42115 Score = 97.6 bits (49), Expect = 3e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 347 gggtaataggtgcatcaaagaaccatcacatcttttcgagagcatagtgattgttgg 403 ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 40610 gggtaataggtgcatcagagaaccatcacatcttttcgagagcattgtgattgttgg 40554
>dbj|AK100528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101F24, full insert sequence Length = 2387 Score = 244 bits (123), Expect = 2e-61 Identities = 237/275 (86%) Strand = Plus / Plus Query: 60 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcaaacaaccgaagaggtt 119 ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 1071 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaactgaagaggta 1130 Query: 120 gcaagagcatttattgctgctacttcagctgccactgtgcaaccaacacggccatctgtc 179 || ||||||||||||||||| |||| || |||||||| || ||||||| |||||||| Sbjct: 1131 gcgagagcatttattgctgcagcttctgcagccactgtacagtcaacacgaccatctgtg 1190 Query: 180 gtctattcgtctggggaagagagtggcagcccaatgcagaagctgcagcagcaattctcg 239 || || || || | |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 1191 gtgtactcttccagagaagagagtggcagcccaatgcagaagctgcaacaacaattttcg 1250 Query: 240 aagatcatgaaagggttttcaaatccacccgaagtgtctggaccatacaatccagaggtt 299 |||||| ||||||||||||||| |||| |||||||||||| | ||||| || |||||| Sbjct: 1251 aagatcctgaaagggttttcaacgtcacctgaagtgtctggatcttacaacccggaggtt 1310 Query: 300 ctcacgacacacaagcggcagtggtcgaggttcca 334 ||||| ||||| ||||| |||||||| |||||||| Sbjct: 1311 ctcacaacacaaaagcgccagtggtccaggttcca 1345
>dbj|AK060140.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G04, full insert sequence Length = 1281 Score = 244 bits (123), Expect = 2e-61 Identities = 237/275 (86%) Strand = Plus / Plus Query: 60 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcaaacaaccgaagaggtt 119 ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 240 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaactgaagaggta 299 Query: 120 gcaagagcatttattgctgctacttcagctgccactgtgcaaccaacacggccatctgtc 179 || ||||||||||||||||| |||| || |||||||| || ||||||| |||||||| Sbjct: 300 gcgagagcatttattgctgcagcttctgcagccactgtacagtcaacacgaccatctgtg 359 Query: 180 gtctattcgtctggggaagagagtggcagcccaatgcagaagctgcagcagcaattctcg 239 || || || || | |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 360 gtgtactcttccagagaagagagtggcagcccaatgcagaagctgcaacaacaattttcg 419 Query: 240 aagatcatgaaagggttttcaaatccacccgaagtgtctggaccatacaatccagaggtt 299 |||||| ||||||||||||||| |||| |||||||||||| | ||||| || |||||| Sbjct: 420 aagatcctgaaagggttttcaacgtcacctgaagtgtctggatcttacaacccggaggtt 479 Query: 300 ctcacgacacacaagcggcagtggtcgaggttcca 334 ||||| ||||| ||||| |||||||| |||||||| Sbjct: 480 ctcacaacacaaaagcgccagtggtccaggttcca 514
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 271 aagtgtctggaccatacaatccaga 295 |||||||||| |||||||||||||| Sbjct: 272726 aagtgtctggtccatacaatccaga 272702
>gb|AC102431.7| Mus musculus chromosome 14, clone RP24-106J1, complete sequence Length = 157923 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 aagtgtctggaccatacaatccaga 295 |||||||||| |||||||||||||| Sbjct: 38289 aagtgtctggtccatacaatccaga 38313
>gb|AC034159.7| Homo sapiens BAC clone RP11-344G13 from 4, complete sequence Length = 202555 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tgtctggaccatacaatccag 294 ||||||||||||||||||||| Sbjct: 196044 tgtctggaccatacaatccag 196024
>gb|AC133896.7| Mus musculus chromosome 5, clone RP24-529E15, complete sequence Length = 187415 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 accatacaatccagaggttc 300 |||||||||||||||||||| Sbjct: 55061 accatacaatccagaggttc 55080
>gb|AC161062.2| Pan troglodytes BAC clone CH251-4H1 from chromosome unknown, complete sequence Length = 181458 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tctggaccatacaatccaga 295 |||||||||||||||||||| Sbjct: 36932 tctggaccatacaatccaga 36951
>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21 Contains a novel pseudogene, a eukaryotic translation initiation factor 1A pseudogene 1 (EIF1AP1), part of a novel gene (LOC284729), a macrophage stimulating 1 (hepatocyte growth factor-like)(MST1) pseudogene and five CpG islands, complete sequence Length = 118067 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gtcgaggttccagcagaagt 342 |||||||||||||||||||| Sbjct: 78270 gtcgaggttccagcagaagt 78289
>gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, complete sequence Length = 138097 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 agagcatagtgattgttggg 404 |||||||||||||||||||| Sbjct: 30548 agagcatagtgattgttggg 30529
>gb|AC090186.7| Homo sapiens chromosome 8, clone RP11-11C20, complete sequence Length = 143753 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 agagcatagtgattgttggg 404 |||||||||||||||||||| Sbjct: 34749 agagcatagtgattgttggg 34768
>ref|NR_002729.1| Homo sapiens macrophage stimulating, pseudogene 9 (MSTP9) on chromosome 1 Length = 4132 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gtcgaggttccagcagaagt 342 |||||||||||||||||||| Sbjct: 960 gtcgaggttccagcagaagt 941
>gb|AC161475.6| Pan troglodytes BAC clone CH251-252J1 from chromosome unknown, complete sequence Length = 177925 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tctggaccatacaatccaga 295 |||||||||||||||||||| Sbjct: 123061 tctggaccatacaatccaga 123080
>dbj|AP001891.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-356E17, complete sequence Length = 210691 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tctggaccatacaatccaga 295 |||||||||||||||||||| Sbjct: 89836 tctggaccatacaatccaga 89855
>gb|AY192149.1| Homo sapiens brain-rescue-factor-1 mRNA, complete cds Length = 4132 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gtcgaggttccagcagaagt 342 |||||||||||||||||||| Sbjct: 960 gtcgaggttccagcagaagt 941
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 atgcagaagctgcagcagca 232 |||||||||||||||||||| Sbjct: 2132182 atgcagaagctgcagcagca 2132201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,357,152 Number of Sequences: 3902068 Number of extensions: 3357152 Number of successful extensions: 63086 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62998 Number of HSP's gapped (non-prelim): 81 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
