ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAGI1_HUMAN (Q96QZ7) Membrane-associated guanylate kinase, WW an... 28 7.3

>MAGI1_HUMAN (Q96QZ7) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 1 (BAI1-associated protein 1)
            (BAP-1) (Membrane-associated guanylate kinase inverted 1)
            (MAGI-1) (Atrophin-1-interacting protein 3) (AIP3) (WW
            domain-containi
          Length = 1491

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +3

Query: 21   PPLRRVALRSVGXXXXXXXKHTHRAD*SPQRAAETEASHRR 143
            P  RR   RS         KH  R D SP+R  E   + RR
Sbjct: 1352 PEKRREGTRSADNTLERREKHEKRRDVSPERRRERSPTRRR 1392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,231,799
Number of Sequences: 219361
Number of extensions: 197939
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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