ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53b07 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... | 144 | 1e-34 | 2 | PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... | 30 | 3.2 | 3 | BSN_RAT (O88778) Bassoon protein | 29 | 5.5 | 4 | VIME_MESAU (P02544) Vimentin | 28 | 7.2 | 5 | VIMB_CARAU (P48673) Vimentin beta | 28 | 7.2 | 6 | VIME_RAT (P31000) Vimentin | 28 | 7.2 | 7 | VIME_PANTR (Q5R1W8) Vimentin | 28 | 7.2 | 8 | VIME_MOUSE (P20152) Vimentin | 28 | 7.2 | 9 | VIME_MACFA (Q4R4X4) Vimentin | 28 | 7.2 | 10 | VIME_HUMAN (P08670) Vimentin | 28 | 7.2 | 11 | VIME_CERAE (P84198) Vimentin | 28 | 7.2 | 12 | STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.... | 28 | 7.2 | 13 | VIME_CRIGR (P48670) Vimentin (Fragment) | 28 | 7.2 |
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>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 144 bits (362), Expect = 1e-34 Identities = 74/92 (80%), Positives = 78/92 (84%) Frame = +3 Query: 156 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 335 MTTDQPVISL LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+ Sbjct: 1 MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60 Query: 336 RERIRYSRDQLLDLRKITDISEQILRLQQEIE 431 RER+RYSRDQLLDLRKITD++EQILRLQQEIE Sbjct: 61 RERVRYSRDQLLDLRKITDVTEQILRLQQEIE 92
>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC| 3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase) (CGS-PDE) (cGSPDE) Length = 941 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +2 Query: 11 RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 151 RSQ P P E +++ FL+ P PP PC S + AL+ G++ Sbjct: 12 RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 28.9 bits (63), Expect = 5.5 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Frame = +3 Query: 87 PAPRRFPVDRAAAVPWSGSGPSAMTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSG 266 P P A P S + P A+ + PV APA +G Sbjct: 2288 PPRPELPAGGAREEPLSTTAPPAVIKEAPVAQ----------------APAPPPGQKPAG 2331 Query: 267 DFLRPHGGGASGVSRIGDLHFETRERIRYSRDQLLDLRKITDISEQI--LRLQQEIE 431 D G G G + +R R ++QLL L + E++ LRLQ+E+E Sbjct: 2332 DAAAGSGSGVLGRPVMEKEEASQEDRQRKQQEQLLQLERERVELEKLRQLRLQEELE 2388
>VIME_MESAU (P02544) Vimentin| Length = 464 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 140 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 188
>VIMB_CARAU (P48673) Vimentin beta| Length = 450 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ + +R DQL++ + ++ E I RL+Q+++ Sbjct: 128 GSSRVGDLYEDEMRELRRQVDQLINEKASVEVDRDNLGENIERLRQKLQ 176
>VIME_RAT (P31000) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 189
>VIME_PANTR (Q5R1W8) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 189
>VIME_MOUSE (P20152) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 189
>VIME_MACFA (Q4R4X4) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQ 189
>VIME_HUMAN (P08670) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 189
>VIME_CERAE (P84198) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQ 189
>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)| (p46Eg265) Length = 407 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 5 GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 97 G Q + + P+EEGKKK L DF G P Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145
>VIME_CRIGR (P48670) Vimentin (Fragment)| Length = 448 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIE 431 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ Sbjct: 124 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIIRLREKLQ 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,601,104 Number of Sequences: 219361 Number of extensions: 698712 Number of successful extensions: 2801 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2800 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
