ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53b05 |
|---|---|
| Clone Library Name | barley_pub |
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 36.6 bits (83), Expect = 0.036 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%) Frame = +2 Query: 176 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 355 MEV L LAG+ QTLS D + + D+ R Sbjct: 1 MEVTEANLQLLAGYLQQTLSADPNVRRPAEKLLESTELQQNYPILLLNLIDKAQMDMTTR 60 Query: 356 LAASVHFKNLLRRRWPKPAD-DADDGDH 436 +A ++ FKN ++R W D D D H Sbjct: 61 VAGAIAFKNYIKRNWAAHLDSDGPDRIH 88
>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 972 Score = 35.8 bits (81), Expect = 0.061 Identities = 27/82 (32%), Positives = 33/82 (40%) Frame = +2 Query: 176 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 355 ME E L L+ F TLSP + + P D Q R Sbjct: 1 MEWNRETLVFLSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTR 60 Query: 356 LAASVHFKNLLRRRWPKPADDA 421 AA+V+FKN LR RW PA D+ Sbjct: 61 HAAAVNFKNHLRSRW-HPAGDS 81
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = -3 Query: 477 GGCALDDDAVVGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSAS 304 G C DA RWSP+ S +RR R L+ + + RR RS R + RS S Sbjct: 422 GRCERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRSRRSKS 479
>CSE1_YEAST (P33307) Importin alpha re-exporter (Chromosome segregation protein| CSE1) Length = 960 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +2 Query: 296 GFXXXXXXXXSSPRHDLQARLAASVHFKNLLRRRWPKPADDADDGDHLPP 445 GF +S L RLA ++ FKN ++R+W ++G+HL P Sbjct: 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD-----ENGNHLLP 79
>SSDH_PONPY (Q6A2H2) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 30.8 bits (68), Expect = 2.0 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 20/78 (25%) Frame = -3 Query: 480 AGGCA------LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEA 361 AGG A L D+ VGGRW P++ AS A LG R R ++ A Sbjct: 48 AGGLAGLSAALLRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---A 104 Query: 360 ARRAWRSWRGEEARPRSA 307 A A+ SWR A+ RS+ Sbjct: 105 AYEAFCSWREVSAKERSS 122
>SSDH_HYLLA (Q3MSM3) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 30.8 bits (68), Expect = 2.0 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 20/78 (25%) Frame = -3 Query: 480 AGGCA------LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEA 361 AGG A L D+ VGGRW P++ AS A LG R R ++ A Sbjct: 48 AGGLAGLSAALLRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---A 104 Query: 360 ARRAWRSWRGEEARPRSA 307 A A+ SWR A+ RS+ Sbjct: 105 AYEAFCSWREVSAKERSS 122
>GUN3_BACSU (P23549) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 435 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 292 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>GUN2_BACSU (P10475) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 435 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 292 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>HEPA_HCMVA (P16827) DNA helicase/primase complex-associated protein| Length = 873 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Frame = +2 Query: 392 RRW---PKPADDADDGDHLPPTTASSSRAHPPA 481 RRW P P DD D +++ ++S+ AHPP+ Sbjct: 389 RRWLLPPLPRDDGDGENNVVEVSSSTGGAHPPS 421
>ITIH2_PIG (O02668) Inter-alpha-trypsin inhibitor heavy chain H2 precursor| (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain 2) Length = 935 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +2 Query: 356 LAASVHFKNLLRRRWPKPADDADD-GDHLPPTTASSSRAH 472 L V F LL R W K + D G ++PPTT S +AH Sbjct: 807 LDQEVSFSVLLHRVWKKHPINVDFLGIYIPPTTKFSPKAH 846
>CNGC4_ARATH (Q94AS9) Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic| nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1) Length = 694 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 368 VHFKNLLRRRWPKPADDADDGDHLPPTTASSSRAHPP 478 + FK + RRWP P D+D + T S+R PP Sbjct: 148 IQFK--IARRWPYPGGDSDGDTNKGGGTRGSTRVAPP 182
>SSDH_PANTR (Q6A2H0) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.9 bits (63), Expect = 7.5 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 20/78 (25%) Frame = -3 Query: 480 AGGCA------LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEA 361 AGG A L D+ VGGRW P++ AS A LG R R ++ A Sbjct: 48 AGGLAGLSAALLRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---A 104 Query: 360 ARRAWRSWRGEEARPRSA 307 A A+ WR A+ RS+ Sbjct: 105 AYEAFCRWREVSAKERSS 122
>SSDH_PANPA (Q3MSM4) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.9 bits (63), Expect = 7.5 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 20/78 (25%) Frame = -3 Query: 480 AGGCA------LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEA 361 AGG A L D+ VGGRW P++ AS A LG R R ++ A Sbjct: 48 AGGLAGLSAALLRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---A 104 Query: 360 ARRAWRSWRGEEARPRSA 307 A A+ WR A+ RS+ Sbjct: 105 AYEAFCCWREVSAKERSS 122
>SSDH_GORGO (Q6A2H1) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.9 bits (63), Expect = 7.5 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 20/78 (25%) Frame = -3 Query: 480 AGGCA------LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEA 361 AGG A L D+ VGGRW P++ AS A LG R R ++ A Sbjct: 48 AGGLAGLSAALLRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---A 104 Query: 360 ARRAWRSWRGEEARPRSA 307 A A+ WR A+ RS+ Sbjct: 105 AYEAFCRWREVSAKERSS 122
>CSE1_SCHPO (O13671) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 967 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +2 Query: 341 DLQARLAASVHFKNLLRRRWPKPADDADDG 430 D+ +LAAS++FKN +++ W D+++G Sbjct: 48 DINIKLAASLYFKNYIKKHW-----DSEEG 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,642,643 Number of Sequences: 219361 Number of extensions: 440031 Number of successful extensions: 1826 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1764 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1824 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
