ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53b04 |
|---|---|
| Clone Library Name | barley_pub |
>DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)| (Dnmt3a) (DNA methyltransferase HsaIIIA) (DNA MTase HsaIIIA) (M.HsaIIIA) Length = 909 Score = 39.7 bits (91), Expect = 0.003 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = -3 Query: 306 DGETPRGSPGQTRTYGEGAATVLPDGDRHVRGSCFLAVSGRGAPGSQAKQR 154 +G G G GEGAA LP+ R V C GRGAP K++ Sbjct: 100 EGSPAGGQKGGAPAEGEGAAETLPEASRAVENGCCTPKEGRGAPAEAGKEQ 150
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 33.1 bits (74), Expect = 0.33 Identities = 21/73 (28%), Positives = 29/73 (39%) Frame = +2 Query: 41 PEPGGRRSQGKLPCPKPSPHATCSTD*LFHTQFHRGRSRCLACDPGAPLPETARKQEPRT 220 P P R ++ +P +P P T PG P P AR + P Sbjct: 267 PRPSSRPARPPIPAARPPPRRT----------------------PGTPRPAAARARAPAG 304 Query: 221 CRSPSGRTVAAPS 259 C SP+ RT +AP+ Sbjct: 305 C-SPARRTPSAPT 316
>IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1| Length = 505 Score = 32.7 bits (73), Expect = 0.43 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 10/69 (14%) Frame = +2 Query: 59 RSQGKLPCPKPSPHATCST----------D*LFHTQFHRGRSRCLACDPGAPLPETARKQ 208 RS P P PSP++ ST +F + + + C+ G P T Q Sbjct: 418 RSSDSTPLPSPSPYSYPSTPLNHFQSSSNSPVFSNNHSKFNTEAVTCEAGMLCPPTIVVQ 477 Query: 209 EPRTCRSPS 235 P TC SP+ Sbjct: 478 CPSTCASPN 486
>KRF4_COLLI (Q9PSV3) Feather keratin Cos2-3 (F-ker)| Length = 100 Score = 31.6 bits (70), Expect = 0.95 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = +2 Query: 158 CLACDPGAPLPETARKQEPRTCRSPSGRTVAAPSPYVLV*PGDPRGVSPSHWVV 319 CL C P P P EP + S V PS V++ PG P + VV Sbjct: 6 CLPCQPCGPTPLANSCNEPCVRQCQSSNVVIEPSSVVVILPGPILSSFPQNTVV 59
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/76 (27%), Positives = 25/76 (32%) Frame = +2 Query: 35 PVPEPGGRRSQGKLPCPKPSPHATCSTD*LFHTQFHRGRSRCLACDPGAPLPETARKQEP 214 P P P S P PKP P C P P P+ A EP Sbjct: 101 PAPSPSPCPSPPPKPQPKPVPPPACPPT------------------PPKPQPKPAPPPEP 142 Query: 215 RTCRSPSGRTVAAPSP 262 + P+ + V PSP Sbjct: 143 KPAPPPAPKPVPCPSP 158
>KRF3_COLLI (O93500) Feather keratin Cos2-2 (F-ker)| Length = 100 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +2 Query: 158 CLACDPGAPLPETARKQEPRTCRSPSGRTVAAPSPYVLV*PGDPRGVSPSHWVV 319 CL C P P P EP + S + PS V++ PG P + VV Sbjct: 6 CLPCQPCGPTPLANSCNEPCVRQCQSSSVIIEPSSVVVILPGPILSSFPQNTVV 59
>KRF1_COLLI (Q9PRI5) Feather keratin Cos1-1/Cos1-3/Cos2-1 (F-ker)| Length = 100 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +2 Query: 158 CLACDPGAPLPETARKQEPRTCRSPSGRTVAAPSPYVLV*PGDPRGVSPSHWVV 319 C+ C P P P EP + + V PSP V+ PG P + VV Sbjct: 6 CVPCQPCGPTPLANSCNEPCVRQCQNSTVVIEPSPVVVTLPGPILSSFPQNTVV 59
>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)| Length = 1522 Score = 30.4 bits (67), Expect = 2.1 Identities = 23/75 (30%), Positives = 31/75 (41%) Frame = -1 Query: 311 NATARRHEGPPVKRERTAKAQRRFCPMATGMSAVPVSSLFPEEERRDRKPSNGCVRGETA 132 NA A + V + +A A + P AT SA+P F +P+ RGE A Sbjct: 418 NAPAETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRGEPA 477 Query: 131 CGRVNPSNTLRAATA 87 N S R AT+ Sbjct: 478 VQTRNHSKRTRTATS 492
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype 1)| (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 30.0 bits (66), Expect = 2.8 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +2 Query: 80 CPKPSPHATCSTD*LFHT-QFHRGRSRCLACDPGAPLPETARKQEPRTCRSPSGRTVAAP 256 CP P+ D + H Q H + A PGA P T ++ PR SP GR +P Sbjct: 870 CPYCPPNGRVRGDLVEHLRQAHGLQVAKPAASPGAE-PRTPAERAPRD--SPDGRAPRSP 926 Query: 257 SPYVLV*PGDP 289 SP P DP Sbjct: 927 SPAPENTPSDP 937
>KRF2_COLLI (O93499) Feather keratin Cos1-2 (F-ker)| Length = 100 Score = 30.0 bits (66), Expect = 2.8 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = +2 Query: 158 CLACDPGAPLPETARKQEPRTCRSPSGRTVAAPSPYVLV*PGDPRGVSPSHWVV 319 C+ C P P P EP + S PSP V+ PG P + VV Sbjct: 6 CVPCQPCGPTPLANSCNEPCVRQCQSSTIAIQPSPVVVTLPGPILSSFPQNTVV 59
>CCNF_HUMAN (P41002) G2/mitotic-specific cyclin-F| Length = 786 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +2 Query: 89 PSPHATCSTD*LFHTQ--FHRGRSRCLACDPGAPLPETARKQE 211 P P + S D HTQ H+ R CL C P +P PE++ Q+ Sbjct: 722 PQPTSVLSLDSDSHTQPCHHQARKSCLQCRPPSP-PESSVPQQ 763
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 29.6 bits (65), Expect = 3.6 Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Frame = +2 Query: 2 SSHMDYYQAFVPVPEPGGRRSQGKLPCPKPSPHATCST-----D*LFHTQFHRGRSRCLA 166 S+ M + + P P PG R + P P S A + H GR Sbjct: 167 STGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQRLHPGRE---- 222 Query: 167 CDPGAPLPETARKQEPRTCRSPSGRTVAAPSPYVLV*PGDPRGVS 301 P AP P PSG+++A P P PG P G S Sbjct: 223 -GPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPS 266
>ZN408_HUMAN (Q9H9D4) Zinc finger protein 408 (PR-domain zinc finger protein 17)| Length = 720 Score = 29.6 bits (65), Expect = 3.6 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Frame = +2 Query: 77 PCPKPSPHATCSTD*LFHTQFHRGRS--RCLACDPGAPLPETARKQE----PRTCRSPSG 238 PCP+ T +T H + H RC C G LP++ R+ + P SP Sbjct: 580 PCPQCGRAYTLATKLRRHLKSHLEDKPYRCPTCGMGYTLPQSLRRHQLSHRPEAPCSPPS 639 Query: 239 RTVAAPSPYVLV*PGDPR 292 AA P V++ +P+ Sbjct: 640 VPSAASEPTVVLLQAEPQ 657
>AF10_MOUSE (O54826) Protein AF-10| Length = 1068 Score = 29.6 bits (65), Expect = 3.6 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Frame = +2 Query: 128 HTQFHRGRSRCLACDPG------APLPETARKQEPRTCRSPSGRTVAAPSPYVLV*PGDP 289 H+ RGR +PG +P P+ + P + +SPSG +V +P + D Sbjct: 323 HSSGQRGRKPGAGRNPGTAVSASSPFPQGSFSGTPGSVKSPSGSSVQSPQDLLSFTDSDL 382 Query: 290 RGVSPSH 310 R S +H Sbjct: 383 RSDSYTH 389
>KRFA_CHICK (P20308) Feather keratin IV (Keratin gene A protein) (F-ker)| Length = 97 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = +2 Query: 167 CDPGAPLPETARKQEPRTCRSPSGRTVAAPSPYVLV*PG 283 C P AP P EP + R V PSP V+ PG Sbjct: 6 CRPSAPTPLANSCNEPCVRQCQDSRVVIQPSPVVVTLPG 44
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 29.3 bits (64), Expect = 4.7 Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Frame = +2 Query: 35 PVPEPGGRRSQGKLPCPKPSPHATCSTD*LFH-TQFHRGRSRCLACDPGAPLPETARKQE 211 P+P P RRS P P PSP + S T R R P +P P + + Sbjct: 150 PIPHPP-RRSLPSPPSPSPSPSPSPSPSPSPRSTPIPHPRKR----SPASPSPSPSLSKS 204 Query: 212 PRTCRSPSGRTVAAPSP 262 P SPS APSP Sbjct: 205 PSPSESPS----LAPSP 217
>SIX4_MOUSE (Q61321) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)| (Skeletal muscle-specific ARE binding protein AREC3) Length = 775 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 254 AQRRFCPMATGMSAVPVSSLFPEEERRDRKPSNGCVRGET 135 A++R TG+S VS+ F +RDR PS + E+ Sbjct: 244 AEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSES 283
>TF65_HUMAN (Q04206) Transcription factor p65 (Nuclear factor NF-kappa-B p65| subunit) Length = 551 Score = 29.3 bits (64), Expect = 4.7 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Frame = +2 Query: 59 RSQGKLPCPKPSPHA-TCSTD*LFHTQFHR---GRSRCLACDPGAPLPETARKQEPRTCR 226 RS +P P P P+ T S + + +F + AP P Q P Sbjct: 336 RSSASVPKPAPQPYPFTSSLSTINYDEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAP 395 Query: 227 SPS--GRTVAAPSPYVLV*PGDPRGVSP 304 +P+ AP+P ++ PG P+ V+P Sbjct: 396 APAMVSALAQAPAPVPVLAPGPPQAVAP 423
>SIX4_HUMAN (Q9UIU6) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)| Length = 760 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 254 AQRRFCPMATGMSAVPVSSLFPEEERRDRKPSNGCVRGET 135 A++R TG+S VS+ F +RDR PS + E+ Sbjct: 230 AEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSES 269
>SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET) Length = 1291 Score = 29.3 bits (64), Expect = 4.7 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Frame = +2 Query: 215 RTCRSPSGRTVAAPSPYVLV*PGDP---------RGVSPSHWVVLYKLYLFPSIGIFHAY 367 +T RSP G T +AP+P L P P PS+ + KL+ P + + Sbjct: 524 QTYRSPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCL 583 Query: 368 PACLPLEN 391 P+ N Sbjct: 584 SRVRPMRN 591
>IE63_HCMVA (P16749) Transcriptional regulator IE63 homolog (Protein UL69)| Length = 744 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = -1 Query: 296 RHEGPPV----KRERTAKAQRRFCPMATGMSAVPVSSLFPEEERRDRKPSNGCVRGETA 132 RH+ P + +RER A+ RRFC + PV P + RR+R P++ R A Sbjct: 8 RHDAPSLSSLSERERRARRARRFC-----LDYEPV----PRKFRRERSPTSPSTRNGAA 57
>APEL_MOUSE (Q9R0R4) Apelin precursor (APJ endogenous ligand) [Contains:| Apelin-36; Apelin-31; Apelin-28; Apelin-13] Length = 77 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -3 Query: 96 GDGLGQGSLPWLLRPPGSGTGTNAW 22 G GL +GS+ +L++P S TG AW Sbjct: 31 GTGLEEGSMRYLVKPRTSRTGPGAW 55
>IF2_CORJK (Q4JV51) Translation initiation factor IF-2| Length = 922 Score = 28.9 bits (63), Expect = 6.2 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Frame = +2 Query: 35 PVPEPGGRRSQ------GKLPCPKPSPHATCSTD*LFHTQFHRGRSRCLACDPGA-PLPE 193 P P+P + + G P PKP P +T+ + G PG P P+ Sbjct: 71 PGPKPAAKAAPKAAAKPGPKPGPKPGPQPVKNTNPVAGA----GTRPTSTVKPGEKPAPK 126 Query: 194 TARKQEPRTCRSPSGRTVAAPSP 262 K P+T P+ + A P P Sbjct: 127 PGAKPAPKTAAKPTPKPGAKPGP 149
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = +2 Query: 41 PEPGGRRSQGKLPCPKPSPHATCSTD*LFHTQFHRGRS--RCLACDPGAPLP 190 PEP S P P P P A C+ + Q+ G RC AC GA LP Sbjct: 101 PEP----SAPSAPPPAPEPSAPCAPE-----QWPAGEEPVRCDACPEGAALP 143
>ALG10_KLULA (Q6CN27) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 533 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 293 GVSPSHWVVLYKLYLFPSIGIFHAYPACLPL 385 GV WVVL LYLF ++G + C PL Sbjct: 150 GVIVWPWVVLRPLYLFNALGFWPVTLMCFPL 180
>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 521 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/52 (34%), Positives = 20/52 (38%) Frame = +2 Query: 35 PVPEPGGRRSQGKLPCPKPSPHATCSTD*LFHTQFHRGRSRCLACDPGAPLP 190 PVP PG P P P P A + H + LAC PG P P Sbjct: 44 PVPSPG--------PLPPPPPPALAE-------RAHAALAAALACAPGPPPP 80
>KCNN1_HUMAN (Q92952) Small conductance calcium-activated potassium channel| protein 1 (SK1) Length = 561 Score = 28.5 bits (62), Expect = 8.1 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 11/80 (13%) Frame = +2 Query: 89 PSPHATCS-----TD*LFHTQFHRGR-SRCLACDPGA-----PLPETARKQEPRTCRSPS 235 P P A CS T + ++ + G R L PGA P PE +P SP Sbjct: 2 PGPRAACSEPNPCTQVVMNSHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPP--HSPG 59 Query: 236 GRTVAAPSPYVLV*PGDPRG 295 + V A S PG PRG Sbjct: 60 LQVVVAKSEPARPSPGSPRG 79
>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 19) (ADAM-TS 19) (ADAM-TS19) Length = 1207 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +2 Query: 32 VPVPEPGGRRSQGKLPCPKPSPHATCSTD*LFHTQFHRGRSRCLACDPGAP 184 VP+ EP RS+ +L P PS + L + RG S A PGAP Sbjct: 89 VPLEEPVEGRSESRLRPPPPSEGE--EDEELESQELPRGSSGAAALSPGAP 137
>RTN_ECOLI (P76446) Protein rtn| Length = 518 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/77 (25%), Positives = 27/77 (35%) Frame = -1 Query: 419 LITSAIGINDFQVADXXXXXXXXXXXXXGKAYKEQPNATARRHEGPPVKRERTAKAQRRF 240 LIT D AD + P TAR V+ K ++ F Sbjct: 46 LITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTF 105 Query: 239 CPMATGMSAVPVSSLFP 189 C ATG +P++ L P Sbjct: 106 CSSATGEMDIPLNELIP 122
>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 25.8 bits (55), Expect(2) = 9.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 179 APLPETARKQEPRTCRSPSGRTVAAPSP 262 AP P A Q+P+ R +GR +AP P Sbjct: 93 APKPSRAPPQQPQPPRMQTGRGGSAPRP 120 Score = 20.8 bits (42), Expect(2) = 9.4 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +2 Query: 35 PVPEPGGRRSQGKLPCPKPS 94 P P + S+ + P PKPS Sbjct: 78 PPPPEERQESRSQTPAPKPS 97
>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 25.8 bits (55), Expect(2) = 9.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 179 APLPETARKQEPRTCRSPSGRTVAAPSP 262 AP P A Q+P+ R +GR +AP P Sbjct: 93 APKPSRAPPQQPQPPRMQTGRGGSAPRP 120 Score = 20.8 bits (42), Expect(2) = 9.4 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +2 Query: 35 PVPEPGGRRSQGKLPCPKPS 94 P P + S+ + P PKPS Sbjct: 78 PPPPEERQESRSQTPAPKPS 97
>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 992 Score = 25.8 bits (55), Expect(2) = 9.5 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 179 APLPETARKQEPRTCRSPSGRTVAAPSP 262 AP P A Q+P+ R +GR +AP P Sbjct: 92 APKPSRAPPQQPQPPRMQTGRGGSAPRP 119 Score = 20.8 bits (42), Expect(2) = 9.5 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +2 Query: 35 PVPEPGGRRSQGKLPCPKPS 94 P P + S+ + P PKPS Sbjct: 77 PPPPEERQESRSQTPAPKPS 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,453,199 Number of Sequences: 219361 Number of extensions: 1694035 Number of successful extensions: 5800 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5284 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5748 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
