ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
2gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 58 3e-05
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
5gb|AF456245.1| Oryza sativa (japonica cultivar-group) NBS-LRR-li... 44 0.39
6gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 44 0.39
7dbj|AK068380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
8gb|AY340168.1| Acanthophis pyrrhus isolate 1133 NADH dehydrogena... 42 1.5
9gb|AY340167.1| Acanthophis cf. laevis isolate 276 NADH dehydroge... 42 1.5
10gb|AY340166.1| Acanthophis cf. laevis isolate 1252 NADH dehydrog... 42 1.5
11gb|AY340165.1| Acanthophis cf. laevis isolate 1140 NADH dehydrog... 42 1.5
12gb|AY340163.1| Acanthophis antarcticus isolate 1192 NADH dehydro... 42 1.5
13gb|AY340162.1| Acanthophis antarcticus isolate 1137 NADH dehydro... 42 1.5
14gb|AY327612.1| Cryptococcus bacillisporus Crg1 (CRG1) gene, comp... 40 6.1
15gb|AC109458.3| Homo sapiens chromosome 5 clone RP11-257I8, compl... 40 6.1
16gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, compl... 40 6.1 
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                              
Query: 398   tctgaaaaggttactaatctgaaggaattgccagtaaaagttgaggaaa 446
             ||||||||| |||||||||||||||||||||| || || ||| ||||||
Sbjct: 82744 tctgaaaagattactaatctgaaggaattgccggtcaaggttaaggaaa 82696



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 398    tctgaaaaggttactaatctgaagga 423
              ||||||||||||| ||||||||||||
Sbjct: 126214 tctgaaaaggttaataatctgaagga 126189
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>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic
              sequence, complete sequence
          Length = 144544

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 398    tctgaaaaggttactaatctgaaggaattgccagtaaaagttgaggaaa 446
              ||||||||| |||||||||||||||||||||| || || ||| ||||||
Sbjct: 134955 tctgaaaagattactaatctgaaggaattgccggtcaaggttaaggaaa 135003



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 398   tctgaaaaggttactaatctgaagga 423
             ||||||||||||| ||||||||||||
Sbjct: 91493 tctgaaaaggttaataatctgaagga 91518
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 398     tctgaaaaggttactaatctgaaggaattgccagtaaaagttgaggaaa 446
               ||||||||| |||||||||||||||||||||| || || ||| ||||||
Sbjct: 6804107 tctgaaaagattactaatctgaaggaattgccggtcaaggttaaggaaa 6804155



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 398     tctgaaaaggttactaatctgaagga 423
               ||||||||||||| ||||||||||||
Sbjct: 6760645 tctgaaaaggttaataatctgaagga 6760670



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 398     tctgaaaaggttactaatctgaagga 423
               |||||||||||||||||| |||||||
Sbjct: 6556760 tctgaaaaggttactaatttgaagga 6556735
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 398     tctgaaaaggttactaatctgaaggaattgccagtaaaagttgaggaaa 446
               ||||||||| |||||||||||||||||||||| || || ||| ||||||
Sbjct: 6870574 tctgaaaagattactaatctgaaggaattgccggtcaaggttaaggaaa 6870622



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 398     tctgaaaaggttactaatctgaagga 423
               ||||||||||||| ||||||||||||
Sbjct: 6827104 tctgaaaaggttaataatctgaagga 6827129



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 398     tctgaaaaggttactaatctgaagga 423
               |||||||||||||||||| |||||||
Sbjct: 6623227 tctgaaaaggttactaatttgaagga 6623202
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>gb|AF456245.1| Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR5)
           mRNA, complete cds
          Length = 3134

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 398 tctgaaaaggttactaatctgaagga 423
           |||||||||||||||||| |||||||
Sbjct: 247 tctgaaaaggttactaatttgaagga 272
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>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic
             sequence, complete sequence
          Length = 138826

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 398   tctgaaaaggttactaatctgaagga 423
             |||||||||||||||||| |||||||
Sbjct: 15970 tctgaaaaggttactaatttgaagga 15945
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>dbj|AK068380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146P17, full
           insert sequence
          Length = 1150

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 398 tctgaaaaggttactaatctgaagga 423
           ||||||||||||| ||||||||||||
Sbjct: 239 tctgaaaaggttaataatctgaagga 264
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>gb|AY340168.1| Acanthophis pyrrhus isolate 1133 NADH dehydrogenase subunit 4 (ND4)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 648

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  aatcgccgcaatatccatcca 107
           |||||||||||||||||||||
Sbjct: 174 aatcgccgcaatatccatcca 194
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>gb|AY340167.1| Acanthophis cf. laevis isolate 276 NADH dehydrogenase subunit 4
           (ND4) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 648

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  aatcgccgcaatatccatcca 107
           |||||||||||||||||||||
Sbjct: 174 aatcgccgcaatatccatcca 194
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>gb|AY340166.1| Acanthophis cf. laevis isolate 1252 NADH dehydrogenase subunit 4
           (ND4) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 648

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  aatcgccgcaatatccatcca 107
           |||||||||||||||||||||
Sbjct: 174 aatcgccgcaatatccatcca 194
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>gb|AY340165.1| Acanthophis cf. laevis isolate 1140 NADH dehydrogenase subunit 4
           (ND4) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 598

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  aatcgccgcaatatccatcca 107
           |||||||||||||||||||||
Sbjct: 125 aatcgccgcaatatccatcca 145
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>gb|AY340163.1| Acanthophis antarcticus isolate 1192 NADH dehydrogenase subunit 4
           (ND4) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 638

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  aatcgccgcaatatccatcca 107
           |||||||||||||||||||||
Sbjct: 164 aatcgccgcaatatccatcca 184
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>gb|AY340162.1| Acanthophis antarcticus isolate 1137 NADH dehydrogenase subunit 4
           (ND4) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 648

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  aatcgccgcaatatccatcca 107
           |||||||||||||||||||||
Sbjct: 174 aatcgccgcaatatccatcca 194
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>gb|AY327612.1| Cryptococcus bacillisporus Crg1 (CRG1) gene, complete cds
          Length = 6556

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   gtcttctttatcccttcgcc 51
            ||||||||||||||||||||
Sbjct: 3270 gtcttctttatcccttcgcc 3289
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>gb|AC109458.3| Homo sapiens chromosome 5 clone RP11-257I8, complete sequence
          Length = 162191

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    agtaaaagttgaggaaaaaa 449
              ||||||||||||||||||||
Sbjct: 157597 agtaaaagttgaggaaaaaa 157616
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>gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, complete sequence
          Length = 137632

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   agtaaaagttgaggaaaaaa 449
             ||||||||||||||||||||
Sbjct: 93526 agtaaaagttgaggaaaaaa 93507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,421,534
Number of Sequences: 3902068
Number of extensions: 3421534
Number of successful extensions: 54349
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54277
Number of HSP's gapped (non-prelim): 72
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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