ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (... 56 3e-08
2BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 55 8e-08
3BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 53 3e-07
4BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (... 52 5e-07
5BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.... 49 5e-06
6TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH 28 9.9
7SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter ... 28 9.9

>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 731

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 21/36 (58%), Positives = 34/36 (94%)
 Frame = +2

Query: 332 TSAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTPD 439
           ++A+ +V+YDH+A++I+G +R+L+SGSIHYPRSTP+
Sbjct: 20  SAASASVSYDHKAIIINGQKRILISGSIHYPRSTPE 55



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>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 21/35 (60%), Positives = 31/35 (88%)
 Frame = +2

Query: 335 SAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTPD 439
           +   +VTYDH++++I+G RR+L+SGSIHYPRSTP+
Sbjct: 22  AVTASVTYDHKSVIINGQRRILISGSIHYPRSTPE 56



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>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 19/31 (61%), Positives = 30/31 (96%)
 Frame = +2

Query: 347 NVTYDHRALVIDGVRRVLVSGSIHYPRSTPD 439
           +V+YDH+A++++G R++L+SGSIHYPRSTP+
Sbjct: 23  SVSYDHKAIIVNGQRKILISGSIHYPRSTPE 53



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>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 828

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 23/37 (62%), Positives = 31/37 (83%)
 Frame = +2

Query: 329 GTSAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTPD 439
           G++ +T V++D RA+ IDG RR+L+SGSIHYPRST D
Sbjct: 20  GSANSTIVSHDERAITIDGQRRILLSGSIHYPRSTSD 56



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>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)|
           (Lactase) (SR12 protein)
          Length = 731

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 21/31 (67%), Positives = 27/31 (87%)
 Frame = +2

Query: 347 NVTYDHRALVIDGVRRVLVSGSIHYPRSTPD 439
           NV YD+RA+ I+  RR+L+SGSIHYPRSTP+
Sbjct: 30  NVWYDYRAIKINDQRRILLSGSIHYPRSTPE 60



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>TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH|
          Length = 1049

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 254 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 168
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145



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>SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter srpB|
          Length = 1049

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 254 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 168
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,887,208
Number of Sequences: 219361
Number of extensions: 375167
Number of successful extensions: 1125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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