ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53a08 |
|---|---|
| Clone Library Name | barley_pub |
>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 943 Score = 42.0 bits (97), Expect = 8e-04 Identities = 20/26 (76%), Positives = 22/26 (84%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKD 315 DSKYF+TTKKGEI ELK ELNS K+ Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKE 28
>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large Length = 949 Score = 42.0 bits (97), Expect = 8e-04 Identities = 20/26 (76%), Positives = 22/26 (84%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKD 315 DSKYF+TTKKGEI ELK ELNS K+ Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKE 28
>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 949 Score = 42.0 bits (97), Expect = 8e-04 Identities = 20/26 (76%), Positives = 22/26 (84%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKD 315 DSKYF+TTKKGEI ELK ELNS K+ Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKE 28
>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKD 315 DSKYF+T KKGEI ELK ELN++ K+ Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKE 28
>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKD 315 DSKYF+T KKGEI ELK ELN++ K+ Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKE 28
>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKD 315 DSKYF+T KKGEI ELK ELN++ K+ Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKE 28
>RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 301 Score = 32.3 bits (72), Expect = 0.62 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Frame = -2 Query: 194 HRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLD--SARGSQAGVRACESYGDQTDRE 21 H P A GV DG LR GRP + DG +D G G R GD E Sbjct: 157 HLLPDRLASLGVPDGPLRGELAQGRPVVIEDGRTIDPEDVLGPATGGRKLVVIGDTETTE 216 Query: 20 G 18 G Sbjct: 217 G 217
>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)| Length = 504 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 137 ARGGGRPACLRDGMGLDSARGSQAGVRAC 51 ARGG P+ +R G+GL ARGS AC Sbjct: 439 ARGGPGPSPVRSGLGLSRARGSPGPGPAC 467
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -2 Query: 224 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 99 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -2 Query: 224 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 99 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -2 Query: 224 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 99 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>PVG1_SCHPO (Q9UT27) Pyruvyltransferase 1 precursor (EC 2.-.-.-) (Pyruvylated| Gal-beta-1,3-epitope synthesis protein 1) (PvGal synthesis protein 1) Length = 401 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -3 Query: 466 PHSLANQTSSSHCV*FNPAFTEMPRDGSELSAFISLQSN 350 P SL + +SS+ P FT+ PR+ + + I+LQSN Sbjct: 39 PSSLTSPSSSTSVDKKKPLFTKSPRNSASCESTITLQSN 77
>KINH_STRPU (P35978) Kinesin heavy chain| Length = 1031 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = -2 Query: 194 HRSPPPAAEPGVRDGGLRYARGGGRP 117 H P P G+R GG RGGG P Sbjct: 925 HPPPSPGGSTGIRGGGYSGIRGGGSP 950
>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)| Length = 228 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +3 Query: 66 RLAPPRRVQSHPIAQTGRPPATARISEASIANPGLRSRRR 185 R PP V+ HP + RPPA A I+ P R RRR Sbjct: 130 RAVPPVGVRYHPSIEVARPPA------ARISPPRRRRRRR 163
>CCNA2_CHICK (P43449) Cyclin-A2 (Cyclin-A)| Length = 395 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = -2 Query: 206 LPNTHRSPPPAAEPGVRDGGLR--YARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 33 +P ++PPPAA V G LR AR G R+G G +A G Q + Y D+ Sbjct: 11 VPPAAKAPPPAAGTRVALGLLRGGPARPGPAAQAARNGEGRGAAAGQQQ--QPFSVYVDE 68 Query: 32 TDRE 21 D E Sbjct: 69 PDEE 72
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Frame = -2 Query: 206 LPNTHRSPPPAAEPGVRDGGLRYARGGGRP--ACLRDGMGLDSARGSQAGVRACESYGDQ 33 LP PPP P R RGGG P R G A G++A E ++ Sbjct: 284 LPPPPPPPPPPQPPPAGGSARRRRRGGGPPGRGGRRRGGKRRRAEGTEAAAADAE---EE 340 Query: 32 TDREGDDSGD 3 D +GD+ D Sbjct: 341 EDGDGDEDED 350
>U269_DEIRA (Q9RXP1) Protein DR0269| Length = 322 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -2 Query: 164 GVRDGGLRYARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQT---DREGDDSG 6 G R G RGG RP R G G D RG G R E G+++ DR GD G Sbjct: 138 GFRGGDRGGDRGGFRPREDRGGFGGDRDRG---GFRPREDRGERSFGGDRGGDRGG 190
>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) Length = 628 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = -2 Query: 167 PGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 33 PG R L GGGRP G G + G G CE + D+ Sbjct: 58 PGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGGGGGGCEFFFDR 102
>RENBP_PIG (P17560) N-acylglucosamine 2-epimerase (EC 5.1.3.8) (GlcNAc| 2-epimerase) (N-acetyl-D-glucosamine 2-epimerase) (AGE) (Renin-binding protein) (RnBP) Length = 402 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Frame = +3 Query: 60 HTRLAPPRRVQSHPIAQTGRPPATAR-ISEASIANPGLRSRRR*PVCIWQVGSPGRYERA 236 H R+APP + + + + GRP R I + +W+V + RY+ Sbjct: 94 HARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNE-------LWRVTAEARYQSE 146 Query: 237 RLQVL--LHHQKGGDPRAQGGAQLP 305 + ++ + H DP G QLP Sbjct: 147 AVDMMDQIVHWVREDPSGLGRPQLP 171
>COTE1_HUMAN (P81408) COTE1 protein| Length = 669 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +3 Query: 3 ISTVVSLPICLISITLARTHTRLAPPRRVQS--HPIAQTGRPPA 128 I T+ ++ C+ +L HT+LAP R V P+ T PPA Sbjct: 187 ICTLSAIVCCIQIFSLDLVHTQLAPERSVSGPLGPLGCTSPPPA 230
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Frame = -2 Query: 233 PLISPRRAYLPNTHRSP--PPAAEPGVRDGGLRYARGGG 123 P + PR A P R P P A G+R G R+ GG Sbjct: 2449 PPLGPRYAVFPKDQRGPYPPDVASMGMRPHGFRFGFPGG 2487
>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) (snoRNP protein GAR1) Length = 217 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/48 (39%), Positives = 20/48 (41%) Frame = -2 Query: 206 LPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAG 63 LP P P E G GG R RGGGR R G RG + G Sbjct: 152 LPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,348,886 Number of Sequences: 219361 Number of extensions: 1221675 Number of successful extensions: 4225 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4035 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4221 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
