ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53a07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_130133.2| Arabidopsis thaliana unknown protein AT2G45700 mRNA, complete cds Length = 2409 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 179 gacgacgacaacttccagatccctcct 205 ||||||||| ||||||||||||||||| Sbjct: 43 gacgacgacgacttccagatccctcct 69
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 179 gacgacgacaacttccagatccctcct 205 ||||||||| ||||||||||||||||| Sbjct: 96432 gacgacgacgacttccagatccctcct 96458
>gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence Length = 91854 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 179 gacgacgacaacttccagatccctcct 205 ||||||||| ||||||||||||||||| Sbjct: 83828 gacgacgacgacttccagatccctcct 83802
>gb|BT006104.1| Arabidopsis thaliana clone U20112 unknown protein (At2g45700) mRNA, complete cds Length = 2203 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 179 gacgacgacaacttccagatccctcct 205 ||||||||| ||||||||||||||||| Sbjct: 22 gacgacgacgacttccagatccctcct 48
>emb|BX820730.1|CNS0A83B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH63ZH09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2331 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 179 gacgacgacaacttccagatccctcct 205 ||||||||| ||||||||||||||||| Sbjct: 27 gacgacgacgacttccagatccctcct 53
>gb|BT005774.1| Arabidopsis thaliana clone RAFL15-02-L09 (R20112) unknown protein (At2g45700) mRNA, complete cds Length = 2394 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 179 gacgacgacaacttccagatccctcct 205 ||||||||| ||||||||||||||||| Sbjct: 45 gacgacgacgacttccagatccctcct 71
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 304 ggagaaccgccccgttgccagcggca 329 |||||||||||||| ||||||||||| Sbjct: 958261 ggagaaccgccccggtgccagcggca 958236
>emb|CR727457.2|CNS0GO93 Tetraodon nigroviridis full-length cDNA Length = 1231 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 ggagggcaacgaggtgaagggtggag 449 |||||||||||||||||| ||||||| Sbjct: 240 ggagggcaacgaggtgaacggtggag 265
>emb|CR692322.2|CNS0FX5A Tetraodon nigroviridis full-length cDNA Length = 1339 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 ggagggcaacgaggtgaagggtggag 449 |||||||||||||||||| ||||||| Sbjct: 1132 ggagggcaacgaggtgaacggtggag 1157
>emb|CR654764.2|CNS0F46Q Tetraodon nigroviridis full-length cDNA Length = 1303 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 ggagggcaacgaggtgaagggtggag 449 |||||||||||||||||| ||||||| Sbjct: 1098 ggagggcaacgaggtgaacggtggag 1123
>emb|CR648347.2|CNS0EZ8H Tetraodon nigroviridis full-length cDNA Length = 635 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 ggagggcaacgaggtgaagggtggag 449 |||||||||||||||||| ||||||| Sbjct: 521 ggagggcaacgaggtgaacggtggag 546
>emb|CR637347.2|CNS0EQQX Tetraodon nigroviridis full-length cDNA Length = 1298 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 ggagggcaacgaggtgaagggtggag 449 |||||||||||||||||| ||||||| Sbjct: 1091 ggagggcaacgaggtgaacggtggag 1116
>emb|CR635501.2|CNS0EPBN Tetraodon nigroviridis full-length cDNA Length = 1237 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 ggagggcaacgaggtgaagggtggag 449 |||||||||||||||||| ||||||| Sbjct: 1112 ggagggcaacgaggtgaacggtggag 1137
>gb|AC079313.35| Homo sapiens 12q BAC RP11-753H16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160232 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 cctccacctccaccccccatac 129 |||||||||||||||||||||| Sbjct: 61629 cctccacctccaccccccatac 61608
>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198488 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 109 ctccacctccaccccccatacc 130 |||||||||||||||||||||| Sbjct: 111602 ctccacctccaccccccatacc 111623
>ref|XM_506822.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470G10.15 mRNA Length = 1691 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcca 119 ||||||||||||||||||||| Sbjct: 77 cgccggcgacctccacctcca 57
>ref|XM_466189.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1675 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcca 119 ||||||||||||||||||||| Sbjct: 78 cgccggcgacctccacctcca 58
>ref|NM_192814.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1776 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 atggccgccggcgacctccacctcc 118 ||||||||||||||||||| ||||| Sbjct: 1 atggccgccggcgacctcctcctcc 25
>gb|BT018530.1| Zea mays clone EL01N0434A06.d mRNA sequence Length = 1595 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 cggctgccgaaaccctagccg 386 ||||||||||||||||||||| Sbjct: 75 cggctgccgaaaccctagccg 95
>ref|NM_010412.2| Mus musculus histone deacetylase 5 (Hdac5), mRNA Length = 3531 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 240 acctccacctccaccccccat 220
>gb|BC060609.1| Mus musculus histone deacetylase 5, mRNA (cDNA clone MGC:79212 IMAGE:5720438), complete cds Length = 3607 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 318 acctccacctccaccccccat 298
>gb|AC117610.7| Mus musculus chromosome 1, clone RP23-102B12, complete sequence Length = 191587 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 acctccacctccaccccccatacca 131 |||||||||||||||||||| |||| Sbjct: 72551 acctccacctccaccccccacacca 72575
>gb|BC058554.1| Mus musculus histone deacetylase 5, mRNA (cDNA clone IMAGE:5368726), partial cds Length = 4279 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 991 acctccacctccaccccccat 971
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 305 gagaaccgccccgttgccagcggca 329 ||||||||||||| ||||||||||| Sbjct: 483340 gagaaccgccccggtgccagcggca 483316
>emb|AL009177.1|HS365E2 Human DNA sequence from clone RP3-365E2 on chromosome 6p22.3-24.1, complete sequence Length = 137730 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 cccaattcctcaccaaattcc 49 ||||||||||||||||||||| Sbjct: 38691 cccaattcctcaccaaattcc 38671
>dbj|AK139202.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730065K11 product:histone deacetylase 5, full insert sequence Length = 3880 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 605 acctccacctccaccccccat 585
>dbj|AK157159.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830205I23 product:histone deacetylase 5, full insert sequence Length = 5380 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 577 acctccacctccaccccccat 557
>dbj|AK145972.1| Mus musculus 14 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I530019J22 product:histone deacetylase 5, full insert sequence Length = 3763 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 489 acctccacctccaccccccat 469
>dbj|AK156008.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830003O17 product:histone deacetylase 5, full insert sequence Length = 5380 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 577 acctccacctccaccccccat 557
>dbj|AK146483.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920012H24 product:histone deacetylase 5, full insert sequence Length = 3732 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 463 acctccacctccaccccccat 443
>dbj|AK155335.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630221B19 product:histone deacetylase 5, full insert sequence Length = 3767 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 498 acctccacctccaccccccat 478
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcca 119 ||||||||||||||||||||| Sbjct: 20933346 cgccggcgacctccacctcca 20933326
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 atggccgccggcgacctccacctcc 118 ||||||||||||||||||| ||||| Sbjct: 24594358 atggccgccggcgacctcctcctcc 24594382
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 atggccgccggcgacctccacctcc 118 ||||||||||||||||||| ||||| Sbjct: 20321 atggccgccggcgacctcctcctcc 20345
>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470G10 Length = 145419 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcca 119 ||||||||||||||||||||| Sbjct: 56818 cgccggcgacctccacctcca 56798
>gb|AF006602.2|AF006602 Mus musculus histone deacetylase mHDA1 mRNA, complete cds Length = 3531 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 240 acctccacctccaccccccat 220
>gb|AF207748.1|AF207748 Mus musculus histone deacetylase 5 (HDAC5) mRNA, complete cds Length = 3450 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 159 acctccacctccaccccccat 139
>dbj|AK069920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G23, full insert sequence Length = 1675 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcca 119 ||||||||||||||||||||| Sbjct: 78 cgccggcgacctccacctcca 58
>dbj|AK067570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110L15, full insert sequence Length = 2325 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 atggccgccggcgacctccacctcc 118 ||||||||||||||||||| ||||| Sbjct: 68 atggccgccggcgacctcctcctcc 92
>dbj|AK060250.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-B02, full insert sequence Length = 1691 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcca 119 ||||||||||||||||||||| Sbjct: 77 cgccggcgacctccacctcca 57
>gb|AY105474.1| Zea mays PCO117051 mRNA sequence Length = 1555 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 cggctgccgaaaccctagccg 386 ||||||||||||||||||||| Sbjct: 55 cggctgccgaaaccctagccg 75
>gb|AY145846.1| Cricetulus griseus histone deacetylase 5 (HDAC5) mRNA, complete cds Length = 3336 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 156 acctccacctccaccccccat 136
>emb|AL954730.15| Mouse DNA sequence from clone RP23-461C4 on chromosome 11, complete sequence Length = 193721 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 40671 acctccacctccaccccccat 40691
>gb|BC049926.1| Mus musculus cDNA clone IMAGE:5354621, containing frame-shift errors Length = 3743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acctccacctccaccccccat 127 ||||||||||||||||||||| Sbjct: 460 acctccacctccaccccccat 440
>emb|AJ639925.1| Fugu rubripes PTHrPB gene for parathyroid hormone related protein, exons 1-2 Length = 4000 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 ccgcccccgccccctgaagccctcc 238 ||||||||||||||| ||||||||| Sbjct: 108 ccgcccccgcccccttaagccctcc 132
>gb|AC137516.3| Mus musculus BAC clone RP23-259P18 from 1, complete sequence Length = 162037 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 tccacctccaccccccatacc 130 ||||||||||||||||||||| Sbjct: 59425 tccacctccaccccccatacc 59445
>gb|AC121136.11| Mus musculus chromosome 8, clone RP23-339I14, complete sequence Length = 202411 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 acctccacctccacccccca 126 |||||||||||||||||||| Sbjct: 121903 acctccacctccacccccca 121922
>ref|XM_463159.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1329 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ccgaaaccctagccggccgt 391 |||||||||||||||||||| Sbjct: 409 ccgaaaccctagccggccgt 390
>ref|XM_478935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2262 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcc 118 |||||||||||||||||||| Sbjct: 88 cgccggcgacctccacctcc 69
>gb|AF069489.1|HSPDE4A3 Homo sapiens cAMP specific phosphodiesterase 4A variant pde46 (PDE4A) gene, exons 2 through 13 and alternative splice exons 3a, 6a, 6b, and 9a Length = 16440 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 12096 ccagccgcccccgccccctg 12115
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 aagctgcgaagccgacgacgacga 186 ||||||||||| |||||||||||| Sbjct: 13829 aagctgcgaagacgacgacgacga 13806
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 aagctgcgaagccgacgacgacga 186 ||||||||||| |||||||||||| Sbjct: 63744 aagctgcgaagacgacgacgacga 63721
>gb|BC019864.1| Homo sapiens phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila), mRNA (cDNA clone MGC:30168 IMAGE:4942336), complete cds Length = 2429 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 424 ccagccgcccccgccccctg 443
>gb|AC134610.5| Mus musculus BAC clone RP23-79B24 from chromosome 13, complete sequence Length = 235557 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ccataccaacaccacagcta 143 |||||||||||||||||||| Sbjct: 232190 ccataccaacaccacagcta 232171
>gb|AC146418.3| Pan troglodytes BAC clone RP43-30C17 from 7, complete sequence Length = 173505 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 acctccacctccacccccca 126 |||||||||||||||||||| Sbjct: 126015 acctccacctccacccccca 125996
>gb|AY593872.1| Homo sapiens cAMP-specific phosphodiesterase (PDE4A) mRNA, complete cds Length = 2707 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 975 ccagccgcccccgccccctg 994
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ccgaaaccctagccggccgt 391 |||||||||||||||||||| Sbjct: 22870189 ccgaaaccctagccggccgt 22870170 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cggcgacctccacctccacc 121 |||||||||||||||||||| Sbjct: 3022426 cggcgacctccacctccacc 3022407
>gb|AC004159.1| Homo sapiens PAC clone RP5-1057M1 from 7, complete sequence Length = 106039 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 acctccacctccacccccca 126 |||||||||||||||||||| Sbjct: 71482 acctccacctccacccccca 71463
>gb|AC129601.4| Mus musculus BAC clone RP23-444N1 from chromosome 16, complete sequence Length = 173054 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 acctccacctccacccccca 126 |||||||||||||||||||| Sbjct: 75691 acctccacctccacccccca 75710
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ccgaaaccctagccggccgt 391 |||||||||||||||||||| Sbjct: 72719 ccgaaaccctagccggccgt 72700
>gb|AC107750.9| Mus musculus chromosome 13, clone RP23-249C3, complete sequence Length = 220740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ccataccaacaccacagcta 143 |||||||||||||||||||| Sbjct: 74906 ccataccaacaccacagcta 74925
>gb|AC109213.6| Mus musculus chromosome 16, clone RP23-345L20, complete sequence Length = 244558 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctccacctccaccccccat 127 |||||||||||||||||||| Sbjct: 54600 cctccacctccaccccccat 54581
>gb|AF533892.1| Mus musculus p63 (Trp63) gene, alternatively spliced, complete cds Length = 208158 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctccacctccaccccccat 127 |||||||||||||||||||| Sbjct: 182051 cctccacctccaccccccat 182032
>emb|AJ309022.1|GFL309022 Grapevine fleck virus complete genome, isolate MT48, genomic RNA Length = 7564 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ccgccggcgacctccacctc 117 |||||||||||||||||||| Sbjct: 1331 ccgccggcgacctccacctc 1350
>gb|AC011461.5| Homo sapiens chromosome 19 clone CTC-429L19, complete sequence Length = 100680 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 1869 ccagccgcccccgccccctg 1888
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cggcgacctccacctccacc 121 |||||||||||||||||||| Sbjct: 73835 cggcgacctccacctccacc 73854
>ref|NM_006202.1| Homo sapiens phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) (PDE4A), mRNA Length = 4255 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 543 ccagccgcccccgccccctg 562
>gb|AC093283.3| Homo sapiens chromosome 5 clone RP11-428C6, complete sequence Length = 206254 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctccacctccaccccccat 127 |||||||||||||||||||| Sbjct: 37130 cctccacctccaccccccat 37111
>gb|AF073745.2|AF073745 Homo sapiens cyclic AMP-specific phosphodiesterase HSPDE4A10 (PDE4A) mRNA, complete cds Length = 2478 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 774 ccagccgcccccgccccctg 793
>gb|S75213.1| type-IVA cyclic AMP specific phosphodiesterase HPDE4A [human, T-cells, mRNA Partial, 2319 nt] Length = 2319 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 301 ccagccgcccccgccccctg 320
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cggcgacctccacctccacc 121 |||||||||||||||||||| Sbjct: 159917 cggcgacctccacctccacc 159898
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 aagctgcgaagccgacgacgacga 186 ||||||||||| |||||||||||| Sbjct: 19658249 aagctgcgaagacgacgacgacga 19658226
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcc 118 |||||||||||||||||||| Sbjct: 23891219 cgccggcgacctccacctcc 23891200
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ccgaaaccctagccggccgt 391 |||||||||||||||||||| Sbjct: 22863217 ccgaaaccctagccggccgt 22863198 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cggcgacctccacctccacc 121 |||||||||||||||||||| Sbjct: 3022541 cggcgacctccacctccacc 3022522
>gb|AY618547.1| Homo sapiens cyclic AMP phosphodiesterase PDE4A11 (PDE4A) mRNA, partial cds, alternatively spliced Length = 2583 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 879 ccagccgcccccgccccctg 898
>gb|AC008195.6|AC008195 Drosophila melanogaster, chromosome 3R, region 93F-93F, BAC clone BACR42I20, complete sequence Length = 164944 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 gcgaagccgacgacgacgacaact 191 |||||||||||||||||| ||||| Sbjct: 63240 gcgaagccgacgacgacgccaact 63263
>gb|L20967.1|HUMPDEC Homo sapiens phosphodiesterase gene, partial cds Length = 3131 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 958 ccagccgcccccgccccctg 977
>gb|AC147291.3| Pan troglodytes BAC clone RP43-74J18 from chromosome 7, complete sequence Length = 219031 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 acctccacctccacccccca 126 |||||||||||||||||||| Sbjct: 218269 acctccacctccacccccca 218250
>ref|XM_226428.3| PREDICTED: Rattus norvegicus similar to expressed sequence AW413431 (LOC307816), mRNA Length = 2886 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ctcccaccagccgcccccgc 223 |||||||||||||||||||| Sbjct: 1022 ctcccaccagccgcccccgc 1003
>gb|AC011529.4| Homo sapiens chromosome 19 clone LLNLR-227F11, complete sequence Length = 37522 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 29538 ccagccgcccccgccccctg 29557
>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07 Length = 142850 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcc 118 |||||||||||||||||||| Sbjct: 46146 cgccggcgacctccacctcc 46127
>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_C01 Length = 97427 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcc 118 |||||||||||||||||||| Sbjct: 79719 cgccggcgacctccacctcc 79700
>emb|AJ249364.1|GFL249364 Grapevine fleck virus partial mRNA for methyltransferase domain Length = 575 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ccgccggcgacctccacctc 117 |||||||||||||||||||| Sbjct: 257 ccgccggcgacctccacctc 276
>dbj|AK120511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123L23, full insert sequence Length = 2785 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccggcgacctccacctcc 118 |||||||||||||||||||| Sbjct: 262 cgccggcgacctccacctcc 243
>dbj|AK103466.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129N23, full insert sequence Length = 2175 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cggcgacctccacctccacc 121 |||||||||||||||||||| Sbjct: 892 cggcgacctccacctccacc 873
>gb|AE003736.3| Drosophila melanogaster chromosome 3R, section 74 of 118 of the complete sequence Length = 235928 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 gcgaagccgacgacgacgacaact 191 |||||||||||||||||| ||||| Sbjct: 89248 gcgaagccgacgacgacgccaact 89271
>gb|AC110170.6| Mus musculus chromosome 12, clone RP23-301G24, complete sequence Length = 173081 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 ttcccctcctcaccaaatgc 65 |||||||||||||||||||| Sbjct: 163218 ttcccctcctcaccaaatgc 163237
>gb|U68532.1|HSU68532 Homo sapiens cyclic AMP specific phosphodiesterase RD1 (PDE4a) mRNA, complete cds Length = 1963 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 248 ccagccgcccccgccccctg 267
>emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on chromosome 2, complete sequence Length = 163351 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gaggtgaagggtggagcaaa 453 |||||||||||||||||||| Sbjct: 82356 gaggtgaagggtggagcaaa 82337
>gb|U18087.1|HSU18087 Human 3',5'-cyclic AMP phosphodiesterase HPDE4A6 mRNA, complete cds Length = 2091 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 366 ccagccgcccccgccccctg 385
>emb|CT010476.10| Mouse DNA sequence from clone RP23-339L19 on chromosome 12, complete sequence Length = 235489 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 ttcccctcctcaccaaatgc 65 |||||||||||||||||||| Sbjct: 57057 ttcccctcctcaccaaatgc 57076
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 aagctgcgaagccgacgacgacga 186 ||||||||||| |||||||||||| Sbjct: 19944107 aagctgcgaagacgacgacgacga 19944084
>gb|U97584.1|HSU97584 Homo sapiens cyclic AMP-specific phosphodiesterase HSPDE4A1A (PDE4A) mRNA, complete cds Length = 1965 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 261 ccagccgcccccgccccctg 280
>gb|BC038234.1| Homo sapiens phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila), mRNA (cDNA clone MGC:46146 IMAGE:5732341), complete cds Length = 2635 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 565 ccagccgcccccgccccctg 584
>gb|M37744.1|HUMPDEAA Human cyclic AMP (cAMP)-specific phosphodiesterase mRNA, complete cds Length = 2619 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 625 ccagccgcccccgccccctg 644
>gb|L20965.1|HUMPDEA Human phosphodiesterase mRNA, complete cds Length = 3705 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccagccgcccccgccccctg 229 |||||||||||||||||||| Sbjct: 1072 ccagccgcccccgccccctg 1091 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,678,219 Number of Sequences: 3902068 Number of extensions: 3678219 Number of successful extensions: 102559 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101664 Number of HSP's gapped (non-prelim): 895 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
