ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
4gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosom... 42 1.6
5gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, comple... 42 1.6
6gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, co... 42 1.6
7emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.6
8gb|AY105442.1| Zea mays PCO070685 mRNA sequence 42 1.6
9gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, com... 42 1.6
10gb|AC129554.13| Mus musculus chromosome 17, clone RP24-358N7, co... 40 6.2
11gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.2
12gb|AC148078.2| Mus musculus BAC clone RP24-186K12 from chromosom... 40 6.2
13gb|AC126799.3| Mus musculus BAC clone RP24-388B22 from chromosom... 40 6.2
14ref|XR_004497.1| PREDICTED: Mus musculus RIKEN cDNA A030006P16 g... 40 6.2
15ref|XR_002308.1| PREDICTED: Mus musculus RIKEN cDNA A030006P16 g... 40 6.2
16gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, com... 40 6.2
17emb|AL596247.22| Human DNA sequence from clone RP11-417O11 on ch... 40 6.2
18gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.2
19emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.2
20emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
21gb|AY834753.1| Cystobacter fuscus cystothiazole A gene cluster, ... 40 6.2
22gb|AC025483.7| Homo sapiens chromosome 15, clone RP11-398I10, co... 40 6.2
23gb|AY842032.1| Echinostelium arboreum elongation factor 1F-alpha... 40 6.2
24gb|DQ450376.1| Uncultured bacterium clone X37 16S ribosomal RNA ... 40 6.2
25gb|DQ381153.1| Bos taurus BTA01 scaffold135_21121 genomic sequen... 40 6.2
26ref|XM_943483.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.2
27ref|XM_930972.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.2
28gb|AC022436.6| Homo sapiens chromosome 19 clone LLNLR-303H1, com... 40 6.2
29dbj|AK020698.1| Mus musculus 6 days neonate skin cDNA, RIKEN ful... 40 6.2
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
31gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 f... 40 6.2
32ref|XM_223945.3| PREDICTED: Rattus norvegicus sterile alpha moti... 40 6.2
33dbj|BS000131.1| Pan troglodytes chromosome 22 clone:PTB-315N10, ... 40 6.2
34emb|AL133523.5|CNS01DVB Human chromosome 14 DNA sequence BAC R-7... 40 6.2
35dbj|AP001745.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.2
36emb|CT030728.6| Mouse DNA sequence from clone RP23-108F2 on chro... 40 6.2
37emb|AL844893.9| Mouse DNA sequence from clone RP23-355H24 on chr... 40 6.2
38dbj|AP001619.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 6.2
39emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on ch... 40 6.2 
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0032K12, complete sequence
          Length = 166936

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 128   gggcacggccgccgccggcgca 149
             ||||||||||||||||||||||
Sbjct: 14021 gggcacggccgccgccggcgca 14042
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 128     gggcacggccgccgccggcgca 149
               ||||||||||||||||||||||
Sbjct: 6888763 gggcacggccgccgccggcgca 6888784
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 128     gggcacggccgccgccggcgca 149
               ||||||||||||||||||||||
Sbjct: 6955230 gggcacggccgccgccggcgca 6955251
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>gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosome 14, complete sequence
          Length = 143851

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 430    gcaggccagcctggtcttgaa 450
              |||||||||||||||||||||
Sbjct: 105023 gcaggccagcctggtcttgaa 105043
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>gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, complete sequence
          Length = 214229

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 432    aggccagcctggtcttgaagg 452
              |||||||||||||||||||||
Sbjct: 189420 aggccagcctggtcttgaagg 189400
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>gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, complete sequence
          Length = 227950

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    ctgccccctcgtggcggcgag 118
             |||||||||||||||||||||
Sbjct: 18683 ctgccccctcgtggcggcgag 18703
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 379    tgctgctgcggatggcctgccggtg 403
              |||||| ||||||||||||||||||
Sbjct: 710241 tgctgcggcggatggcctgccggtg 710265
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>gb|AY105442.1| Zea mays PCO070685 mRNA sequence
          Length = 1591

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 124 gacggggcacggccgccgccg 144
           |||||||||||||||||||||
Sbjct: 202 gacggggcacggccgccgccg 182
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>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence
          Length = 237824

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 98     ctgccccctcgtggcggcgag 118
              |||||||||||||||||||||
Sbjct: 101585 ctgccccctcgtggcggcgag 101605
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>gb|AC129554.13| Mus musculus chromosome 17, clone RP24-358N7, complete sequence
          Length = 182184

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   aggccagcctggtcttgaag 451
             ||||||||||||||||||||
Sbjct: 87656 aggccagcctggtcttgaag 87675
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     ggcacggccgccgccggcgc 148
               ||||||||||||||||||||
Sbjct: 1067886 ggcacggccgccgccggcgc 1067867
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>gb|AC148078.2| Mus musculus BAC clone RP24-186K12 from chromosome 13, complete
             sequence
          Length = 149455

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   ccccctccaggtcccctggg 265
             ||||||||||||||||||||
Sbjct: 77715 ccccctccaggtcccctggg 77734
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>gb|AC126799.3| Mus musculus BAC clone RP24-388B22 from chromosome 13, complete sequence
          Length = 168873

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    ccccctccaggtcccctggg 265
              ||||||||||||||||||||
Sbjct: 158923 ccccctccaggtcccctggg 158942
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>ref|XR_004497.1| PREDICTED: Mus musculus RIKEN cDNA A030006P16 gene (A030006P16Rik),
           misc RNA
          Length = 766

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 ccgcagcctccgcatccccc 250
           ||||||||||||||||||||
Sbjct: 240 ccgcagcctccgcatccccc 221
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>ref|XR_002308.1| PREDICTED: Mus musculus RIKEN cDNA A030006P16 gene (A030006P16Rik),
           misc RNA
          Length = 438

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 ccgcagcctccgcatccccc 250
           ||||||||||||||||||||
Sbjct: 271 ccgcagcctccgcatccccc 252
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>gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, complete sequence
          Length = 253013

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   caggccagcctggtcttgaa 450
             ||||||||||||||||||||
Sbjct: 41150 caggccagcctggtcttgaa 41131
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>emb|AL596247.22| Human DNA sequence from clone RP11-417O11 on chromosome 10 Contains the
             5' end of the CAMK2G gene for calcium/calmodulin-dependent
             protein kinase (CaM kinase) II gamma, the PLAU gene for
             plasminogen activator urokinase, three novel genes
             (FLJ35198), the 5' end of the VCL gene for vinculin and
             three CpG islands, complete sequence
          Length = 228098

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   gccgcagcctccgcatccccctcc 253
             ||||||||||| ||||||||||||
Sbjct: 22746 gccgcagcctcagcatccccctcc 22723
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     ggcacggccgccgccggcgc 148
               ||||||||||||||||||||
Sbjct: 1272250 ggcacggccgccgccggcgc 1272231
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    ggcacggccgccgccggcgc 148
              ||||||||||||||||||||
Sbjct: 948881 ggcacggccgccgccggcgc 948862
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>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
              complete sequence
          Length = 127419

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    caaggagctgatggagcaga 314
              ||||||||||||||||||||
Sbjct: 113772 caaggagctgatggagcaga 113791
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>gb|AY834753.1| Cystobacter fuscus cystothiazole A gene cluster, complete sequence
          Length = 63876

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 183   gcgccttcacctctgcggcgtccc 206
             ||||||||||||| ||||||||||
Sbjct: 20348 gcgccttcacctcggcggcgtccc 20325
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>gb|AC025483.7| Homo sapiens chromosome 15, clone RP11-398I10, complete sequence
          Length = 180096

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   gccgcagcctccgcatccccctcc 253
             |||||||||||||| |||||||||
Sbjct: 84117 gccgcagcctccgcgtccccctcc 84094
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>gb|AY842032.1| Echinostelium arboreum elongation factor 1F-alpha (EF1A) gene,
           partial cds
          Length = 1550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 cctccgcatccccctccagg 256
           ||||||||||||||||||||
Sbjct: 831 cctccgcatccccctccagg 850
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>gb|DQ450376.1| Uncultured bacterium clone X37 16S ribosomal RNA gene, partial
           sequence
          Length = 262

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 cagaagctctatcaggagga 366
           ||||||||||||||||||||
Sbjct: 169 cagaagctctatcaggagga 188
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>gb|DQ381153.1| Bos taurus BTA01 scaffold135_21121 genomic sequence contig containing
            highly polymorphic single nucleotide sites
          Length = 3453

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  tccctccttttccgcaccct 222
            ||||||||||||||||||||
Sbjct: 1809 tccctccttttccgcaccct 1828
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>ref|XM_943483.1| PREDICTED: Homo sapiens hypothetical protein LOC648836 (LOC648836),
           mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 230 gccgcagcctccgcatccccctcc 253
           |||||||||||||| |||||||||
Sbjct: 345 gccgcagcctccgcgtccccctcc 368
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>ref|XM_930972.1| PREDICTED: Homo sapiens hypothetical protein LOC642644 (LOC642644),
           mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 230 gccgcagcctccgcatccccctcc 253
           |||||||||||||| |||||||||
Sbjct: 345 gccgcagcctccgcgtccccctcc 368
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>gb|AC022436.6| Homo sapiens chromosome 19 clone LLNLR-303H1, complete sequence
          Length = 43280

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ttttgaactcccggtctcaa 59
             ||||||||||||||||||||
Sbjct: 20887 ttttgaactcccggtctcaa 20906
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>dbj|AK020698.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:A030006P16 product:unclassifiable, full
           insert sequence
          Length = 763

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 ccgcagcctccgcatccccc 250
           ||||||||||||||||||||
Sbjct: 241 ccgcagcctccgcatccccc 222
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     caaggagctgatggagcaga 314
               ||||||||||||||||||||
Sbjct: 3524477 caaggagctgatggagcaga 3524496
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>gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 from the MHC region,
              complete sequence
          Length = 192871

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    aggccagcctggtcttgaag 451
              ||||||||||||||||||||
Sbjct: 132112 aggccagcctggtcttgaag 132131
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>ref|XM_223945.3| PREDICTED: Rattus norvegicus sterile alpha motif domain containing 4
            (predicted) (Samd4_predicted), mRNA
          Length = 2317

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 233  gcagcctccgcatccccctccagg 256
            ||||||| ||||||||||||||||
Sbjct: 1193 gcagcctgcgcatccccctccagg 1216
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>dbj|BS000131.1| Pan troglodytes chromosome 22 clone:PTB-315N10, map 22, complete
             sequences
          Length = 138403

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tcctgccgcagcctccgcat 245
             ||||||||||||||||||||
Sbjct: 30257 tcctgccgcagcctccgcat 30276
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>emb|AL133523.5|CNS01DVB Human chromosome 14 DNA sequence BAC R-775G15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173039

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 426   tggagcaggccagcctggtcttga 449
             |||||||||||||||||| |||||
Sbjct: 56476 tggagcaggccagcctggacttga 56499
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>dbj|AP001745.1| Homo sapiens genomic DNA, chromosome 21q, section 89/105
          Length = 336578

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tcctgccgcagcctccgcat 245
             ||||||||||||||||||||
Sbjct: 36987 tcctgccgcagcctccgcat 37006
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>emb|CT030728.6| Mouse DNA sequence from clone RP23-108F2 on chromosome 17, complete
             sequence
          Length = 219013

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   aggccagcctggtcttgaag 451
             ||||||||||||||||||||
Sbjct: 12922 aggccagcctggtcttgaag 12903
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>emb|AL844893.9| Mouse DNA sequence from clone RP23-355H24 on chromosome 2, complete
              sequence
          Length = 175570

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    cagacccgtttggtcttgaa 330
              ||||||||||||||||||||
Sbjct: 153506 cagacccgtttggtcttgaa 153487
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>dbj|AP001619.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1016E7, MX1-D21S171
             region, complete sequence
          Length = 161226

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tcctgccgcagcctccgcat 245
             ||||||||||||||||||||
Sbjct: 12060 tcctgccgcagcctccgcat 12079
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>emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on chromosome 11, complete
             sequence
          Length = 142565

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ccgcagcctccgcatccccc 250
             ||||||||||||||||||||
Sbjct: 67218 ccgcagcctccgcatccccc 67237


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,654,484
Number of Sequences: 3902068
Number of extensions: 4654484
Number of successful extensions: 371478
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 370676
Number of HSP's gapped (non-prelim): 802
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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