>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 269 EAPPRPRGTRASPNPGPGATQGSP 198
           E PPRPR    +P PGPG+  G+P
Sbjct: 71  EEPPRPRAPPGAPGPGPGS--GAP 92

>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 269 EAPPRPRGTRASPNPGPGATQGSP 198
           E PPRPR    +P PGPG+  G+P
Sbjct: 71  EEPPRPRAPPGAPGPGPGS--GAP 92

>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 269 EAPPRPRGTRASPNPGPGATQGSP 198
           E PPRPR    +P PGPG+  G+P
Sbjct: 67  EEPPRPRAPPGAPGPGPGS--GAP 88

>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 281 GAC*EAPPRPRGTRA-SPNPGPGATQGSP 198
           GA    PPRP+  R  +P PGPG   G P
Sbjct: 203 GASAGGPPRPQAPRPQAPRPGPGTAGGRP 231

>WHRN_RAT (Q810W9) Whirlin (CASK-interacting protein CIP98)|
          Length = 920

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 266 APPRPRGTRASPNPGPGATQGSP 198
           +PP P G   +P PGP + + SP
Sbjct: 637 SPPPPPGIAPTPTPGPSSARDSP 659

>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)|
          Length = 646

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
 Frame = +1

Query: 208 WVAP--GPGFGDA-----RVPRGRGGASQQAPP 285
           WV P  GPG G A     R  RGRGG S   PP
Sbjct: 585 WVLPCNGPGGGRAGREEGRSTRGRGGESPPRPP 617

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 293 SL*GGAC*EAPPRPRGTRASPNPGPGATQGSP 198
           SL GGA  + P  P G    P PGPG   G P
Sbjct: 5   SLEGGAG-DGPLPPGGAGPGPGPGPGPGAGKP 35

>P049_PSEAE (Q9I783) Protein PA0049 precursor|
          Length = 553

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 205 PWVAPGPGFGDARVPRGRGGASQ 273
           PW  PGP   DA +   +GGA+Q
Sbjct: 281 PWFRPGPRRVDASITISQGGANQ 303

>HXD11_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5)|
          Length = 323

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -2

Query: 266 APPRPRGT--RASPNPGPGATQGSP 198
           APP+P G   +  P PG G   GSP
Sbjct: 185 APPQPEGAADKGDPKPGAGGGGGSP 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,176,036
Number of Sequences: 219361
Number of extensions: 367502
Number of successful extensions: 2318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2304
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)