>gb|AC069419.20| Homo sapiens 3 BAC RP11-11D18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 61415

 Score = 42.1 bits (21), Expect = 0.072
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tgtcagggacactctgctctc 38
             |||||||||||||||||||||
Sbjct: 55239 tgtcagggacactctgctctc 55219

>gb|AF380344.1|AF380343S2 Homo sapiens pontin 52 (RUVBL1) gene, exons 2 through 11, and complete
             cds
          Length = 40881

 Score = 42.1 bits (21), Expect = 0.072
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tgtcagggacactctgctctc 38
             |||||||||||||||||||||
Sbjct: 36705 tgtcagggacactctgctctc 36685

>emb|BX647488.1|HSM807634 Homo sapiens mRNA; cDNA DKFZp686C14128 (from clone DKFZp686C14128)
          Length = 4094

 Score = 42.1 bits (21), Expect = 0.072
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 18  tgtcagggacactctgctctc 38
           |||||||||||||||||||||
Sbjct: 446 tgtcagggacactctgctctc 426

>gb|BC058111.1| Mus musculus zinc fingers and homeoboxes 3, mRNA (cDNA clone
           MGC:67301 IMAGE:6836697), complete cds
          Length = 4499

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 929 ctgtcagggacactctgctc 910

>ref|NM_177263.3| Mus musculus zinc fingers and homeoboxes 3 (Zhx3), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 929 ctgtcagggacactctgctc 910

>dbj|AK143296.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230037F05
           product:zinc fingers and homeoboxes 3, full insert
           sequence
          Length = 4462

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 910 ctgtcagggacactctgctc 891

>dbj|AK147259.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1003G16 product:zinc fingers and homeoboxes 3,
           full insert sequence
          Length = 9067

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 751 ctgtcagggacactctgctc 732

>dbj|AK029603.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930412E20 product:DJ511B24.3 (KIAA0395
           (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens],
           full insert sequence
          Length = 3352

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 801 ctgtcagggacactctgctc 782

>dbj|AK030057.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932418O04 product:DJ511B24.3 (KIAA0395
           (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens],
           full insert sequence
          Length = 3611

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 894 ctgtcagggacactctgctc 875

>dbj|AB099703.2| Mus musculus ZHX3 gene for transcription factor ZHX3, complete cds
          Length = 13008

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   ctgtcagggacactctgctc 36
            ||||||||||||||||||||
Sbjct: 1998 ctgtcagggacactctgctc 1979

>dbj|AB099527.2| Mus musculus mRNA for transcription factor ZHX3, complete cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 473 ctgtcagggacactctgctc 454

>gb|DQ317973.1| Mus musculus zinc fingers and homeoboxes 3 (Zhx3) mRNA, complete
           cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ctgtcagggacactctgctc 36
           ||||||||||||||||||||
Sbjct: 473 ctgtcagggacactctgctc 454

>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete
             sequence
          Length = 207901

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ctgtcagggacactctgctc 36
             ||||||||||||||||||||
Sbjct: 51687 ctgtcagggacactctgctc 51706

>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence
          Length = 191823

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 21   cagggacactctgctctc 38
            ||||||||||||||||||
Sbjct: 6758 cagggacactctgctctc 6741

>gb|AC106830.11| Mus musculus chromosome 15, clone RP24-402C20, complete sequence
          Length = 171577

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 11  cctaacctgtcagggaca 28
           ||||||||||||||||||
Sbjct: 497 cctaacctgtcagggaca 514

>gb|AC127312.4| Mus musculus BAC clone RP23-306F21 from 15, complete sequence
          Length = 194254

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 11   cctaacctgtcagggaca 28
            ||||||||||||||||||
Sbjct: 7184 cctaacctgtcagggaca 7167

>gb|AC159977.4| Mus musculus chromosome 5, clone RP24-121I11, complete sequence
          Length = 156847

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    cagggacactctgctctc 38
             ||||||||||||||||||
Sbjct: 11407 cagggacactctgctctc 11424

>gb|BC044561.1| Danio rerio soluble liver antigen/liver pancreas antigen (Homo
           sapiens), like, mRNA (cDNA clone MGC:55980
           IMAGE:3819614), complete cds
          Length = 1780

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 12  ctaacctgtcagggacac 29
           ||||||||||||||||||
Sbjct: 846 ctaacctgtcagggacac 829

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 3       cgcaaaaccctaacctgtcagg 24
               ||||||||| ||||||||||||
Sbjct: 4532427 cgcaaaaccttaacctgtcagg 4532448

>ref|NM_200154.1| Danio rerio soluble liver antigen/liver pancreas antigen (Homo
           sapiens), like (sla/lpl), mRNA
          Length = 1780

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 12  ctaacctgtcagggacac 29
           ||||||||||||||||||
Sbjct: 846 ctaacctgtcagggacac 829

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 20       tcagggacactctgctct 37
                ||||||||||||||||||
Sbjct: 13071494 tcagggacactctgctct 13071511



 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 20      tcagggacactctgctct 37
               ||||||||||||||||||
Sbjct: 4827942 tcagggacactctgctct 4827925



 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 20      tcagggacactctgctct 37
               ||||||||||||||||||
Sbjct: 1173019 tcagggacactctgctct 1173002

>gb|AC019153.13| Mus musculus chromosome 2 clone RP23-286D16, complete sequence
          Length = 195068

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    aacctgtcagggacactc 31
             ||||||||||||||||||
Sbjct: 62699 aacctgtcagggacactc 62716

>gb|AC159110.2| Pan troglodytes BAC clone CH251-533A11 from chromosome y, complete
              sequence
          Length = 174450

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 20     tcagggacactctgctct 37
              ||||||||||||||||||
Sbjct: 138317 tcagggacactctgctct 138334

>gb|AC148874.4| Pan troglodytes BAC clone CH251-429C12 from chromosome y, complete
              sequence
          Length = 168193

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     tcagggacactctgctct 37
              ||||||||||||||||||
Sbjct: 101756 tcagggacactctgctct 101739

>gb|AC159109.2| Pan troglodytes BAC clone CH251-514F15 from chromosome y, complete
             sequence
          Length = 180838

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 20    tcagggacactctgctct 37
             ||||||||||||||||||
Sbjct: 12171 tcagggacactctgctct 12154

>gb|AC161385.5| Pan troglodytes BAC clone CH251-708E9 from chromosome y, complete
            sequence
          Length = 200030

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   tcagggacactctgctct 37
            ||||||||||||||||||
Sbjct: 3180 tcagggacactctgctct 3163

>gb|AC159650.5| Pan troglodytes BAC clone CH251-379D1 from chromosome y, complete
             sequence
          Length = 214370

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 20    tcagggacactctgctct 37
             ||||||||||||||||||
Sbjct: 66472 tcagggacactctgctct 66489

>emb|BX004793.12| Mouse DNA sequence from clone RP23-188D9 on chromosome 2, complete
              sequence
          Length = 161514

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     aacctgtcagggacactc 31
              ||||||||||||||||||
Sbjct: 134369 aacctgtcagggacactc 134352


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 222,406
Number of Sequences: 3902068
Number of extensions: 222406
Number of successful extensions: 50628
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50535
Number of HSP's gapped (non-prelim): 93
length of query: 40
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 20
effective length of database: 17,155,003,908
effective search space: 343100078160
effective search space used: 343100078160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)