ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BLAC_BACSU (P39824) Beta-lactamase precursor (EC 3.5.2.6) (Penic... 30 2.1
2BLAC_YEREN (Q01166) Beta-lactamase precursor (EC 3.5.2.6) (Penic... 30 3.6
3BLAC_BACAM (Q44674) Beta-lactamase precursor (EC 3.5.2.6) (Penic... 29 4.7
4TRBI_AGRTU (P54917) Conjugal transfer protein trbI 29 4.7
5Y1714_ARATH (Q8LE98) Hypothetical protein At1g17140 29 6.2
6FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400 29 6.2
7BLAC_BACTU (Q45726) Beta-lactamase type I precursor (EC 3.5.2.6)... 28 8.1
8BLAC_BACCE (P00809) Beta-lactamase, type I precursor (EC 3.5.2.6... 28 8.1
9BLA1_BACMY (P28018) Beta-lactamase type I precursor (EC 3.5.2.6)... 28 8.1
10MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-rela... 28 8.1
11MASY_GOSHI (P17432) Malate synthase, glyoxysomal (EC 2.3.3.9) 28 8.1

>BLAC_BACSU (P39824) Beta-lactamase precursor (EC 3.5.2.6) (Penicillinase)|
          Length = 306

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -2

Query: 191 RGSSTGRSPLAASDPLDRDMGGRRGDKAWGSKGDLTRLW 75
           RG++TG   + A  P+  ++G + G  ++G++ D+  +W
Sbjct: 229 RGNATGDELIRAGAPIGWEVGDKSGAGSYGTRNDIAIVW 267



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>BLAC_YEREN (Q01166) Beta-lactamase precursor (EC 3.5.2.6) (Penicillinase)|
          Length = 294

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 191 RGSSTGRSPLAASDPLDRDMGGRRGDKAWGSKGDLTRLW 75
           +G++TG + + A  P D  +G + G   +G+  D+  LW
Sbjct: 217 KGNTTGDATIRAGAPTDWIVGDKTGSGDYGTTNDIAVLW 255



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>BLAC_BACAM (Q44674) Beta-lactamase precursor (EC 3.5.2.6) (Penicillinase)|
          Length = 306

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 191 RGSSTGRSPLAASDPLDRDMGGRRGDKAWGSKGDLTRLW 75
           RG++TG   + A  P   ++G + G  ++G++ D+  +W
Sbjct: 229 RGNATGDELIRAGAPAGWEVGDKSGAGSYGTRNDIAIVW 267



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>TRBI_AGRTU (P54917) Conjugal transfer protein trbI|
          Length = 433

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 47  AQTSTRIRLTTAASDLPSIPKPCPRAGL--PCLDPEGQKQQEGIF 175
           A TST I  T  ASDL +      RAGL    +DP GQK +E  F
Sbjct: 181 ANTSTAISPTAGASDLYAAAL---RAGLGGQNIDPNGQKSKEDFF 222



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>Y1714_ARATH (Q8LE98) Hypothetical protein At1g17140|
          Length = 344

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 71  LTTAASDLPSIPKPCPRAGLPCLDPEGQKQQEG 169
           +TT  S  P + +  PR+G P  DP GQK+  G
Sbjct: 33  ITTDQSFKPGVDRKSPRSGGPNSDPLGQKKLGG 65



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>FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400|
          Length = 980

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 36  AATLPKL---PRASG*PQPRQISLRSPSLVPAPASHVSI 143
           AA++P++   PRA+  P PR +S   PS VP   +  S+
Sbjct: 432 AASVPQMVPTPRAAARPTPRPVSSPGPSPVPVSPASASV 470



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>BLAC_BACTU (Q45726) Beta-lactamase type I precursor (EC 3.5.2.6)|
           (Penicillinase)
          Length = 309

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 191 RGSSTGRSPLAASDPLDRDMGGRRGDKAWGSKGDLTRLW 75
           +G++TG   + A  P D  +G + G  ++G++ D+  +W
Sbjct: 232 KGNATGDKLIRAGVPTDWVVGDKSGAGSYGTRNDIAIVW 270



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>BLAC_BACCE (P00809) Beta-lactamase, type I precursor (EC 3.5.2.6)|
           (Penicillinase)
          Length = 306

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 191 RGSSTGRSPLAASDPLDRDMGGRRGDKAWGSKGDLTRLW 75
           +G++TG   + A  P D  +G + G  ++G++ D+  +W
Sbjct: 231 KGNATGDKLIRAGIPTDWVVGDKSGAGSYGTRNDIAVVW 269



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>BLA1_BACMY (P28018) Beta-lactamase type I precursor (EC 3.5.2.6)|
           (Penicillinase)
          Length = 306

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 191 RGSSTGRSPLAASDPLDRDMGGRRGDKAWGSKGDLTRLW 75
           +G++TG   + A  P D  +G + G  ++G++ D+  +W
Sbjct: 229 KGNATGDKLIRAGVPTDWIVGDKSGAGSYGTRNDIAIVW 267



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>MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-related|
           transcription factor A) (MRTF-A) (Megakaryoblastic
           leukemia 1 protein) (Megacaryocytic acute leukemia
           protein)
          Length = 931

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 53  TSTRIRLTTAASDLPSIPKP-CPRAGLPCLDPEGQKQQEG 169
           TS   +LT  AS L  + K   PRAG  CL P G+ + EG
Sbjct: 481 TSPLTQLTLQASPLQILVKEEGPRAGSCCLSPGGRAELEG 520



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>MASY_GOSHI (P17432) Malate synthase, glyoxysomal (EC 2.3.3.9)|
          Length = 567

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 87  DAAVVSLMRVEVWAGWRRGTETEGGSLG 4
           DAA   + RV++W   + G E +G  LG
Sbjct: 468 DAATAEISRVQIWQWLKYGVELDGDGLG 495


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,019,094
Number of Sequences: 219361
Number of extensions: 907322
Number of successful extensions: 3328
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3326
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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