ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50h03 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.7 bits (195), Expect = 3e-15 Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 1/92 (1%) Frame = +1 Query: 154 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 330 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 331 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRV 426 +R+VLP +DHTI+KLLL++ EI+ K GR+ Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRL 94
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.7 bits (195), Expect = 3e-15 Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 1/92 (1%) Frame = +1 Query: 154 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 330 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 331 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRV 426 +R+VLP +DHTI+KLLL++ EI+ K GR+ Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRL 94
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.7 bits (195), Expect = 3e-15 Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 1/92 (1%) Frame = +1 Query: 154 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 330 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 331 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRV 426 +R+VLP +DHTI+KLLL++ EI+ K GR+ Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRL 94
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 79.3 bits (194), Expect = 3e-15 Identities = 36/87 (41%), Positives = 56/87 (64%) Frame = +1 Query: 166 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 345 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 346 PSEDHTIQKLLLLYLEIIDKRDAAGRV 426 P ++HTI+KLLL++ EI+ K A G++ Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKL 92
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 57.8 bits (138), Expect = 1e-08 Identities = 28/84 (33%), Positives = 49/84 (58%) Frame = +1 Query: 169 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 348 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 349 SEDHTIQKLLLLYLEIIDKRDAAG 420 S + ++KLL Y E+ K + G Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDG 86
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 48.9 bits (115), Expect = 5e-06 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = +1 Query: 223 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 402 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 403 KRDAAGRV 426 K G++ Sbjct: 89 KLAEDGKL 96
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +1 Query: 127 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 306 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 307 LPTLFITVVRYVLPSED 357 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +2 Query: 35 PVNHSPPLPAPRSRSTS------AADPTTD 106 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +2 Query: 35 PVNHSPPLPAPRSRSTS------AADPTTD 106 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 17 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 148 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 17 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 148 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>THIC_RHILO (Q98AZ3) Thiamine biosynthesis protein thiC| Length = 619 Score = 30.0 bits (66), Expect = 2.4 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 11/87 (12%) Frame = +1 Query: 19 ISPLRSCQPLPPS-----SG---SQISIHLRRRSNHRYPTRRRPPARVHGRSGAMDKPCT 174 ++P S PLP S SG QI + +R S H PT PP V+ SG P T Sbjct: 12 LTPAVSTGPLPASRKIHKSGVLHPQIRVPMREISVH--PTAGEPPVIVYDPSGPYTDP-T 68 Query: 175 LLVHFDKGSAAMANE---IKADLEGSD 246 + +KG A + +E + D+E D Sbjct: 69 VETSIEKGLARLRHEWITARGDVEAYD 95
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 17 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 148 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B)| (XIRS-L') Length = 1088 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 17 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 148 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 358 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 401
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 17 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 148 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 155 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 198
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -3 Query: 222 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 49 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 3.2 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +1 Query: 190 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 360 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 361 TIQKLLL--LYLEIIDKRDAAGR 423 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 17 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 148 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +1 Query: 157 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 327 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 328 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 420 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 114 CGVSVVGSAAEVDRDLGAGRGGEWL 40 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +1 Query: 229 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 360 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +1 Query: 229 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 360 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 43 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 138 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 9.2 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 332 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 168 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 167 GLSMAPDLP 141 GL PD P Sbjct: 314 GLHSNPDSP 322
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 9.2 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 332 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 168 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 167 GLSMAPDLP 141 GL PD P Sbjct: 314 GLHSNPDSP 322
>SOCS1_MOUSE (O35716) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) Length = 212 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +2 Query: 14 LASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 157 +A A N P PR RS ++ ++ +P A R C A PAP Sbjct: 2 VARNQVAADNAISPAAEPRRRSEPSSSSSSSSPAAPVRPRPCPAVPAP 49
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +2 Query: 44 HSPPLPAPRSRSTSAADPTTDTPHAVALR 130 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 257 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 120 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -3 Query: 156 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 49 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,132,416 Number of Sequences: 219361 Number of extensions: 769833 Number of successful extensions: 3836 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3819 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
