ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl50g10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 120 bits (302), Expect = 7e-28 Identities = 56/79 (70%), Positives = 66/79 (83%) Frame = +2 Query: 44 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 223 +GG++ LTG + A LKG+VVLMRKN LD NDFGAT++DG+ E LG+GVTCQLISST V Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV 62 Query: 224 DHNNGGRGKVGAEANLEQW 280 D +NGGRGKVGAEA LEQW Sbjct: 63 DQDNGGRGKVGAEAELEQW 81
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 118 bits (295), Expect = 4e-27 Identities = 56/79 (70%), Positives = 66/79 (83%) Frame = +2 Query: 44 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 223 +GGI+ +TG + + LKG+VVLMRKN LD NDFGATV+DG+ E LG+GVTCQLISST V Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTAV 61 Query: 224 DHNNGGRGKVGAEANLEQW 280 D NNG RGKVGAEA+LEQW Sbjct: 62 DPNNGNRGKVGAEASLEQW 80
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 116 bits (291), Expect = 1e-26 Identities = 56/79 (70%), Positives = 67/79 (84%) Frame = +2 Query: 44 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 223 +GGI+ LTG + A LKGS+VLMRKNALD NDFGATV+DG++E LGRGVTCQL+SS+ V Sbjct: 2 LGGIIGGLTGN-KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSLV 60 Query: 224 DHNNGGRGKVGAEANLEQW 280 D NNG RG+VG EA+LEQW Sbjct: 61 DPNNGNRGRVGTEASLEQW 79
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 77.8 bits (190), Expect = 7e-15 Identities = 40/78 (51%), Positives = 52/78 (66%) Frame = +2 Query: 44 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 223 +GG+ LTG G +KG VLM + LD DF A+++D V E+ G +TCQL+S+T Sbjct: 2 LGGLKDKLTGK-NGNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATVA 60 Query: 224 DHNNGGRGKVGAEANLEQ 277 D NN GRG VG+EANLEQ Sbjct: 61 DQNNEGRGIVGSEANLEQ 78
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 73.6 bits (179), Expect = 1e-13 Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Frame = +2 Query: 65 LTGG---LRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNN 235 LTGG +KG+VVLM+KN LDFNDF A+ +D + E LG +T +L+SS D N Sbjct: 9 LTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSEN 68 Query: 236 GGRGKVGAEANLEQW 280 G +GK+G A+LE W Sbjct: 69 GSKGKLGKAAHLEDW 83
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 65.5 bits (158), Expect = 3e-11 Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Frame = +2 Query: 44 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLIS-STN 220 +GGIV + G +KG V+LM+KN LDF + GA+V+DG+++LLG+ V+ QLIS S N Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGSVN 62 Query: 221 VDHNNGGRGKVGAEANLEQW 280 D G GK+ A LE W Sbjct: 63 YD---GLEGKLSNPAYLESW 79
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 63.5 bits (153), Expect = 1e-10 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 5/81 (6%) Frame = +2 Query: 53 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 217 ++ L GGL G H +KG+VV+M+KNALDF D ++ D + E LG+ V+ QLISS Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60 Query: 218 NVDHNNGGRGKVGAEANLEQW 280 D NG +GK A LE + Sbjct: 61 QSDPANGLQGKHSNPAYLENF 81
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 61.2 bits (147), Expect = 6e-10 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 6/84 (7%) Frame = +2 Query: 44 VGGIVSDLTGGLRGA----HLKGSVVLMRKNALDFNDFGATVMDGVTELLGR--GVTCQL 205 V G LTG + A ++G+ VL++K+ L DF A+++DGV +LG GV +L Sbjct: 3 VQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAFRL 62 Query: 206 ISSTNVDHNNGGRGKVGAEANLEQ 277 +S+T D +NGGRGK+G A+LE+ Sbjct: 63 VSATARDPSNGGRGKLGKPAHLEE 86
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 57.8 bits (138), Expect = 7e-09 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 5/79 (6%) Frame = +2 Query: 53 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 217 ++ +T GL G H +KG+VV+M KN LDF D ++ + ++LG+ V+ QLISS Sbjct: 1 MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSV 60 Query: 218 NVDHNNGGRGKVGAEANLE 274 D NG +GK A LE Sbjct: 61 QGDPTNGLQGKHSNPAYLE 79
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 57.4 bits (137), Expect = 9e-09 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 19/90 (21%) Frame = +2 Query: 62 DLTGGLRGAH-LKGSVVLMRKNALDFN--------------DFGATV----MDGVTELLG 184 ++TG L H ++G+VVLMRKN LDFN D G + +DG+T LG Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLG 63 Query: 185 RGVTCQLISSTNVDHNNGGRGKVGAEANLE 274 R V+ QLIS+T D N G+GKVG + LE Sbjct: 64 RSVSLQLISATKSDAN--GKGKVGKDTFLE 91
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 54.3 bits (129), Expect = 8e-08 Identities = 40/99 (40%), Positives = 49/99 (49%), Gaps = 19/99 (19%) Frame = +2 Query: 35 MFGVGGIVSDLTGGLRGAH-LKGSVVLMRKNALDFNDFG------------------ATV 157 MF V G+ L G G H +KG+VVLMRKN LDFN + Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGST 58 Query: 158 MDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLE 274 +D +T LGR V QLIS+T N G+GKVG + LE Sbjct: 59 LDNLTAFLGRSVALQLISATKPLAN--GKGKVGKDTFLE 95
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 53.1 bits (126), Expect = 2e-07 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 14/86 (16%) Frame = +2 Query: 59 SDLTGGL-RGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELLGRGVT 196 S +TG L RG +KG+VVLMRKN LD N D + +D +T LGR V+ Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVS 62 Query: 197 CQLISSTNVDHNNGGRGKVGAEANLE 274 QLIS+T D G+GK+G LE Sbjct: 63 LQLISATKPDAT--GKGKLGKATFLE 86
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 52.8 bits (125), Expect = 2e-07 Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 15/85 (17%) Frame = +2 Query: 65 LTGGL--RGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELLGRGVTC 199 + GGL RG +KG+VVLMRKN L N D + +D +T LGR V+ Sbjct: 1 MLGGLLHRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRPVSL 60 Query: 200 QLISSTNVDHNNGGRGKVGAEANLE 274 QLIS+T D N G+GK+G LE Sbjct: 61 QLISATKADAN--GKGKLGKATFLE 83
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 52.4 bits (124), Expect = 3e-07 Identities = 31/64 (48%), Positives = 41/64 (64%) Frame = +2 Query: 83 GAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAE 262 G +KG+VVLM KN L+ N G+ V D + LGR V+ QLIS+T D + G+GKVG + Sbjct: 5 GHKIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKD 61 Query: 263 ANLE 274 LE Sbjct: 62 TFLE 65
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 51.2 bits (121), Expect = 7e-07 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 22/88 (25%) Frame = +2 Query: 80 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 193 RG +KG+VVLM KN DFN+F +T ++DG T + R + Sbjct: 7 RGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNI 66 Query: 194 TCQLISSTNVDHNNGGRGKVGAEANLEQ 277 QLIS+T D G GKVG + LE+ Sbjct: 67 AIQLISATKTD--GLGNGKVGKQTFLEK 92
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 50.1 bits (118), Expect = 1e-06 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 22/88 (25%) Frame = +2 Query: 80 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 193 +G +KG+VVLM KN LDFN + V+D T LGR + Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66 Query: 194 TCQLISSTNVDHNNGGRGKVGAEANLEQ 277 + QLIS+T D G GKVG E LE+ Sbjct: 67 SMQLISATQTD--GSGNGKVGKEVYLEK 92
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 48.1 bits (113), Expect = 6e-06 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 20/85 (23%) Frame = +2 Query: 80 RGAHLKGSVVLMRKNALDFN--------------------DFGATVMDGVTELLGRGVTC 199 RG LKG+V+LM+KN LD N +++D T LGR V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 200 QLISSTNVDHNNGGRGKVGAEANLE 274 +LIS+T D + G+GKV EA LE Sbjct: 68 RLISATVADAS--GKGKVSKEAFLE 90
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 43.1 bits (100), Expect = 2e-04 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 13/79 (16%) Frame = +2 Query: 74 GLRGAHLKGSVVLMRKNALDFND-------------FGATVMDGVTELLGRGVTCQLISS 214 G +G +KG++V+M+KN LD N F + +D +T ++ QLIS+ Sbjct: 5 GQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALT-FAATKISIQLISA 63 Query: 215 TNVDHNNGGRGKVGAEANL 271 T D GG+GK+G NL Sbjct: 64 TKAD---GGKGKIGKSTNL 79
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 35.4 bits (80), Expect = 0.038 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = -3 Query: 243 RPPLLWSTLVELMSWQVTPRPRSSVT-----PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 79 R P L++ L S PRPRS+ PS AP + + R+ PL W P+ Sbjct: 228 RSPDLFTPLSRPPSPLSLPRPRSAPARRPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQ 287 Query: 78 RPPVRSLTMPPTP 40 R ++L+ PPTP Sbjct: 288 R---QTLSRPPTP 297
>YAI7_SCHPO (Q09894) Hypothetical protein C24B11.07c in chromosome I| Length = 561 Score = 32.0 bits (71), Expect = 0.42 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = -3 Query: 270 RFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLR 91 R SAP+ + + + ++++S RS +PS+ +SLKS RT +P R Sbjct: 380 RIPSAPSLSKGRAMTADNMDMLSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGRTFDP-R 438 Query: 90 WAPR-RPPVR 64 +APR PPVR Sbjct: 439 FAPRGSPPVR 448
>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 31.2 bits (69), Expect = 0.71 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = -3 Query: 279 HCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTE 100 H S P+ P P L ST+ + + V ++S TP A +SS + T Sbjct: 128 HTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNSSGVPPTA 187 Query: 99 PLRWAPRRPP 70 P+ AP PP Sbjct: 188 PVTEAPTSPP 197
>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ| domain-containing protein) Length = 910 Score = 30.8 bits (68), Expect = 0.93 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -3 Query: 195 VTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNIFARSL 19 V P P S +PS AP L SS + ++ W R PP + +PP P+I + L Sbjct: 563 VMPHPPSVNSPSKVPAPPVLPSSGHVSSSSSP---WVQRTPP--PIPIPPPPSIPTQDL 616
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = -3 Query: 255 PTFPRP-PLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPR 79 P P+P P ++ + S P P++S P+ T +PK T+P + Sbjct: 84 PATPKPTPPTYTPSPKPKSPVYPPPPKASTPPTYTPSPKP---------PATKPPTYPTP 134 Query: 78 RPPVRSLTMPPTPNIFARS 22 +PP T PPTP ++ S Sbjct: 135 KPPA---TKPPTPPVYTPS 150
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -3 Query: 252 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 79 T P PP M+ +TP P S+ T P+ T +P + ++ T P P Sbjct: 1498 TTPSPP---------MTTPITP-PASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPI 1547 Query: 78 RPPVRSLTMPPT 43 PP + T+PPT Sbjct: 1548 TPPTSTTTLPPT 1559 Score = 29.6 bits (65), Expect = 2.1 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = -3 Query: 252 TFPRPPLLWSTLVELMSWQVTPRPRSSVT----PSMTVAPKSLKSSAFLRMRTTEPLRWA 85 T P PP + +T + TP P ++ T P+ T +P + TT P Sbjct: 1584 TTPSPPTITTTTPPPTT---TPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTT 1640 Query: 84 PRRPPVRSLTMPPT 43 P PP + T PPT Sbjct: 1641 PSPPPTTTTTPPPT 1654 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -3 Query: 252 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 79 T P PP+ +T + TP P ++ P+ T +P + ++ T P P Sbjct: 1452 TTPSPPISTTTTPPPTT---TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPI 1508 Query: 78 RPPVRSLTMPPT 43 PP + T+PPT Sbjct: 1509 TPPASTTTLPPT 1520
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 110 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 217 LM+K AL F+DF + G L G+TC+LI +T Sbjct: 856 LMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPAT 891
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -3 Query: 192 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 103 TP P S +PS+ +L+ S F+RM++T Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKST 270
>IWS1_XENTR (Q505H7) IWS1-like protein| Length = 909 Score = 29.6 bits (65), Expect = 2.1 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = -2 Query: 157 DGGAEVVEVERVLAHEDDG-----ALEVGAPEAPRQVAH-DAADAKHLRSISG 17 DGGA V+ ER A +D+G E G+PE + H D D KH RS SG Sbjct: 15 DGGATPVQDERDSASDDEGNEREQRSEPGSPERQSEDEHSDIEDNKH-RSDSG 66
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = -3 Query: 258 APTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPR 79 AP PP + + V M V +P SSV P+ T +L S P AP+ Sbjct: 1480 APVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPA-TAPSSTLPPSQSSFAHVPSPAPPAPQ 1538 Query: 78 RPPVRSLTMPPTPN 37 P +L+ P N Sbjct: 1539 HPSAAALSSAPADN 1552
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 29.3 bits (64), Expect = 2.7 Identities = 26/78 (33%), Positives = 32/78 (41%) Frame = -3 Query: 255 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRR 76 PT P L ST VTP+P S T S T S+ +T P+ AP Sbjct: 1409 PTAPELQLSTST-----DQAVTPKPTSRTTRSRT------NMSSVKNPESTVPI--APEL 1455 Query: 75 PPVRSLTMPPTPNIFARS 22 PP S P TP +R+ Sbjct: 1456 PPSTSTEQPVTPEPTSRA 1473 Score = 28.1 bits (61), Expect = 6.0 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = -3 Query: 195 VTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNIFARS 22 VTP+P S T S T S+ +T P+ AP PP S P TP +R+ Sbjct: 1301 VTPKPTSRTTRSRT------NMSSVKNPESTVPI--APELPPSTSTEQPVTPEPTSRA 1350
>Y1216_PYRHO (O58967) Hypothetical ABC transporter permease protein PH1216| Length = 275 Score = 28.9 bits (63), Expect = 3.5 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = -3 Query: 234 LLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSA-FLRMRTTEPLRWAPR---RPPV 67 LL+ L+ L +W + P + T + T +L + F+ T +P R A R RP + Sbjct: 10 LLYIVLIFLAAWYLLPIWSAITTSTKTGEQVALTTPVQFVFPPTFDPYREAFRELKRPIL 69 Query: 66 RSLTMPPTPNIFARSLGSVA 7 SL IF+ LGS+A Sbjct: 70 NSLIFTTFATIFSTILGSIA 89
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Frame = -2 Query: 157 DGGAEVVEVERVLAHEDDG---ALEVGAPEAPRQVAH-DAADAKH 35 DGGA V+ ER A +D+G E G+PE + H D D KH Sbjct: 13 DGGATPVQDERDSASDDEGNEQRSEPGSPEHQSEDEHSDVEDHKH 57
>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)| Length = 279 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/51 (37%), Positives = 20/51 (39%) Frame = -3 Query: 192 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTP 40 TP P S TPS T P S T P P P S T PP+P Sbjct: 136 TPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSP---TPTPSPTPSPTPPPSP 183 Score = 28.1 bits (61), Expect = 6.0 Identities = 24/73 (32%), Positives = 25/73 (34%) Frame = -3 Query: 255 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRR 76 P P TL S TP P S TPS T P S T P P Sbjct: 75 PALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTP-TPSP 133 Query: 75 PPVRSLTMPPTPN 37 P S T PTP+ Sbjct: 134 TPTPSPTPSPTPS 146
>PYRH_DEIRA (Q9RU81) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 245 Score = 28.9 bits (63), Expect = 3.5 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +2 Query: 14 LPRDRAKMFGVGG----IVSDLTGGLRGAHLKGSVVLMRKNALD 133 L + R +FG G +D T LR + VVLM KNA+D Sbjct: 127 LEKGRVVIFGGGNGAPFFTTDTTSTLRALEIGADVVLMAKNAVD 170
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 28.9 bits (63), Expect = 3.5 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -3 Query: 255 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPL-RWAPR 79 PT + PL E+ TP P S P APK +K+ A L + P +P Sbjct: 1245 PTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPA 1304 Query: 78 RPPVRSLTMPP 46 R P +L PP Sbjct: 1305 RQPPAALAKPP 1315
>HUNB_DROIK (O46242) Protein hunchback (Fragments)| Length = 193 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/68 (25%), Positives = 34/68 (50%) Frame = -3 Query: 243 RPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVR 64 RPP L + + +M + P P ++ T + T A S ++A + +++ + L+ P Sbjct: 101 RPPGLPNPMQTIMPANMRPSPTATTTATTTAAAASTTTAATVALQSNDKLQ---ALTPPM 157 Query: 63 SLTMPPTP 40 +T P +P Sbjct: 158 DVTPPKSP 165
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 28.5 bits (62), Expect = 4.6 Identities = 25/78 (32%), Positives = 32/78 (41%) Frame = -3 Query: 255 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRR 76 PT P + ST VTP+P S T S T S+ +T P+ AP Sbjct: 1327 PTAPELQISTST-----DQPVTPKPTSRTTRSRT------NMSSVKNPESTVPI--APEL 1373 Query: 75 PPVRSLTMPPTPNIFARS 22 PP S P TP +R+ Sbjct: 1374 PPSTSTEQPVTPEPTSRA 1391
>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 925 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 192 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 103 TP P + +PS+ +L+ S F+RM++T Sbjct: 246 TPEPVETTSPSLLTTDNTLERSFFIRMKST 275
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 85 APEAPRQVAHDAADAKHLRSISGECG 8 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 189 PRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRS 61 P P SS TP++ V P + ++ L +T+P P+ PV S Sbjct: 1026 PPPASSATPALHVQPLAPAAAPSLLQASTQPEVLLPKPAPVYS 1068
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = -3 Query: 255 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRR 76 P PRPP+ ++T +S P P VT S+ P S ++ L + L PR Sbjct: 1754 PPLPRPPIAFTTFPLPLS-PPNPPPPQLVTFSL---PISTPPTSSLPLPPPLSLPPPPRP 1809 Query: 75 PPVRSLTMPPTPNI 34 P R PP+ +I Sbjct: 1810 PAPRLFPQPPSTSI 1823
>CI079_HUMAN (Q6ZUB1) Protein C9orf79| Length = 1445 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = -3 Query: 213 ELMSWQVTPRPR-SSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRS--LTMPPT 43 E + W + RP+ V PS+ +++ S + P W+P+ P+ +T P Sbjct: 565 EYLEWPLKKRPKWKRVLPSLLKKSQAVLSQPTAHLPQERPASWSPKSAPILPGVVTSPEL 624 Query: 42 P 40 P Sbjct: 625 P 625
>PE55_LUCCU (Q95UE8) Peritrophin-55 precursor| Length = 220 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Frame = -3 Query: 276 CSRFASAPTFPR---------PPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSA 124 C F APT PL+ T + + TP S TP +T AP S + Sbjct: 84 CDNFIPAPTCEYLKQTTDVECVPLVKPTTAAPTTLKTTP---SKTTPIVTTAPPSTPVPS 140 Query: 123 FLRMRTTEPLRWAPRRPPVRSLTMPPTP 40 + +P +PP + T+ P+P Sbjct: 141 TIVTNKPDPTTPKTTKPPKVTTTVNPSP 168
>2A5R_MOUSE (Q9Z176) Protein phosphatase 2A, 59 kDa regulatory subunit B| (PP2A PR59) (PP2A B''-PR59) Length = 491 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 84 PRRPPVRSLTMPPTPNIFARSLGSVAR 4 P RPP+R+L P A++L S+AR Sbjct: 2 PERPPIRALRRDPDDPAVAQALASLAR 28
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 27.7 bits (60), Expect = 7.9 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Frame = -3 Query: 261 SAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTV---APKSLKSSAFLRMRTTEPLR 91 SAPT P+ P +T + P P ++ P+ T AP + K A T P + Sbjct: 388 SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPA-----PTTPKK 442 Query: 90 WAPRRPPVRSLTMP--PTP 40 AP P + T P PTP Sbjct: 443 PAPTTPKEPAPTTPKEPTP 461
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 27.7 bits (60), Expect = 7.9 Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Frame = -3 Query: 261 SAPTFPRPPLLWSTLVELMSWQVTPR-PRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWA 85 SA P PLL EL P P S + PKS S P A Sbjct: 647 SAQPTPGEPLLAPPTTELKPESSNPNNPNPSSSAGSNPPPKSSSSD-------NPP---A 696 Query: 84 PRRP-PVRSLTMPPTPNI 34 P +P P S T PP+PN+ Sbjct: 697 PNKPTPTSSSTTPPSPNL 714 Score = 27.7 bits (60), Expect = 7.9 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%) Frame = -3 Query: 261 SAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPS--MTVAPKSLKSSAFLRMRTTEPLRW 88 S+P FP PP L + L T P + TP + P + P Sbjct: 620 SSPLFPPPPPLPPSQPPLSQGPATQAPSAQPTPGEPLLAPPTTELKPESSNPNNPNPSSS 679 Query: 87 APRRPPVRSLTM--PPTPN 37 A PP +S + PP PN Sbjct: 680 AGSNPPPKSSSSDNPPAPN 698
>TBX10_MOUSE (Q810F8) T-box transcription factor TBX10 (T-box protein 10)| Length = 385 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -3 Query: 204 SWQVTPRPRSSV--TPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNI 34 SW VTPRP S+ +++P LK SA T++ + R P + P P++ Sbjct: 257 SWPVTPRPLLSIPARSRSSLSPCLLKGSAEREKDTSKASASSSRTPTQPHNQLLPAPDV 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,797,114 Number of Sequences: 219361 Number of extensions: 481238 Number of successful extensions: 2475 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 2356 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2455 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
