ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50g08 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 47.0 bits (110), Expect = 1e-05 Identities = 19/36 (52%), Positives = 29/36 (80%) Frame = +2 Query: 281 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLTR 388 +EK AVLQEAR+F++ ++ RRC ++TK+LYLL + Sbjct: 22 LEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQ 57
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 47.0 bits (110), Expect = 1e-05 Identities = 19/36 (52%), Positives = 29/36 (80%) Frame = +2 Query: 281 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLTR 388 +EK AVLQEAR+F++ ++ RRC ++TK+LYLL + Sbjct: 22 LEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQ 57
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 45.8 bits (107), Expect = 2e-05 Identities = 18/36 (50%), Positives = 29/36 (80%) Frame = +2 Query: 281 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLTR 388 +EK AVLQEARVF++ ++ R+C ++TK+LYL+ + Sbjct: 22 LEKSAVLQEARVFNETPINPRKCAHILTKILYLINQ 57
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 45.8 bits (107), Expect = 2e-05 Identities = 18/36 (50%), Positives = 29/36 (80%) Frame = +2 Query: 281 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLTR 388 +EK AVLQEARVF++ ++ R+C ++TK+LYL+ + Sbjct: 22 LEKSAVLQEARVFNETPINPRKCAHILTKILYLINQ 57
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 42.7 bits (99), Expect = 2e-04 Identities = 15/34 (44%), Positives = 29/34 (85%) Frame = +2 Query: 281 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLL 382 ++K +VLQEAR F++ ++AR+CC +++KL+Y++ Sbjct: 18 LDKTSVLQEARAFNETPINARKCCFILSKLIYII 51
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 75 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 161 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 75 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 161 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 349 ASPRIKLRVVEDAGLLQDGTLLDAEGRR 266 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 349 ASPRIKLRVVEDAGLLQDGTLLDAEGRR 266 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>ZN335_HUMAN (Q9H4Z2) Zinc finger protein 335| Length = 1342 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 149 PRERRRSGAARELPRVLVSRFCEG 78 PR RRR G R+LPR+ +S +G Sbjct: 345 PRPRRRPGRPRKLPRLEISDLPDG 368
>YIBL_AZOVI (P96194) Putative HTH-type transcriptional regulator in ibpB-leuC| intergenic region Length = 144 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -1 Query: 354 WQHRRASSCGSWKTRASCRTAP 289 W+ ASS W TR SC AP Sbjct: 120 WRWTSASSIRKWPTRRSCTAAP 141
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 129 APPPFSRHSGRPGRTIRARIAPPQ 200 APP F RPG + A +APP+ Sbjct: 882 APPAFPEVRVRPGSALAAAVAPPE 905
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 14/56 (25%) Frame = +3 Query: 66 PVQSSLAKPRDKDSRELSRRPA-------PPPFSRHSGRP-------GRTIRARIA 191 PV+ + P DK + +PA PPP +R +G+P +RAR+A Sbjct: 33 PVEHDRSAPADKPAERTRPKPAPPERPRPPPPRARAAGQPAARSGGSSNRVRARLA 88
>GELS_DROME (Q07171) Gelsolin precursor| Length = 798 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 66 PVQSSLAKPRDKDSRELSRRPAPPPFSRHSGRPGRTI 176 PVQS +P ++S++ +RR P F+ PG I Sbjct: 38 PVQSGEIQPSGQNSKQAARRVMHPSFANAGRTPGLEI 74
>VE4_HPV08 (P06425) Probable protein E4| Length = 229 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +3 Query: 66 PVQSSLAKPRDKDSRELSRRPAPPPFSRHSGRPGRTIRARIAP 194 P+Q+S KP+ KD RPA + G GR +AP Sbjct: 46 PLQNSHNKPKPKDEGTGDGRPAEQDRKKSRGDQGRDTAPGLAP 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,672,433 Number of Sequences: 219361 Number of extensions: 605321 Number of successful extensions: 2251 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2239 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
