ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 44 0.36
2ref|NM_124572.1| Arabidopsis thaliana FAD binding / aldehyde-lya... 42 1.4
3ref|XM_468734.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
4gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
6gb|AC003083.2| Homo sapiens BAC clone CTB-60N22 from 7, complete... 42 1.4
7gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, comp... 42 1.4
8gb|DQ447063.1| Arabidopsis thaliana clone pENTR221-At5g51930 glu... 42 1.4
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
10dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.4
11gb|AC124387.5| Mus musculus BAC clone RP24-426N3 from chromosome... 42 1.4
12gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosom... 42 1.4
13ref|NM_001011547.1| Homo sapiens solute carrier family 5 (sodium... 40 5.6
14gb|BC048332.1| Homo sapiens solute carrier family 5 (sodium/gluc... 40 5.6
15ref|XM_746941.1| Aspergillus fumigatus Af293 pitrilysin family m... 40 5.6
16gb|AC122450.4| Mus musculus BAC clone RP24-249K4 from chromosome... 40 5.6
17emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chro... 40 5.6
18emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on ch... 40 5.6
19emb|AL109659.20|HSJ1024N4 Human DNA sequence from clone RP5-1024... 40 5.6
20emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 5.6
21gb|BC025411.1| Homo sapiens solute carrier family 5 (sodium/gluc... 40 5.6
22emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B... 40 5.6
23gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosom... 40 5.6
24dbj|AK131200.1| Homo sapiens cDNA FLJ16055 fis, clone SMINT20103... 40 5.6
25gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36... 40 5.6
26emb|BX648549.1|HSM808697 Homo sapiens mRNA; cDNA DKFZp779B1826 (... 40 5.6
27gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 5.6
28gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65... 40 5.6
29emb|AL732426.6| Mouse DNA sequence from clone RP23-132J17 on chr... 40 5.6

>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 363    atcaaaatcaaagtttaacagg 384
              ||||||||||||||||||||||
Sbjct: 576123 atcaaaatcaaagtttaacagg 576144



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>ref|NM_124572.1| Arabidopsis thaliana FAD binding / aldehyde-lyase/ oxidoreductase/
           oxidoreductase, acting on CH-OH group of donors
           AT5G51930 mRNA, complete cds
          Length = 1749

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acattggcaccaaagaatgct 134
           |||||||||||||||||||||
Sbjct: 193 acattggcaccaaagaatgct 213



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>ref|XM_468734.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2325

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 261  catcttggaggatacaagaaa 281
            |||||||||||||||||||||
Sbjct: 1922 catcttggaggatacaagaaa 1942



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>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19
              map E30331S, complete sequence
          Length = 164820

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 261    catcttggaggatacaagaaa 281
              |||||||||||||||||||||
Sbjct: 144144 catcttggaggatacaagaaa 144124



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 261      catcttggaggatacaagaaa 281
                |||||||||||||||||||||
Sbjct: 17419599 catcttggaggatacaagaaa 17419619



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>gb|AC003083.2| Homo sapiens BAC clone CTB-60N22 from 7, complete sequence
          Length = 136823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    agggcttgcaactttcagttt 56
             |||||||||||||||||||||
Sbjct: 26338 agggcttgcaactttcagttt 26358



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>gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence
          Length = 155731

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    agggcttgcaactttcagttt 56
             |||||||||||||||||||||
Sbjct: 22270 agggcttgcaactttcagttt 22250



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>gb|DQ447063.1| Arabidopsis thaliana clone pENTR221-At5g51930
           glucose-methanol-choline  oxidoreductase family protein
           (At5g51930) mRNA, complete cds
          Length = 1693

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acattggcaccaaagaatgct 134
           |||||||||||||||||||||
Sbjct: 119 acattggcaccaaagaatgct 139



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 261      catcttggaggatacaagaaa 281
                |||||||||||||||||||||
Sbjct: 17413140 catcttggaggatacaagaaa 17413160



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>dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15
          Length = 81347

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  acattggcaccaaagaatgct 134
            |||||||||||||||||||||
Sbjct: 2803 acattggcaccaaagaatgct 2823



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>gb|AC124387.5| Mus musculus BAC clone RP24-426N3 from chromosome 13, complete sequence
          Length = 159689

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    gaaaggacattggcaccaaag 128
              |||||||||||||||||||||
Sbjct: 157834 gaaaggacattggcaccaaag 157854



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>gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosome 13, complete sequence
          Length = 181988

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    gaaaggacattggcaccaaag 128
              |||||||||||||||||||||
Sbjct: 171169 gaaaggacattggcaccaaag 171149



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>ref|NM_001011547.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter),
            member 9 (SLC5A9), mRNA
          Length = 3227

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tggaggatacaagaaaagga 285
            ||||||||||||||||||||
Sbjct: 2474 tggaggatacaagaaaagga 2493



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>gb|BC048332.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter),
            member 9, mRNA (cDNA clone IMAGE:5189864), with apparent
            retained intron
          Length = 3844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tggaggatacaagaaaagga 285
            ||||||||||||||||||||
Sbjct: 2996 tggaggatacaagaaaagga 3015



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>ref|XM_746941.1| Aspergillus fumigatus Af293 pitrilysin family metalloprotease Cym1
           (Afu4g07910) partial mRNA
          Length = 3198

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 agtagagataattggcatct 265
           ||||||||||||||||||||
Sbjct: 727 agtagagataattggcatct 708



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>gb|AC122450.4| Mus musculus BAC clone RP24-249K4 from chromosome 1, complete sequence
          Length = 154695

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    tagagattcaaaacggaact 172
              ||||||||||||||||||||
Sbjct: 117648 tagagattcaaaacggaact 117667



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>emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 113271

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   gatacaagaaaaggaaatgt 290
             ||||||||||||||||||||
Sbjct: 71782 gatacaagaaaaggaaatgt 71801



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>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
              sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    gaggatacaagaaaaggaaa 287
              ||||||||||||||||||||
Sbjct: 101325 gaggatacaagaaaaggaaa 101306



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>emb|AL109659.20|HSJ1024N4 Human DNA sequence from clone RP5-1024N4 on chromosome 1p32.1-33
             Contains two novel genes, a novel pseudogene, a novel gene
             (LOC200010), a novel gene similar to connexin and one CpG
             island, complete sequence
          Length = 181678

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   tggaggatacaagaaaagga 285
             ||||||||||||||||||||
Sbjct: 35569 tggaggatacaagaaaagga 35550



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>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              7/17
          Length = 348813

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     cctgtatccattcctcaata 31
              ||||||||||||||||||||
Sbjct: 317387 cctgtatccattcctcaata 317406



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>gb|BC025411.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter),
            member 9, mRNA (cDNA clone IMAGE:4827595)
          Length = 2007

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tggaggatacaagaaaagga 285
            ||||||||||||||||||||
Sbjct: 1246 tggaggatacaagaaaagga 1265



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>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 357   aaaatcatcaaaatcaaagtttaa 380
             ||||| ||||||||||||||||||
Sbjct: 76629 aaaattatcaaaatcaaagtttaa 76652



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>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete
             sequence
          Length = 174250

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    gtaccagtgccggaattaaccaag 103
             ||||||||||| ||||||||||||
Sbjct: 22243 gtaccagtgccagaattaaccaag 22220



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>dbj|AK131200.1| Homo sapiens cDNA FLJ16055 fis, clone SMINT2010324, moderately
            similar to SODIUM/GLUCOSE COTRANSPORTER 1
          Length = 3148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tggaggatacaagaaaagga 285
            ||||||||||||||||||||
Sbjct: 2399 tggaggatacaagaaaagga 2418



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>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
              BACR06C11, complete sequence
          Length = 174500

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ggaaaggacattggcaccaa 126
              ||||||||||||||||||||
Sbjct: 165900 ggaaaggacattggcaccaa 165881



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>emb|BX648549.1|HSM808697 Homo sapiens mRNA; cDNA DKFZp779B1826 (from clone DKFZp779B1826)
          Length = 3248

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tggaggatacaagaaaagga 285
            ||||||||||||||||||||
Sbjct: 2475 tggaggatacaagaaaagga 2494



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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
             BACR01G10 and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ggaaaggacattggcaccaa 126
             ||||||||||||||||||||
Sbjct: 33885 ggaaaggacattggcaccaa 33866



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>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete
              sequence
          Length = 251192

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ggaaaggacattggcaccaa 126
              ||||||||||||||||||||
Sbjct: 196397 ggaaaggacattggcaccaa 196378



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>emb|AL732426.6| Mouse DNA sequence from clone RP23-132J17 on chromosome X, complete
             sequence
          Length = 140199

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    aattaaccaaggaaggaaag 112
             ||||||||||||||||||||
Sbjct: 25948 aattaaccaaggaaggaaag 25967


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,713,635
Number of Sequences: 3902068
Number of extensions: 3713635
Number of successful extensions: 144217
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144114
Number of HSP's gapped (non-prelim): 103
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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