Clone Name | bastl50g06 |
---|---|
Clone Library Name | barley_pub |
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 363 atcaaaatcaaagtttaacagg 384 |||||||||||||||||||||| Sbjct: 576123 atcaaaatcaaagtttaacagg 576144
>ref|NM_124572.1| Arabidopsis thaliana FAD binding / aldehyde-lyase/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors AT5G51930 mRNA, complete cds Length = 1749 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 acattggcaccaaagaatgct 134 ||||||||||||||||||||| Sbjct: 193 acattggcaccaaagaatgct 213
>ref|XM_468734.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2325 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 catcttggaggatacaagaaa 281 ||||||||||||||||||||| Sbjct: 1922 catcttggaggatacaagaaa 1942
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 catcttggaggatacaagaaa 281 ||||||||||||||||||||| Sbjct: 144144 catcttggaggatacaagaaa 144124
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 catcttggaggatacaagaaa 281 ||||||||||||||||||||| Sbjct: 17419599 catcttggaggatacaagaaa 17419619
>gb|AC003083.2| Homo sapiens BAC clone CTB-60N22 from 7, complete sequence Length = 136823 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 agggcttgcaactttcagttt 56 ||||||||||||||||||||| Sbjct: 26338 agggcttgcaactttcagttt 26358
>gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence Length = 155731 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 agggcttgcaactttcagttt 56 ||||||||||||||||||||| Sbjct: 22270 agggcttgcaactttcagttt 22250
>gb|DQ447063.1| Arabidopsis thaliana clone pENTR221-At5g51930 glucose-methanol-choline oxidoreductase family protein (At5g51930) mRNA, complete cds Length = 1693 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 acattggcaccaaagaatgct 134 ||||||||||||||||||||| Sbjct: 119 acattggcaccaaagaatgct 139
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 catcttggaggatacaagaaa 281 ||||||||||||||||||||| Sbjct: 17413140 catcttggaggatacaagaaa 17413160
>dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15 Length = 81347 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 acattggcaccaaagaatgct 134 ||||||||||||||||||||| Sbjct: 2803 acattggcaccaaagaatgct 2823
>gb|AC124387.5| Mus musculus BAC clone RP24-426N3 from chromosome 13, complete sequence Length = 159689 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 gaaaggacattggcaccaaag 128 ||||||||||||||||||||| Sbjct: 157834 gaaaggacattggcaccaaag 157854
>gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosome 13, complete sequence Length = 181988 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 gaaaggacattggcaccaaag 128 ||||||||||||||||||||| Sbjct: 171169 gaaaggacattggcaccaaag 171149
>ref|NM_001011547.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter), member 9 (SLC5A9), mRNA Length = 3227 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggaggatacaagaaaagga 285 |||||||||||||||||||| Sbjct: 2474 tggaggatacaagaaaagga 2493
>gb|BC048332.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter), member 9, mRNA (cDNA clone IMAGE:5189864), with apparent retained intron Length = 3844 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggaggatacaagaaaagga 285 |||||||||||||||||||| Sbjct: 2996 tggaggatacaagaaaagga 3015
>ref|XM_746941.1| Aspergillus fumigatus Af293 pitrilysin family metalloprotease Cym1 (Afu4g07910) partial mRNA Length = 3198 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 agtagagataattggcatct 265 |||||||||||||||||||| Sbjct: 727 agtagagataattggcatct 708
>gb|AC122450.4| Mus musculus BAC clone RP24-249K4 from chromosome 1, complete sequence Length = 154695 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tagagattcaaaacggaact 172 |||||||||||||||||||| Sbjct: 117648 tagagattcaaaacggaact 117667
>emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chromosome 10 Contains a novel gene, complete sequence Length = 113271 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 gatacaagaaaaggaaatgt 290 |||||||||||||||||||| Sbjct: 71782 gatacaagaaaaggaaatgt 71801
>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete sequence Length = 166509 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gaggatacaagaaaaggaaa 287 |||||||||||||||||||| Sbjct: 101325 gaggatacaagaaaaggaaa 101306
>emb|AL109659.20|HSJ1024N4 Human DNA sequence from clone RP5-1024N4 on chromosome 1p32.1-33 Contains two novel genes, a novel pseudogene, a novel gene (LOC200010), a novel gene similar to connexin and one CpG island, complete sequence Length = 181678 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tggaggatacaagaaaagga 285 |||||||||||||||||||| Sbjct: 35569 tggaggatacaagaaaagga 35550
>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7/17 Length = 348813 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 cctgtatccattcctcaata 31 |||||||||||||||||||| Sbjct: 317387 cctgtatccattcctcaata 317406
>gb|BC025411.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter), member 9, mRNA (cDNA clone IMAGE:4827595) Length = 2007 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggaggatacaagaaaagga 285 |||||||||||||||||||| Sbjct: 1246 tggaggatacaagaaaagga 1265
>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20 Length = 103889 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 aaaatcatcaaaatcaaagtttaa 380 ||||| |||||||||||||||||| Sbjct: 76629 aaaattatcaaaatcaaagtttaa 76652
>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete sequence Length = 174250 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gtaccagtgccggaattaaccaag 103 ||||||||||| |||||||||||| Sbjct: 22243 gtaccagtgccagaattaaccaag 22220
>dbj|AK131200.1| Homo sapiens cDNA FLJ16055 fis, clone SMINT2010324, moderately similar to SODIUM/GLUCOSE COTRANSPORTER 1 Length = 3148 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggaggatacaagaaaagga 285 |||||||||||||||||||| Sbjct: 2399 tggaggatacaagaaaagga 2418
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR06C11, complete sequence Length = 174500 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ggaaaggacattggcaccaa 126 |||||||||||||||||||| Sbjct: 165900 ggaaaggacattggcaccaa 165881
>emb|BX648549.1|HSM808697 Homo sapiens mRNA; cDNA DKFZp779B1826 (from clone DKFZp779B1826) Length = 3248 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggaggatacaagaaaagga 285 |||||||||||||||||||| Sbjct: 2475 tggaggatacaagaaaagga 2494
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ggaaaggacattggcaccaa 126 |||||||||||||||||||| Sbjct: 33885 ggaaaggacattggcaccaa 33866
>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete sequence Length = 251192 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ggaaaggacattggcaccaa 126 |||||||||||||||||||| Sbjct: 196397 ggaaaggacattggcaccaa 196378
>emb|AL732426.6| Mouse DNA sequence from clone RP23-132J17 on chromosome X, complete sequence Length = 140199 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aattaaccaaggaaggaaag 112 |||||||||||||||||||| Sbjct: 25948 aattaaccaaggaaggaaag 25967 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,713,635 Number of Sequences: 3902068 Number of extensions: 3713635 Number of successful extensions: 144217 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 144114 Number of HSP's gapped (non-prelim): 103 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)