ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COBS_RHILO (Q98KP0) Cobalamin synthase (EC 2.-.-.-) 33 0.27
2IF2_CAUCR (Q9AC25) Translation initiation factor IF-2 31 1.0
3ENL_HUMAN (Q03111) Protein ENL 30 1.4
4TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase ... 29 3.0
5SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot... 29 4.0
6IF2_CHRVO (Q7NY13) Translation initiation factor IF-2 29 4.0
7EXO84_YARLI (Q6C238) Exocyst complex component EXO84 28 6.8
8SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 28 6.8

>COBS_RHILO (Q98KP0) Cobalamin synthase (EC 2.-.-.-)|
          Length = 259

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  LAAASWVEPAPGILPPKIGTISLFSAARFGVGRG 119
           LAAA W  P  G+L   IG I   +A RFG+  G
Sbjct: 39  LAAAIWAAPVAGLLVGLIGAIVFATAERFGLAMG 72



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>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 158 PTRPGTAPFSDRIPSPDAKSSRGKKRNRPD 69
           P   G  PF+ R P PDA ++ G++  RP+
Sbjct: 225 PAPQGDRPFNQRAPRPDANANFGQRAPRPE 254



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>ENL_HUMAN (Q03111) Protein ENL|
          Length = 559

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 170 PGLNPTRPGTAPFSDRIPSPDAKSSRGKK 84
           PG +P    ++ FSD+ P+ D  S+RG+K
Sbjct: 312 PGTSPRTSSSSSFSDKKPAKDKSSTRGEK 340



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>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 817

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 167 GLNPTRPGTAPFSDRIPSPDAKSSRGKKRN 78
           G NP +P T P  +  P PD +S RG  R+
Sbjct: 13  GGNPLQPPTTPSPEPEPEPDGRSRRGGGRS 42



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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3259

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 167  GLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 63
            G  P++   AP  + +PSP  +S  G    RP+LR
Sbjct: 1982 GRAPSKDQEAPSPEALPSPGQESPDGPSPRRPELR 2016



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>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
 Frame = -2

Query: 169 PG*TRRGPEQPHFQIEFPLPTPNLAAEKREIVPIFGGRMPGAG------STHDAAARGRG 8
           PG   RGP         P P P  AA  +   P  GG  PG G      S  D    GRG
Sbjct: 284 PGGDNRGPRPAGAGDRGPRPAPAAAAPSQPPAPAPGGSRPGKGKKGGERSWDDNKKGGRG 343



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>EXO84_YARLI (Q6C238) Exocyst complex component EXO84|
          Length = 657

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 145 EQPHFQIEFPLPTPNLAAEKREIVPI-----FGGRMPGAGSTHDAAA 20
           ++P+ Q    L  PN+  + RE V       F  R+PG G  +DAAA
Sbjct: 29  QKPYIQDSTHLQLPNVGDKDRERVGNMVKRRFSARIPGQGVPYDAAA 75



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 158  PTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 63
            P++   AP  + +PSP  +S  G    RP+LR
Sbjct: 1985 PSKDQEAPSPEALPSPGQESPDGPSPRRPELR 2016


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,226,860
Number of Sequences: 219361
Number of extensions: 598670
Number of successful extensions: 2199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2199
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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