ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
2dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
3dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
4gb|AF321865.1|AF321865 Lolium rigidum clone Lol-2 putative cytoc... 90 8e-15
5dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.41
6ref|XM_631255.1| Dictyostelium discoideum hypothetical protein (... 42 1.6
7ref|NM_197343.1| Oryza sativa (japonica cultivar-group) putative... 42 1.6
8ref|NM_197342.1| Oryza sativa (japonica cultivar-group) putative... 42 1.6
9gb|AY486477.1|AY486470S08 Human herpesvirus 5 strain Toledo geno... 42 1.6
10gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.6
11gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete s... 42 1.6
12gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete seq... 42 1.6
13gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequ... 42 1.6
14gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete ... 42 1.6
15gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequ... 42 1.6
16gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete s... 42 1.6
17gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome 42 1.6
18emb|BX046757.1|CNS0988P Single read from an extremity of a full-... 42 1.6
19emb|BX030338.1|CNS08VKM Single read from an extremity of a full-... 42 1.6
20emb|BX005899.1|CNS08CPR Single read from an extremity of a full-... 42 1.6
21emb|BX005898.1|CNS08CPQ Single read from an extremity of a full-... 42 1.6
22emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complet... 42 1.6
23emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp... 42 1.6
24gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 42 1.6
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
26gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
27dbj|AK119487.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
28ref|XM_309223.2| Anopheles gambiae str. PEST ENSANGP00000023250 ... 42 1.6
29dbj|AK105678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
30gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
31ref|XM_476192.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
32gb|BC078109.1| Xenopus laevis MGC83599 protein, mRNA (cDNA clone... 40 6.4
33gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.4
34gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
35gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
36gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome 40 6.4
37gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome... 40 6.4
38ref|XM_993831.1| PREDICTED: Mus musculus similar to RIKEN cDNA B... 40 6.4
39ref|XM_993816.1| PREDICTED: Mus musculus RIKEN cDNA B830028B13 g... 40 6.4
40ref|XM_001004753.1| PREDICTED: Mus musculus similar to RIKEN cDN... 40 6.4
41ref|XM_894743.2| PREDICTED: Mus musculus RIKEN cDNA B830028B13 g... 40 6.4
42ref|XM_798903.1| Trypanosoma cruzi strain CL Brener surface prot... 40 6.4
43gb|AC136515.3| Mus musculus BAC clone RP23-212G1 from chromosome... 40 6.4
44gb|AC127574.3| Mus musculus BAC clone RP24-240K8 from chromosome... 40 6.4
45ref|XM_811215.1| Trypanosoma cruzi strain CL Brener surface prot... 40 6.4
46gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Ca... 40 6.4
47gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete ... 40 6.4
48emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosyntheti... 40 6.4
49dbj|AK140373.1| Mus musculus adult male cortex cDNA, RIKEN full-... 40 6.4
50gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 6.4
51gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome... 40 6.4
52dbj|AK046846.1| Mus musculus 10 days neonate medulla oblongata c... 40 6.4
53dbj|AK046823.1| Mus musculus 10 days neonate medulla oblongata c... 40 6.4
54dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
55gb|AC024230.5| Homo sapiens BAC clone RP11-96B10 from 4, complet... 40 6.4
56gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, comp... 40 6.4
57gb|AF064528.1|AF064528 Rhodocista centenaria 3-methylcrotonyl-Co... 40 6.4
58dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosyntheti... 40 6.4
59dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
60dbj|AK109172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
61gb|AY105649.1| Zea mays PCO086826 mRNA sequence 40 6.4
62gb|BC084963.1| Xenopus laevis hypothetical LOC495441, mRNA (cDNA... 40 6.4
63gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.4
64emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin bio... 40 6.4
65gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 6.4 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/155 (90%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                          
Query: 255    tccatcttccaccttgcgccgctcctccgcgacctgcacgcgcgctacggccccgtcatc 314
              ||||||||| |||| |  ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489099 tccatcttcgacctcggcccgctcctccgcgacctgcacgcgcgccacggccccgtcatc 489158

                                                                          
Query: 315    tccatccgcctcttccg---cgccctcgtctttgtctccgaccgccgcctcgcccatcgc 371
              ||||||||||||||| |   | |||||||||| ||| ||||||||||||||||||| |||
Sbjct: 489159 tccatccgcctcttcggcaccaccctcgtcttcgtcgccgaccgccgcctcgcccaccgc 489218

                                                 
Query: 372    gtcctcgtccagggcggctccaccttcgccgaccg 406
              |  ||||||||||||||||||||||||||||||||
Sbjct: 489219 gcactcgtccagggcggctccaccttcgccgaccg 489253
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>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/155 (90%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                         
Query: 255   tccatcttccaccttgcgccgctcctccgcgacctgcacgcgcgctacggccccgtcatc 314
             ||||||||| |||| |  ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 85340 tccatcttcgacctcggcccgctcctccgcgacctgcacgcgcgccacggccccgtcatc 85399

                                                                         
Query: 315   tccatccgcctcttccg---cgccctcgtctttgtctccgaccgccgcctcgcccatcgc 371
             ||||||||||||||| |   | |||||||||| ||| ||||||||||||||||||| |||
Sbjct: 85400 tccatccgcctcttcggcaccaccctcgtcttcgtcgccgaccgccgcctcgcccaccgc 85459

                                                
Query: 372   gtcctcgtccagggcggctccaccttcgccgaccg 406
             |  ||||||||||||||||||||||||||||||||
Sbjct: 85460 gcactcgtccagggcggctccaccttcgccgaccg 85494
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>dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123G02, full
           insert sequence
          Length = 1700

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/155 (90%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                       
Query: 255 tccatcttccaccttgcgccgctcctccgcgacctgcacgcgcgctacggccccgtcatc 314
           ||||||||| |||| |  ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 188 tccatcttcgacctcggcccgctcctccgcgacctgcacgcgcgccacggccccgtcatc 247

                                                                       
Query: 315 tccatccgcctcttccg---cgccctcgtctttgtctccgaccgccgcctcgcccatcgc 371
           ||||||||||||||| |   | |||||||||| ||| ||||||||||||||||||| |||
Sbjct: 248 tccatccgcctcttcggcaccaccctcgtcttcgtcgccgaccgccgcctcgcccaccgc 307

                                              
Query: 372 gtcctcgtccagggcggctccaccttcgccgaccg 406
           |  ||||||||||||||||||||||||||||||||
Sbjct: 308 gcactcgtccagggcggctccaccttcgccgaccg 342
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>gb|AF321865.1|AF321865 Lolium rigidum clone Lol-2 putative cytochrome P450 mRNA, partial
           cds
          Length = 1702

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                       
Query: 284 cgacctgcacgcgcgctacggccccgtcatctccatccgcctcttccgcgccctcgtctt 343
           |||||| ||||||||| ||||||||||||||||||||| |||||||||| | ||| ||||
Sbjct: 165 cgacctccacgcgcgccacggccccgtcatctccatccacctcttccgcacgctcatctt 224

                                                                    
Query: 344 tgtctccgaccgccgcctcgcccatcgcgtcctcgtccagggcggctccaccttcgc 400
            ||  ||||||||    | ||||| ||||  ||||||||||||||| ||||||||||
Sbjct: 225 cgtggccgaccgcaagatggcccaccgcgcgctcgtccagggcggcgccaccttcgc 281
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 351     gaccgccgcctcgcccatcgcg 372
               ||||||||||||||||||||||
Sbjct: 6393918 gaccgccgcctcgcccatcgcg 6393939
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>ref|XM_631255.1| Dictyostelium discoideum hypothetical protein (DDB0188318), partial
           mRNA
          Length = 1587

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 204 caagatcatcaataaaatctttgat 228
           ||||||||||||||||| |||||||
Sbjct: 241 caagatcatcaataaaaactttgat 217
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>ref|NM_197343.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450
           (OSJNBa0026L12.20), mRNA
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 336 ctcgtctttgtctccgaccgccgcctcgc 364
           |||||||| ||| ||||||||||||||||
Sbjct: 241 ctcgtcttcgtcgccgaccgccgcctcgc 269
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>ref|NM_197342.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450
           (OSJNBa0026L12.5), mRNA
          Length = 1572

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 336 ctcgtctttgtctccgaccgccgcctcgc 364
           |||||||| ||| ||||||||||||||||
Sbjct: 247 ctcgtcttcgtcgccgaccgccgcctcgc 275
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>gb|AY486477.1|AY486470S08 Human herpesvirus 5 strain Toledo genome, partial sequence
          Length = 24216

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 359  cctcgcccatcgcgtcctcgtccag 383
            ||||||||||| |||||||||||||
Sbjct: 2047 cctcgcccatctcgtcctcgtccag 2023
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    accgccgcctcgcccatcgcg 372
              |||||||||||||||||||||
Sbjct: 661184 accgccgcctcgcccatcgcg 661204
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>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence
          Length = 233739

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 359   cctcgcccatcgcgtcctcgtccag 383
             ||||||||||| |||||||||||||
Sbjct: 88572 cctcgcccatctcgtcctcgtccag 88596
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>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence
          Length = 229209

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 359   cctcgcccatcgcgtcctcgtccag 383
             ||||||||||| |||||||||||||
Sbjct: 94851 cctcgcccatctcgtcctcgtccag 94875
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>gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequence
          Length = 234881

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 359    cctcgcccatcgcgtcctcgtccag 383
              ||||||||||| |||||||||||||
Sbjct: 169069 cctcgcccatctcgtcctcgtccag 169045
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>gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete sequence
          Length = 226889

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 359   cctcgcccatcgcgtcctcgtccag 383
             ||||||||||| |||||||||||||
Sbjct: 90259 cctcgcccatctcgtcctcgtccag 90283
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>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence
          Length = 229700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 359   cctcgcccatcgcgtcctcgtccag 383
             ||||||||||| |||||||||||||
Sbjct: 94938 cctcgcccatctcgtcctcgtccag 94962
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>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence
          Length = 229483

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 359    cctcgcccatcgcgtcctcgtccag 383
              ||||||||||| |||||||||||||
Sbjct: 166548 cctcgcccatctcgtcctcgtccag 166524
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>gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome
          Length = 231236

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 359    cctcgcccatcgcgtcctcgtccag 383
              ||||||||||| |||||||||||||
Sbjct: 131521 cctcgcccatctcgtcctcgtccag 131497
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>emb|BX046757.1|CNS0988P Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC20CB11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 604

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 356 ccgcctcgcccatcgcgtcct 376
           |||||||||||||||||||||
Sbjct: 488 ccgcctcgcccatcgcgtcct 508
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>emb|BX030338.1|CNS08VKM Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA45BB10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 800

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 356 ccgcctcgcccatcgcgtcct 376
           |||||||||||||||||||||
Sbjct: 483 ccgcctcgcccatcgcgtcct 503
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>emb|BX005899.1|CNS08CPR Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA10AD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 789

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 356 ccgcctcgcccatcgcgtcct 376
           |||||||||||||||||||||
Sbjct: 497 ccgcctcgcccatcgcgtcct 517
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>emb|BX005898.1|CNS08CPQ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA10AD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 927

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 356 ccgcctcgcccatcgcgtcct 376
           |||||||||||||||||||||
Sbjct: 807 ccgcctcgcccatcgcgtcct 787
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>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome
          Length = 229354

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 359    cctcgcccatcgcgtcctcgtccag 383
              ||||||||||| |||||||||||||
Sbjct: 132074 cctcgcccatctcgtcctcgtccag 132050
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>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 22      cacttcctccatctccatccc 42
               |||||||||||||||||||||
Sbjct: 1027213 cacttcctccatctccatccc 1027193
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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 336   ctcgtctttgtctccgaccgccgcctcgc 364
             |||||||| ||| ||||||||||||||||
Sbjct: 36496 ctcgtcttcgtcgccgaccgccgcctcgc 36468



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 336   ctcgtctttgtctccgaccgccgcctcgc 364
             |||||||| ||| ||||||||||||||||
Sbjct: 29948 ctcgtcttcgtcgccgaccgccgcctcgc 29976
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 336      ctcgtctttgtctccgaccgccgcctcgc 364
                |||||||| ||| ||||||||||||||||
Sbjct: 19346433 ctcgtcttcgtcgccgaccgccgcctcgc 19346405



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 336      ctcgtctttgtctccgaccgccgcctcgc 364
                |||||||| ||| ||||||||||||||||
Sbjct: 19339885 ctcgtcttcgtcgccgaccgccgcctcgc 19339913
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 347    ctccgaccgccgcctcgcccatcgcgtcc 375
              ||||||||||||||||||| ||| |||||
Sbjct: 585320 ctccgaccgccgcctcgccgatcacgtcc 585348
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>dbj|AK119487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-C08, full
            insert sequence
          Length = 1699

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 336  ctcgtctttgtctccgaccgccgcctcgc 364
            |||||||| ||| ||||||||||||||||
Sbjct: 1274 ctcgtcttcgtcgccgaccgccgcctcgc 1246
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>ref|XM_309223.2| Anopheles gambiae str. PEST ENSANGP00000023250 (ENSANGG00000021013),
            partial mRNA
          Length = 1278

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  ccgcctcgcccatcgcgtcct 376
            |||||||||||||||||||||
Sbjct: 1186 ccgcctcgcccatcgcgtcct 1166
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>dbj|AK105678.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B02, full
           insert sequence
          Length = 1899

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 336 ctcgtctttgtctccgaccgccgcctcgc 364
           |||||||| ||| ||||||||||||||||
Sbjct: 277 ctcgtcttcgtcgccgaccgccgcctcgc 305
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 336      ctcgtctttgtctccgaccgccgcctcgc 364
                |||||||| ||| ||||||||||||||||
Sbjct: 19357709 ctcgtcttcgtcgccgaccgccgcctcgc 19357681



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 336      ctcgtctttgtctccgaccgccgcctcgc 364
                |||||||| ||| ||||||||||||||||
Sbjct: 19351161 ctcgtcttcgtcgccgaccgccgcctcgc 19351189
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>ref|XM_476192.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  tcctccatctccatcccctc 45
           ||||||||||||||||||||
Sbjct: 260 tcctccatctccatcccctc 241
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>gb|BC078109.1| Xenopus laevis MGC83599 protein, mRNA (cDNA clone MGC:83599
           IMAGE:5083771), complete cds
          Length = 3047

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  ctcacttcctccatctccat 39
           ||||||||||||||||||||
Sbjct: 727 ctcacttcctccatctccat 746
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 356   ccgcctcgcccatcgcgtcctcgtccag 383
             ||||||||||||||||| ||||| ||||
Sbjct: 97206 ccgcctcgcccatcgcgccctcgaccag 97179
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>gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0043H23, complete sequence
          Length = 134097

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    tcctccatctccatcccctc 45
             ||||||||||||||||||||
Sbjct: 35260 tcctccatctccatcccctc 35241
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>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08,
             complete sequence
          Length = 152527

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    tcctccatctccatcccctc 45
             ||||||||||||||||||||
Sbjct: 70738 tcctccatctccatcccctc 70719
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>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome
          Length = 235645

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 359    cctcgcccatcgcgtcctcgtcca 382
              ||||||||||| ||||||||||||
Sbjct: 133381 cctcgcccatctcgtcctcgtcca 133358
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>gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome 14, complete sequence
          Length = 207264

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     cttcctccatctccatcccc 43
              ||||||||||||||||||||
Sbjct: 177184 cttcctccatctccatcccc 177165
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>ref|XM_993831.1| PREDICTED: Mus musculus similar to RIKEN cDNA B830028B13 gene
            (LOC671612), mRNA
          Length = 2396

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  ggcgactggcgcgcagctcc 187
            ||||||||||||||||||||
Sbjct: 2387 ggcgactggcgcgcagctcc 2368
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>ref|XM_993816.1| PREDICTED: Mus musculus RIKEN cDNA B830028B13 gene (B830028B13Rik),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 ggcgactggcgcgcagctcc 187
           ||||||||||||||||||||
Sbjct: 162 ggcgactggcgcgcagctcc 181
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>ref|XM_001004753.1| PREDICTED: Mus musculus similar to RIKEN cDNA B830028B13 gene
            (LOC668693), mRNA
          Length = 2396

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  ggcgactggcgcgcagctcc 187
            ||||||||||||||||||||
Sbjct: 2387 ggcgactggcgcgcagctcc 2368
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>ref|XM_894743.2| PREDICTED: Mus musculus RIKEN cDNA B830028B13 gene (B830028B13Rik),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 ggcgactggcgcgcagctcc 187
           ||||||||||||||||||||
Sbjct: 162 ggcgactggcgcgcagctcc 181
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>ref|XM_798903.1| Trypanosoma cruzi strain CL Brener surface protease GP63
            (Tc00.1047053504015.30) partial mRNA
          Length = 2382

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 26   tcctccatctccatcccctcgaga 49
            ||||||| ||||||||||||||||
Sbjct: 1142 tcctccagctccatcccctcgaga 1119
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>gb|AC136515.3| Mus musculus BAC clone RP23-212G1 from chromosome 7, complete sequence
          Length = 208084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    ggcgactggcgcgcagctcc 187
              ||||||||||||||||||||
Sbjct: 161449 ggcgactggcgcgcagctcc 161468
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>gb|AC127574.3| Mus musculus BAC clone RP24-240K8 from chromosome 7, complete sequence
          Length = 176711

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ggcgactggcgcgcagctcc 187
             ||||||||||||||||||||
Sbjct: 98684 ggcgactggcgcgcagctcc 98665
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>ref|XM_811215.1| Trypanosoma cruzi strain CL Brener surface protease GP63
           (Tc00.1047053506613.9) partial mRNA
          Length = 929

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 26  tcctccatctccatcccctcgaga 49
           ||||||| ||||||||||||||||
Sbjct: 905 tcctccagctccatcccctcgaga 882
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>gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158603

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ccctcacttcctccatctcc 37
             ||||||||||||||||||||
Sbjct: 57811 ccctcacttcctccatctcc 57792



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ccctcacttcctccatctcc 37
             ||||||||||||||||||||
Sbjct: 57792 ccctcacttcctccatctcc 57773
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>gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete sequence
          Length = 121026

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  agatcatcaataaaatcttt 225
            ||||||||||||||||||||
Sbjct: 1683 agatcatcaataaaatcttt 1702
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>emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain
             ATCC12853
          Length = 47050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   cccgaccgcgccgtcggcga 172
             ||||||||||||||||||||
Sbjct: 30363 cccgaccgcgccgtcggcga 30344
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>dbj|AK140373.1| Mus musculus adult male cortex cDNA, RIKEN full-length enriched
           library, clone:B530004C07 product:hypothetical protein,
           full insert sequence
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 ggcgactggcgcgcagctcc 187
           ||||||||||||||||||||
Sbjct: 163 ggcgactggcgcgcagctcc 182
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     ccgccgcctcgcccatcgcg 372
               ||||||||||||||||||||
Sbjct: 2353259 ccgccgcctcgcccatcgcg 2353278
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>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence
          Length = 234665

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     cttcctccatctccatcccc 43
              ||||||||||||||||||||
Sbjct: 233166 cttcctccatctccatcccc 233185
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>dbj|AK046846.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
           full-length enriched library, clone:B830028B13
           product:hypothetical protein, full insert sequence
          Length = 3354

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 ggcgactggcgcgcagctcc 187
           ||||||||||||||||||||
Sbjct: 39  ggcgactggcgcgcagctcc 58
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>dbj|AK046823.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
           full-length enriched library, clone:B830015J03
           product:unclassifiable, full insert sequence
          Length = 2400

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 ggcgactggcgcgcagctcc 187
           ||||||||||||||||||||
Sbjct: 11  ggcgactggcgcgcagctcc 30
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      tcctccatctccatcccctc 45
               ||||||||||||||||||||
Sbjct: 7332483 tcctccatctccatcccctc 7332464
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>gb|AC024230.5| Homo sapiens BAC clone RP11-96B10 from 4, complete sequence
          Length = 160269

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     tcctccatctccatcccctc 45
              ||||||||||||||||||||
Sbjct: 140853 tcctccatctccatcccctc 140834
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>gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, complete sequence
          Length = 188506

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     cacttcctccatctccatcc 41
              ||||||||||||||||||||
Sbjct: 116462 cacttcctccatctccatcc 116443
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>gb|AF064528.1|AF064528 Rhodocista centenaria 3-methylcrotonyl-CoA carboxylase gene,
           partial cds; phototransducer (ptr) gene, complete cds;
           and unknown gene
          Length = 4743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 cgaccgccgcctcgcccatc 369
           ||||||||||||||||||||
Sbjct: 131 cgaccgccgcctcgcccatc 112
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>dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster,
             complete cds
          Length = 25467

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   cccgaccgcgccgtcggcga 172
             ||||||||||||||||||||
Sbjct: 12959 cccgaccgcgccgtcggcga 12940
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>dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D12, full
           insert sequence
          Length = 1535

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  tcctccatctccatcccctc 45
           ||||||||||||||||||||
Sbjct: 526 tcctccatctccatcccctc 507
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>dbj|AK109172.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H07, full
           insert sequence
          Length = 707

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  tcctccatctccatcccctc 45
           ||||||||||||||||||||
Sbjct: 468 tcctccatctccatcccctc 449
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>gb|AY105649.1| Zea mays PCO086826 mRNA sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 gggcggctccaccttcgccg 402
           ||||||||||||||||||||
Sbjct: 23  gggcggctccaccttcgccg 4
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>gb|BC084963.1| Xenopus laevis hypothetical LOC495441, mRNA (cDNA clone MGC:84064
           IMAGE:6948544), complete cds
          Length = 3190

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  ctcacttcctccatctccat 39
           ||||||||||||||||||||
Sbjct: 876 ctcacttcctccatctccat 895
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 385     gcggctccaccttcgccgac 404
               ||||||||||||||||||||
Sbjct: 2971865 gcggctccaccttcgccgac 2971884
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>emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin biosynthesis gene cluster,
             strain DSM 40500
          Length = 41576

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   cccgaccgcgccgtcggcga 172
             ||||||||||||||||||||
Sbjct: 27023 cccgaccgcgccgtcggcga 27004
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     ccgccgcctcgcccatcgcg 372
               ||||||||||||||||||||
Sbjct: 1730024 ccgccgcctcgcccatcgcg 1730043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,906,545
Number of Sequences: 3902068
Number of extensions: 2906545
Number of successful extensions: 73785
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72802
Number of HSP's gapped (non-prelim): 979
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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