ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 s... 68 8e-12
2IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 s... 62 5e-10
3IF38_SCHPO (O14164) Probable eukaryotic translation initiation f... 42 6e-04
4IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 s... 38 0.009
5IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 9... 37 0.025
6IF38_CAEEL (O02328) Probable eukaryotic translation initiation f... 33 0.36
7PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3 32 0.61
8VNUA_PRVKA (P33485) Probable nuclear antigen 31 1.0
9GSBN_DROME (P09083) Protein gooseberry-neuro (Protein gooseberry... 31 1.0
10ZN37A_HUMAN (P17032) Zinc finger protein 37A (Zinc finger protei... 31 1.4
11AMEL_MONDO (Q28462) Amelogenin 30 1.8
12TSSC1_MACFA (Q4R571) Protein TSSC1 30 1.8
13TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromos... 30 1.8
14TSSC1_PONPY (Q5RE10) Protein TSSC1 30 1.8
15IWS1_MOUSE (Q8C1D8) IWS1-like protein 30 2.3
16PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog ... 30 2.3
17STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2) 29 3.9
18Y564_TREPA (O83575) Hypothetical protein TP0564 29 5.2
19IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein ... 29 5.2
20RRP3_ASPFU (Q4WJE9) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-) 29 5.2
21SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouc... 29 5.2
22CASB_BOVIN (P02666) Beta-casein precursor 29 5.2
23AMEL_CAVPO (Q9Z0K9) Amelogenin precursor 29 5.2
24BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot... 28 6.7
25SSRP_MYCLE (O32881) SsrA-binding protein 28 6.7
26FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related pr... 28 6.7
27IRBP_BOVIN (P12661) Interphotoreceptor retinoid-binding protein ... 28 8.8
28DBP10_ASHGO (Q757U8) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-) 28 8.8
29ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation m... 28 8.8
30AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich... 28 8.8
31AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-ri... 28 8.8
32TSSC1_RAT (Q5PPK9) Protein TSSC1 28 8.8
33TSCC1_MOUSE (Q8K0G5) Protein TSSC1 28 8.8

>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c) (p105)
          Length = 900

 Score = 68.2 bits (165), Expect = 8e-12
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +2

Query: 239 EAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418
           E  +   D   NRYL     DD DT++ RV++  KDKR +EM  T DQM+NAMKINDW+S
Sbjct: 22  EVNEVQNDDVNNRYLQSGSEDDDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVS 81

Query: 419 L 421
           L
Sbjct: 82  L 82



to top

>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 935

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
 Frame = +2

Query: 224 DSEKSEAGDGGRDVS-KNRYLHREDSDDSDTES--HRVIRSLKDKRNDEMKATADQMRNA 394
           D E S+      D + K++YL   ++DDSD +    RV++S KDKR DEM +T DQ++NA
Sbjct: 23  DDEPSDTEPAPTDPNGKSKYLAGGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNA 82

Query: 395 MKINDWLSL 421
           +KINDW+SL
Sbjct: 83  IKINDWVSL 91



to top

>IF38_SCHPO (O14164) Probable eukaryotic translation initiation factor 3 93 kDa|
           subunit (eIF3 p93)
          Length = 918

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +2

Query: 230 EKSEAGDGGRDVSKNRYLHREDSDDS--DTESHRVIRSLKDKRNDEMKATADQMRNAMKI 403
           EK EA   G      ++L  E S++S  + E  RV++S KDKR +E  +  + ++NAM  
Sbjct: 142 EKEEAKPAGL-----KFLRGESSEESSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSS 196

Query: 404 NDWL 415
           N+W+
Sbjct: 197 NNWI 200



to top

>IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 913

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = +2

Query: 224 DSEKSEAGDG------GRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 385
           +SE S +G+       G +  K   L  ED +D+     RV+RS KDKR +E+      +
Sbjct: 12  ESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTK----RVVRSAKDKRFEELTNLIRTI 67

Query: 386 RNAMKIND 409
           RNAMKI D
Sbjct: 68  RNAMKIRD 75



to top

>IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 93 kDa subunit|
           (eIF3 p93) (Nuclear transport protein NIP1)
          Length = 812

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +2

Query: 227 SEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKIN 406
           SE  + G G     K+      D +  + +  +V++S K+K  DEM+   +++  A   +
Sbjct: 78  SEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLLDEMQDVYNKISQAENSD 137

Query: 407 DWLSL 421
           DWL++
Sbjct: 138 DWLTI 142



to top

>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3|
           subunit 8 (eIF3 p110) (eIF3c)
          Length = 898

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 224 DSEKSEAGDGGRDVSKNRYLHREDSDD----SDTESHRVIRSLKDKRNDEMKATADQMRN 391
           DS+ S + D   D   N+     D  D     + +  RV+R+ KDK+ DE+K    Q R+
Sbjct: 12  DSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRD 71

Query: 392 AMKIND 409
           A    D
Sbjct: 72  AKSNKD 77



to top

>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -3

Query: 251 HHQLLIFHYRSLVL-----TQSRPPPPQSHCLPVPKN 156
           HHQLL+   +  +      + S+ PPP  HC+P+P +
Sbjct: 319 HHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355



to top

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
 Frame = -3

Query: 362 SHHCACPSTSESHDGSQYQSRHCP----------LYANSGSWTHHD-PHHQLLIFHYRSL 216
           SH  + PST+ + D    Q  H P              SG W     P     +F    L
Sbjct: 8   SHRLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITTSGRWLQRQFPVLTTTVFFSLFL 67

Query: 215 VLTQSRPPPPQSHCLPVPKNE 153
                 P PPQ H  P P  +
Sbjct: 68  SFPPHPPRPPQDHHRPTPARD 88



to top

>GSBN_DROME (P09083) Protein gooseberry-neuro (Protein gooseberry proximal)|
           (BSH4)
          Length = 449

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 248 DGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 385
           DG +D + N  L   DSD SDTES   I   + +R      TA+Q+
Sbjct: 149 DGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQL 194



to top

>ZN37A_HUMAN (P17032) Zinc finger protein 37A (Zinc finger protein KOX21)|
          Length = 561

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
 Frame = -3

Query: 269 WTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP-------KNEMPWLLFVCFPS 120
           W H DP  + L   YR ++L          +C+P P       K E PW+L   FPS
Sbjct: 22  WQHLDPAQRTL---YRDVMLENYSHLVSVGYCIPKPEVILKLEKGEEPWILEEKFPS 75



to top

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
 Frame = -3

Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162
           Y   G W HH           P H L   H+  ++  Q +P PPQ   +PVP
Sbjct: 39  YEPMGGWLHHQIIPVLSQQHSPSHSLPPQHHIPIMAAQ-QPAPPQQPVMPVP 89



to top

>TSSC1_MACFA (Q4R571) Protein TSSC1|
          Length = 387

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418
           +S   + H  D DD SD E HR     K+   D + AT ++  +++   DW S
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357



to top

>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal|
           transferable fragment candidate gene 1 protein)
           (Tumor-suppressing STF cDNA 1 protein)
          Length = 387

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418
           +S   + H  D DD SD E HR     K+   D + AT ++  +++   DW S
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357



to top

>TSSC1_PONPY (Q5RE10) Protein TSSC1|
          Length = 414

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418
           +S   + H  D DD SD E HR     K+   D + AT ++  +++   DW S
Sbjct: 332 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 384



to top

>IWS1_MOUSE (Q8C1D8) IWS1-like protein|
          Length = 766

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +2

Query: 224 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKI 403
           DSE  E  +     S++  LHR    DSD+E H       D  N+ +        N   +
Sbjct: 68  DSENDEPSNANASDSESEELHRPKDSDSDSEEH-AESPASDSENEPVNQHGSDSENEELL 126

Query: 404 N 406
           N
Sbjct: 127 N 127



to top

>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of|
           polyhomeotic 3) (Early development regulatory protein 3)
          Length = 983

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 365 SSHHCACPST-SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQS-RPP 192
           S H    P++ S     S  + +  PL++     +HH    Q      + + L  S + P
Sbjct: 287 SIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQNSTQDP 346

Query: 191 PPQSHCLPVPKNEMP 147
           PP  HC+P+  + +P
Sbjct: 347 PPSQHCIPLQNHGLP 361



to top

>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 129

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 365 SSHHCACP-STSESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPP 189
           SSH   C  S S+S   SQ  + H   +++SG  +   PH  L   H +    +   PP 
Sbjct: 32  SSHCQTCSQSCSQSRSSSQSPTGH---HSSSGHQSQ-SPHPTLPPRHQKHTRHSHHCPPR 87

Query: 188 PQSHCLPVPKN 156
           P +H    PKN
Sbjct: 88  PTTHSCSYPKN 98



to top

>Y564_TREPA (O83575) Hypothetical protein TP0564|
          Length = 678

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
 Frame = -3

Query: 362 SHHCACPSTSESHDGSQYQSRHCPL-------YANSGSWTHHDPHHQLLI-FHYRSLVLT 207
           +H   CP            S H P+         +   W H DP H L I  H  ++ + 
Sbjct: 125 AHRTVCPPWLLQAVYQHLTSHHVPIRYRDFDAILHRLGWLHEDPRHALYIKEHIPAVRME 184

Query: 206 QSRPPPPQSHCLP 168
            S  PP   H LP
Sbjct: 185 NSLYPPGALHTLP 197



to top

>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor|
           (IRBP) (Interstitial retinol-binding protein)
          Length = 1247

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 248 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 126
           H+LL+FH    ++ +  PPPP +  +P P+ E+ +L+   F
Sbjct: 697 HRLLVFHSPGELVVEEAPPPPPA--VPSPE-ELTYLIEALF 734



to top

>RRP3_ASPFU (Q4WJE9) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)|
          Length = 472

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 257 RDVSKNRYLHR---EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 400
           RDV K +  H      SD   T SH+ +    D    + +ATA + R A K
Sbjct: 2   RDVKKRKIAHEAPEHGSDTESTSSHKSVAQQDDPLETQDEATATESRPAPK 52



to top

>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -3

Query: 314 QYQSRHCPLYANSGSWTHHDPH-----HQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162
           Q+Q    P + +S    H  PH     H   +FH R+   + + PP P +  L  P
Sbjct: 206 QHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPP 261



to top

>CASB_BOVIN (P02666) Beta-casein precursor|
          Length = 224

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 335 SESHDGSQYQSRHCPLYANSGSWTH--HDPHHQLLIFHYRSLV-LTQSRPPPPQSHCLPV 165
           S+S   +  ++ H PL     SW H  H P    ++F  +S++ L+QS+  P     +P 
Sbjct: 137 SQSLTLTDVENLHLPLPLLQ-SWMHQPHQPLPPTVMFPPQSVLSLSQSKVLPVPQKAVPY 195

Query: 164 PKNEMPWLLFVCF 126
           P+ +MP   F+ +
Sbjct: 196 PQRDMPIQAFLLY 208



to top

>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor|
          Length = 226

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
 Frame = -3

Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162
           Y + G W HH           P H  L  H+   V    +P  PQ   +PVP
Sbjct: 69  YESMGGWVHHQVIPVLSQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVP 120



to top

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
 Frame = -3

Query: 365 SSHHCACPSTSESHDGSQYQSRHCPLYANSG-----SWTHHDPHHQLLIFHYRSLVLTQS 201
           SS      S S S D    ++   P     G        HH  HHQ +        + Q 
Sbjct: 699 SSSESESSSESSSSDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQM--QQAPAPVPQQ 756

Query: 200 RPPPPQSHCLPVPKNE 153
            PPPPQ    P P  +
Sbjct: 757 PPPPPQQPPPPPPPQQ 772



to top

>SSRP_MYCLE (O32881) SsrA-binding protein|
          Length = 160

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 308 QSRHCPLYANSGSWTHHDP-HHQLLIFHYRSL 216
           ++ H P Y + GSWT+HDP  ++ L+ H R +
Sbjct: 64  RNMHIPEYQH-GSWTNHDPRRNRKLLLHRRQI 94



to top

>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 480

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -3

Query: 281 NSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMP 147
           NS    HH  HH     H+      Q  PPPPQ    P P  + P
Sbjct: 41  NSHHPQHHHHHHH---HHHPPPPAPQPPPPPPQQQQQPPPAPQPP 82



to top

>IRBP_BOVIN (P12661) Interphotoreceptor retinoid-binding protein precursor|
           (IRBP) (Interstitial retinol-binding protein) (7S
           protein)
          Length = 1286

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 248 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 126
           H+LL+FH    ++ +  PPPP    +P P+ E+ +L+   F
Sbjct: 695 HRLLVFHSPGEMVAEEAPPPPP--VVPSPE-ELSYLIEALF 732



to top

>DBP10_ASHGO (Q757U8) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 960

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +2

Query: 230 EKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 400
           E S+ G+   D++ N  L  EDSDDS ++S   ++ + +  +DE K  A Q+    K
Sbjct: 13  EHSDEGEDF-DIAGNIALDSEDSDDSVSDSDNEVQDIIEFSDDE-KQNAPQVSKTAK 67



to top

>ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation mediating|
           surface antigen)
          Length = 612

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 335 SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPP 186
           S +  G+ +      L++N     HH  H Q  + H+       S PPPP
Sbjct: 537 SSALGGTSFSQEQHSLHSNQ----HHHNHQQHPLIHHHQYQQQSSLPPPP 582



to top

>AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
 Frame = -3

Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162
           Y   G W HH           P H L   H+  +V  Q +P  PQ   +PVP
Sbjct: 69  YEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQ-QPVAPQQPMMPVP 119



to top

>AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
 Frame = -3

Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162
           Y   G W HH           P H L   H+  +V  Q +P  PQ   +PVP
Sbjct: 69  YEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQ-QPVAPQQPMMPVP 119



to top

>TSSC1_RAT (Q5PPK9) Protein TSSC1|
          Length = 386

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418
           +S   + H  D DD SD E H   +S K+   D + AT ++  +++   DW S
Sbjct: 305 ISSEPFGHLVDDDDVSDPEEHHTEKS-KEPLQDNVIATYEEHEDSVYAVDWAS 356



to top

>TSCC1_MOUSE (Q8K0G5) Protein TSSC1|
          Length = 386

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418
           +S   + H  D DD SD E H   +S K+   D + AT ++  +++   DW S
Sbjct: 305 ISSEPFGHLVDDDDVSDPEEHHAEKS-KEPLQDNVIATYEEHEDSVYAVDWAS 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,964,133
Number of Sequences: 219361
Number of extensions: 798926
Number of successful extensions: 3706
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3686
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top