Clone Name | bastl50f05 |
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Clone Library Name | barley_pub |
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 68.2 bits (165), Expect = 8e-12 Identities = 32/61 (52%), Positives = 40/61 (65%) Frame = +2 Query: 239 EAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418 E + D NRYL DD DT++ RV++ KDKR +EM T DQM+NAMKINDW+S Sbjct: 22 EVNEVQNDDVNNRYLQSGSEDDDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVS 81 Query: 419 L 421 L Sbjct: 82 L 82
>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 935 Score = 62.0 bits (149), Expect = 5e-10 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Frame = +2 Query: 224 DSEKSEAGDGGRDVS-KNRYLHREDSDDSDTES--HRVIRSLKDKRNDEMKATADQMRNA 394 D E S+ D + K++YL ++DDSD + RV++S KDKR DEM +T DQ++NA Sbjct: 23 DDEPSDTEPAPTDPNGKSKYLAGGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNA 82 Query: 395 MKINDWLSL 421 +KINDW+SL Sbjct: 83 IKINDWVSL 91
>IF38_SCHPO (O14164) Probable eukaryotic translation initiation factor 3 93 kDa| subunit (eIF3 p93) Length = 918 Score = 42.0 bits (97), Expect = 6e-04 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Frame = +2 Query: 230 EKSEAGDGGRDVSKNRYLHREDSDDS--DTESHRVIRSLKDKRNDEMKATADQMRNAMKI 403 EK EA G ++L E S++S + E RV++S KDKR +E + + ++NAM Sbjct: 142 EKEEAKPAGL-----KFLRGESSEESSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSS 196 Query: 404 NDWL 415 N+W+ Sbjct: 197 NNWI 200
>IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 913 Score = 38.1 bits (87), Expect = 0.009 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Frame = +2 Query: 224 DSEKSEAGDG------GRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 385 +SE S +G+ G + K L ED +D+ RV+RS KDKR +E+ + Sbjct: 12 ESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTK----RVVRSAKDKRFEELTNLIRTI 67 Query: 386 RNAMKIND 409 RNAMKI D Sbjct: 68 RNAMKIRD 75
>IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 93 kDa subunit| (eIF3 p93) (Nuclear transport protein NIP1) Length = 812 Score = 36.6 bits (83), Expect = 0.025 Identities = 17/65 (26%), Positives = 33/65 (50%) Frame = +2 Query: 227 SEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKIN 406 SE + G G K+ D + + + +V++S K+K DEM+ +++ A + Sbjct: 78 SEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLLDEMQDVYNKISQAENSD 137 Query: 407 DWLSL 421 DWL++ Sbjct: 138 DWLTI 142
>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3| subunit 8 (eIF3 p110) (eIF3c) Length = 898 Score = 32.7 bits (73), Expect = 0.36 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Frame = +2 Query: 224 DSEKSEAGDGGRDVSKNRYLHREDSDD----SDTESHRVIRSLKDKRNDEMKATADQMRN 391 DS+ S + D D N+ D D + + RV+R+ KDK+ DE+K Q R+ Sbjct: 12 DSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRD 71 Query: 392 AMKIND 409 A D Sbjct: 72 AKSNKD 77
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = -3 Query: 251 HHQLLIFHYRSLVL-----TQSRPPPPQSHCLPVPKN 156 HHQLL+ + + + S+ PPP HC+P+P + Sbjct: 319 HHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 31.2 bits (69), Expect = 1.0 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 11/81 (13%) Frame = -3 Query: 362 SHHCACPSTSESHDGSQYQSRHCP----------LYANSGSWTHHD-PHHQLLIFHYRSL 216 SH + PST+ + D Q H P SG W P +F L Sbjct: 8 SHRLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITTSGRWLQRQFPVLTTTVFFSLFL 67 Query: 215 VLTQSRPPPPQSHCLPVPKNE 153 P PPQ H P P + Sbjct: 68 SFPPHPPRPPQDHHRPTPARD 88
>GSBN_DROME (P09083) Protein gooseberry-neuro (Protein gooseberry proximal)| (BSH4) Length = 449 Score = 31.2 bits (69), Expect = 1.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 248 DGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 385 DG +D + N L DSD SDTES I + +R TA+Q+ Sbjct: 149 DGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQL 194
>ZN37A_HUMAN (P17032) Zinc finger protein 37A (Zinc finger protein KOX21)| Length = 561 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Frame = -3 Query: 269 WTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP-------KNEMPWLLFVCFPS 120 W H DP + L YR ++L +C+P P K E PW+L FPS Sbjct: 22 WQHLDPAQRTL---YRDVMLENYSHLVSVGYCIPKPEVILKLEKGEEPWILEEKFPS 75
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 10/52 (19%) Frame = -3 Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162 Y G W HH P H L H+ ++ Q +P PPQ +PVP Sbjct: 39 YEPMGGWLHHQIIPVLSQQHSPSHSLPPQHHIPIMAAQ-QPAPPQQPVMPVP 89
>TSSC1_MACFA (Q4R571) Protein TSSC1| Length = 387 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357
>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 1 protein) (Tumor-suppressing STF cDNA 1 protein) Length = 387 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357
>TSSC1_PONPY (Q5RE10) Protein TSSC1| Length = 414 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 332 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 384
>IWS1_MOUSE (Q8C1D8) IWS1-like protein| Length = 766 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/61 (27%), Positives = 24/61 (39%) Frame = +2 Query: 224 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKI 403 DSE E + S++ LHR DSD+E H D N+ + N + Sbjct: 68 DSENDEPSNANASDSESEELHRPKDSDSDSEEH-AESPASDSENEPVNQHGSDSENEELL 126 Query: 404 N 406 N Sbjct: 127 N 127
>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of| polyhomeotic 3) (Early development regulatory protein 3) Length = 983 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -3 Query: 365 SSHHCACPST-SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQS-RPP 192 S H P++ S S + + PL++ +HH Q + + L S + P Sbjct: 287 SIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQNSTQDP 346 Query: 191 PPQSHCLPVPKNEMP 147 PP HC+P+ + +P Sbjct: 347 PPSQHCIPLQNHGLP 361
>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)| Length = 129 Score = 29.3 bits (64), Expect = 3.9 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = -3 Query: 365 SSHHCACP-STSESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPP 189 SSH C S S+S SQ + H +++SG + PH L H + + PP Sbjct: 32 SSHCQTCSQSCSQSRSSSQSPTGH---HSSSGHQSQ-SPHPTLPPRHQKHTRHSHHCPPR 87 Query: 188 PQSHCLPVPKN 156 P +H PKN Sbjct: 88 PTTHSCSYPKN 98
>Y564_TREPA (O83575) Hypothetical protein TP0564| Length = 678 Score = 28.9 bits (63), Expect = 5.2 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 8/73 (10%) Frame = -3 Query: 362 SHHCACPSTSESHDGSQYQSRHCPL-------YANSGSWTHHDPHHQLLI-FHYRSLVLT 207 +H CP S H P+ + W H DP H L I H ++ + Sbjct: 125 AHRTVCPPWLLQAVYQHLTSHHVPIRYRDFDAILHRLGWLHEDPRHALYIKEHIPAVRME 184 Query: 206 QSRPPPPQSHCLP 168 S PP H LP Sbjct: 185 NSLYPPGALHTLP 197
>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) Length = 1247 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = -3 Query: 248 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 126 H+LL+FH ++ + PPPP + +P P+ E+ +L+ F Sbjct: 697 HRLLVFHSPGELVVEEAPPPPPA--VPSPE-ELTYLIEALF 734
>RRP3_ASPFU (Q4WJE9) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)| Length = 472 Score = 28.9 bits (63), Expect = 5.2 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = +2 Query: 257 RDVSKNRYLHR---EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 400 RDV K + H SD T SH+ + D + +ATA + R A K Sbjct: 2 RDVKKRKIAHEAPEHGSDTESTSSHKSVAQQDDPLETQDEATATESRPAPK 52
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Frame = -3 Query: 314 QYQSRHCPLYANSGSWTHHDPH-----HQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162 Q+Q P + +S H PH H +FH R+ + + PP P + L P Sbjct: 206 QHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPP 261
>CASB_BOVIN (P02666) Beta-casein precursor| Length = 224 Score = 28.9 bits (63), Expect = 5.2 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -3 Query: 335 SESHDGSQYQSRHCPLYANSGSWTH--HDPHHQLLIFHYRSLV-LTQSRPPPPQSHCLPV 165 S+S + ++ H PL SW H H P ++F +S++ L+QS+ P +P Sbjct: 137 SQSLTLTDVENLHLPLPLLQ-SWMHQPHQPLPPTVMFPPQSVLSLSQSKVLPVPQKAVPY 195 Query: 164 PKNEMPWLLFVCF 126 P+ +MP F+ + Sbjct: 196 PQRDMPIQAFLLY 208
>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor| Length = 226 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 10/52 (19%) Frame = -3 Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162 Y + G W HH P H L H+ V +P PQ +PVP Sbjct: 69 YESMGGWVHHQVIPVLSQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVP 120
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.5 bits (62), Expect = 6.7 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Frame = -3 Query: 365 SSHHCACPSTSESHDGSQYQSRHCPLYANSG-----SWTHHDPHHQLLIFHYRSLVLTQS 201 SS S S S D ++ P G HH HHQ + + Q Sbjct: 699 SSSESESSSESSSSDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQM--QQAPAPVPQQ 756 Query: 200 RPPPPQSHCLPVPKNE 153 PPPPQ P P + Sbjct: 757 PPPPPQQPPPPPPPQQ 772
>SSRP_MYCLE (O32881) SsrA-binding protein| Length = 160 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = -3 Query: 308 QSRHCPLYANSGSWTHHDP-HHQLLIFHYRSL 216 ++ H P Y + GSWT+HDP ++ L+ H R + Sbjct: 64 RNMHIPEYQH-GSWTNHDPRRNRKLLLHRRQI 94
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/45 (35%), Positives = 18/45 (40%) Frame = -3 Query: 281 NSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMP 147 NS HH HH H+ Q PPPPQ P P + P Sbjct: 41 NSHHPQHHHHHHH---HHHPPPPAPQPPPPPPQQQQQPPPAPQPP 82
>IRBP_BOVIN (P12661) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) (7S protein) Length = 1286 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -3 Query: 248 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 126 H+LL+FH ++ + PPPP +P P+ E+ +L+ F Sbjct: 695 HRLLVFHSPGEMVAEEAPPPPP--VVPSPE-ELSYLIEALF 732
>DBP10_ASHGO (Q757U8) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)| Length = 960 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 230 EKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 400 E S+ G+ D++ N L EDSDDS ++S ++ + + +DE K A Q+ K Sbjct: 13 EHSDEGEDF-DIAGNIALDSEDSDDSVSDSDNEVQDIIEFSDDE-KQNAPQVSKTAK 67
>ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation mediating| surface antigen) Length = 612 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/50 (28%), Positives = 21/50 (42%) Frame = -3 Query: 335 SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPP 186 S + G+ + L++N HH H Q + H+ S PPPP Sbjct: 537 SSALGGTSFSQEQHSLHSNQ----HHHNHQQHPLIHHHQYQQQSSLPPPP 582
>AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich amelogenin| peptide) (LRAP) Length = 210 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 10/52 (19%) Frame = -3 Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162 Y G W HH P H L H+ +V Q +P PQ +PVP Sbjct: 69 YEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQ-QPVAPQQPMMPVP 119
>AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-rich amelogenin| peptide) (LRAP) Length = 210 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 10/52 (19%) Frame = -3 Query: 287 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 162 Y G W HH P H L H+ +V Q +P PQ +PVP Sbjct: 69 YEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQ-QPVAPQQPMMPVP 119
>TSSC1_RAT (Q5PPK9) Protein TSSC1| Length = 386 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +2 Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418 +S + H D DD SD E H +S K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDVSDPEEHHTEKS-KEPLQDNVIATYEEHEDSVYAVDWAS 356
>TSCC1_MOUSE (Q8K0G5) Protein TSSC1| Length = 386 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +2 Query: 263 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 418 +S + H D DD SD E H +S K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDVSDPEEHHAEKS-KEPLQDNVIATYEEHEDSVYAVDWAS 356 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,964,133 Number of Sequences: 219361 Number of extensions: 798926 Number of successful extensions: 3706 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3686 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)