ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50f02 |
|---|---|
| Clone Library Name | barley_pub |
>HA1A_BOVIN (P13752) BOLA class I histocompatibility antigen, alpha chain BL3-6| precursor Length = 360 Score = 32.7 bits (73), Expect = 0.41 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Frame = +1 Query: 106 HDGSARKWEQRL---KPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNRPWR-TE 264 HDG + + L +P G G FQ+W V+P+ E T R HE ++E W + Sbjct: 240 HDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGDEQRYTCRVQHEGLQEPLTLRWEPPQ 299 Query: 265 PTYV 276 P+++ Sbjct: 300 PSFL 303
>HA11_RAT (P15978) Class I histocompatibility antigen, Non-RT1.A alpha-1| chain precursor Length = 319 Score = 32.7 bits (73), Expect = 0.41 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T R HE + E ++ Sbjct: 237 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPEPLSQ 296 Query: 250 PWRTEPT 270 W P+ Sbjct: 297 RWEPSPS 303
>HA19_CANFA (P18466) DLA class I histocompatibility antigen, A9/A9 alpha chain| precursor Length = 362 Score = 31.6 bits (70), Expect = 0.91 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +1 Query: 142 KPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNRPWRTEP 267 +P G G FQ+W V+P+ E T HE + E R W P Sbjct: 259 RPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPEPITRRWEPSP 303
>HA12_RAT (P16391) RT1 class I histocompatibility antigen, AA alpha chain| precursor Length = 371 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T R HE + + ++ Sbjct: 237 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPKPLSQ 296 Query: 250 PWRTEPT 270 W P+ Sbjct: 297 RWEPSPS 303
>HA1B_BOVIN (P13753) BOLA class I histocompatibility antigen, alpha chain BL3-7| precursor Length = 364 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = +1 Query: 142 KPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNRPWRTEPT 270 +P G G FQ+W V+P+ E T R HE ++E W T Sbjct: 261 RPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQT 306
>1C17_HUMAN (Q95604) HLA class I histocompatibility antigen, Cw-17 alpha chain| precursor (MHC class I antigen Cw*17) Length = 372 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Frame = +1 Query: 88 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +T DG + + L +P G G FQ+W V+P+ E T HE ++E Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLQEPCTL 296 Query: 250 PWR--TEPT 270 W+ ++PT Sbjct: 297 RWKPSSQPT 305
>HA18_MOUSE (P14430) H-2 class I histocompatibility antigen, Q8 alpha chain| precursor Length = 326 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T +HE + E Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293 Query: 250 PWRTEPTYVA 279 W P+ V+ Sbjct: 294 RWEPPPSTVS 303
>HA1L_MOUSE (P01897) H-2 class I histocompatibility antigen, L-D alpha chain| precursor Length = 362 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T R HE + E Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 296 Query: 250 PWRTEPT 270 W P+ Sbjct: 297 RWEPPPS 303
>HA11_MOUSE (P01899) H-2 class I histocompatibility antigen, D-B alpha chain| precursor (H-2D(B)) Length = 362 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T R HE + E Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 296 Query: 250 PWRTEPT 270 W P+ Sbjct: 297 RWEPPPS 303
>HA1Z_MOUSE (P01896) H-2 class I histocompatibility antigen, alpha chain (Clone| PH-2D-2) (Fragment) Length = 185 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T R HE + E Sbjct: 47 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 106 Query: 250 PWRTEPT 270 W P+ Sbjct: 107 RWEPPPS 113
>1C07_HUMAN (P10321) HLA class I histocompatibility antigen, Cw-7 alpha chain| precursor (MHC class I antigen Cw*7) Length = 366 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Frame = +1 Query: 88 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +T DG + + L +P G G FQ+W V+P+ E T HE ++E Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTL 296 Query: 250 PWR--TEPT 270 W ++PT Sbjct: 297 SWEPSSQPT 305
>HA10_MOUSE (P01898) H-2 class I histocompatibility antigen, Q10 alpha chain| precursor Length = 322 Score = 29.6 bits (65), Expect = 3.5 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T HE + E Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTL 293 Query: 250 PWRTEP---TYVAKYGDDLWLGVK 312 W P + ++ D LW +K Sbjct: 294 RWEPPPSTDSIMSHIADLLWPSLK 317
>HLAE_HUMAN (P13747) HLA class I histocompatibility antigen, alpha chain E| precursor (MHC class I antigen E) Length = 358 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT +G + E +P G G FQ+W V+P+ E T HE + E Sbjct: 234 ITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTL 293 Query: 250 PWR--TEPT 270 W+ ++PT Sbjct: 294 RWKPASQPT 302
>1B73_HUMAN (Q31612) HLA class I histocompatibility antigen, B-73 alpha chain| precursor (MHC class I antigen B*73) Length = 363 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Frame = +1 Query: 88 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +T DG + + L +P G G FQ+W V+P+ E T HE ++E Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLQEPCTL 296 Query: 250 PWR 258 W+ Sbjct: 297 RWK 299
>AMPL_MOUSE (Q9CPY7) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase) Length = 487 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +1 Query: 40 SDANNQSKERSAGALTLTAYLSHDGSARKW 129 +D NN K RSAGA T A+L + KW Sbjct: 416 ADVNNLGKYRSAGACTAAAFLREFVTHTKW 445
>HA15_MOUSE (P06339) H-2 class I histocompatibility antigen, D-37 alpha chain| precursor Length = 357 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T HE + E Sbjct: 233 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWAAVVVPLGKEQYYTCHVYHEGLPEPLTL 292 Query: 250 PWRTEPTYVA 279 W P+ V+ Sbjct: 293 RWEPPPSTVS 302
>HA1D_MOUSE (P01902) H-2 class I histocompatibility antigen, K-D alpha chain| precursor (H-2K(D)) Length = 368 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T H+ + E Sbjct: 234 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTL 293 Query: 250 PWRTEPTYVA 279 W+ P+ V+ Sbjct: 294 RWKLPPSTVS 303
>HLAE_PANTR (Q95IT3) HLA class I histocompatibility antigen, alpha chain E| precursor (MHC class I antigen E) Length = 350 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Frame = +1 Query: 88 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +T DG + L +P G G FQ+W V+P+ E T HE + E Sbjct: 234 ITLTWQQDGEGHTQDTELVDTRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTL 293 Query: 250 PWR--TEPT 270 W+ ++PT Sbjct: 294 RWKPASQPT 302
>AMPL_HUMAN (P28838) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase) (Peptidase S) Length = 487 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +1 Query: 40 SDANNQSKERSAGALTLTAYLSHDGSARKW 129 +D NN K RSAGA T A+L + KW Sbjct: 416 ADVNNIGKYRSAGACTAAAFLKEFVTHPKW 445
>AMPL_BOVIN (P00727) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase) Length = 487 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +1 Query: 40 SDANNQSKERSAGALTLTAYLSHDGSARKW 129 +D NN K RSAGA T A+L + KW Sbjct: 416 ADVNNIGKYRSAGACTAAAFLKEFVTHPKW 445
>HA14_MOUSE (P14427) H-2 class I histocompatibility antigen, D-P alpha chain| precursor (H-2D(P)) Length = 368 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Frame = +1 Query: 82 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPT*PE---TDRSSHEQVEESSNR 249 +TLT L+ + + E +P G G FQ+W V+P E T HE + E Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWAALVVPLGKEQNYTCHVEHEGLPEPLTL 293 Query: 250 PWRTEPT 270 W P+ Sbjct: 294 RWEPPPS 300
>HLAF_MACMU (P33617) HLA class I histocompatibility antigen, alpha chain F| precursor (HLA F antigen) (Leukocyte antigen F) Length = 348 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 13/68 (19%) Frame = +1 Query: 88 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPT*PETDRSSHEQVE-------- 234 +T DG + + L +P G G FQ+W V+P+ E + H Q E Sbjct: 236 ITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLTL 295 Query: 235 --ESSNRP 252 ESS++P Sbjct: 296 RWESSSQP 303
>RUVB_ZYMMO (Q5NR72) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 347 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 Query: 381 ARGRALNGLGWPPFRFTNPR 440 ARGR LNGL W T+PR Sbjct: 312 ARGRQLNGLAWRHLGLTDPR 331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,010,565 Number of Sequences: 219361 Number of extensions: 1537378 Number of successful extensions: 3774 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3705 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3769 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
