ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50e09 |
|---|---|
| Clone Library Name | barley_pub |
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from transposon 17.6| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1058 Score = 42.4 bits (98), Expect = 3e-04 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADGV 394 +EHLQ + ++F +L L L+ KC F +LGHV++ DG+ Sbjct: 376 DEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGI 420
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860 (ORF158)| Length = 158 Score = 42.0 bits (97), Expect = 3e-04 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +2 Query: 269 LQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLG--HVISADGVAMD 403 + H+ ++ H+ + R KC+FG +AYLG H+IS +GV+ D Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSAD 47
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III| Length = 2186 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADGV 394 E+HLQ V +R + L+ SKC V YLGH ++ DGV Sbjct: 1106 EQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGV 1150
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from transposon 297| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1059 Score = 38.9 bits (89), Expect = 0.003 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +2 Query: 263 EHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADGV 394 EHL + ++F +L L L+ KC F +LGH+++ DG+ Sbjct: 376 EHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGI 419
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 34.3 bits (77), Expect = 0.072 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +2 Query: 263 EHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADG 391 EH++HV + +L+ L + ++KC F + V ++G+ IS G Sbjct: 577 EHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 34.3 bits (77), Expect = 0.072 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +2 Query: 263 EHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADG 391 EH++HV + +L+ L + ++KC F + V ++G+ IS G Sbjct: 577 EHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 34.3 bits (77), Expect = 0.072 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +2 Query: 263 EHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADG 391 EH++HV + +L+ L + ++KC F + V ++G+ IS G Sbjct: 577 EHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from transposon 412| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1237 Score = 33.9 bits (76), Expect = 0.094 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2 Query: 257 AEEH-LQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADGVAMD 403 +E+H L+++ +F + R + L L KCSF V +LGH + G+ D Sbjct: 482 SEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPD 531
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from transposon gypsy| [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1035 Score = 32.7 bits (73), Expect = 0.21 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +2 Query: 263 EHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADGVAMDAD 409 +H++H+ + L + + + K F SV YLG ++S DG D + Sbjct: 352 DHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPE 400
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from transposon opus| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1003 Score = 32.3 bits (72), Expect = 0.27 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADGVAMD 403 + H +++ ++ L L + K F T V +LG++++ADG+ D Sbjct: 292 DTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKAD 339
>TXD11_MOUSE (Q8K2W3) Thioredoxin domain-containing protein 11| Length = 948 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +2 Query: 32 ESGGFGGSRPPSAVGEQRP-HISAMERVQLPG 124 E G GG++ P+ +G+ RP H +M QLPG Sbjct: 894 ELEGQGGAKEPAPLGKARPNHSKSMGTTQLPG 925
>RARA_NOTVI (P18514) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -1 Query: 207 DELNGRAPPISSLYHPXXXXXXXXXXSHPGSCTRSIAEMCGRCSPTA 67 D L G+ P SSL P PGSC+ S++ R SPT+ Sbjct: 421 DSLTGQPPRASSLAPP------------PGSCSPSLSPSSNRSSPTS 455
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 679 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLG 370 E+HL HVA+I + H + L + K + +LG Sbjct: 413 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 679 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLG 370 E+HL HVA+I + H + L + K + +LG Sbjct: 413 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 679 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLG 370 E+HL HVA+I + H + L + K + +LG Sbjct: 413 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 674 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLG 370 E+HL HVA+I + H + L + K + +LG Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 444
>SYR_BACTN (Q8A3X5) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 597 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/65 (24%), Positives = 27/65 (41%) Frame = +2 Query: 2 ICRCTAEWRGESGGFGGSRPPSAVGEQRPHISAMERVQLPGWLETESSERKERGWYREEI 181 IC+ W+ +G P + G++ H+ V + E +E E+G +EE Sbjct: 169 ICKSMLAWKK----YGNGETPESTGKKGDHLVGDYYVSFDKHYKAELAELMEKGMTKEEA 224 Query: 182 GGALP 196 A P Sbjct: 225 EAASP 229
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 680 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLG 370 E+HL HVA+I + H + L + K + +LG Sbjct: 414 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 450
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat protein; Protease| (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 1675 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +2 Query: 260 EEHLQHVAIIFNELRAHRLHLKRSKCSFGTTSVAYLGHVISADGVAM 400 +EH++H+ I FN ++ L + K V YLG I +++ Sbjct: 1351 KEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISL 1397
>GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)| Length = 1317 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Frame = +2 Query: 248 HWPAEEHLQHVAIIFNELRAH-------RLHLKRSKCSFGTTSVAYLGHVISADGVA 397 H PA LQ +FN + + +KRS+ S + A G ++ DGVA Sbjct: 269 HPPATHRLQRFIALFNSSKTSDGSGEHKKSRMKRSRTSLPASRFALPGTILQRDGVA 325
>CMTA1_ARATH (Q9FY74) Calmodulin-binding transcription activator 1| (Signal-responsive protein 2) (Ethylene-induced calmodulin-binding protein b) (EICBP.b) Length = 1007 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +2 Query: 245 CHWPAEEHLQHVAIIFNELRAHRLHLKRSKCSFG 346 C+W E+HL H+ + H L +K ++ S G Sbjct: 119 CYWMLEQHLMHIVFV------HYLQVKGNRTSIG 146
>POL2_BAMMN (P89684) Genome polyprotein 2 [Contains: Helper component| proteinase (EC 3.4.22.45) (HC-pro); 70 kDa protein] Length = 891 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 18 RSGGERAEALEEAVPRQPSVSSGHTSQLWSA 110 RSGG R+ AL A+P P VS+ ++ A Sbjct: 851 RSGGMRSRALHPAMPTMPGVSAATGRPIFQA 881
>LMNA_XENLA (P11048) Lamin-A| Length = 665 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +1 Query: 22 VEGRERRLWRKPSPVSRR*AAATHLSYGXXXXXXXXXXXXXXEEGE 159 +EG E RL PSP +++ +A T S+ EEGE Sbjct: 376 LEGEEERLRLSPSPNTQKRSARTIASHSGAHISSSASKRRRLEEGE 421
>HRPR_PSESY (P37930) Pathogenicity locus probable regulatory protein hrpR| Length = 314 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 111 TRSIAEMCGRCSPTADGGR 55 T+ IA CGR +PT D GR Sbjct: 196 TQDIAAECGRSAPTLDNGR 214
>DVL3_MOUSE (Q61062) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 35 SGGFGGSRPPSAVGEQRPHISAMERVQLPGWLETES--SERKER 160 +GG G SRPPS PH S + L ET+S S ++ER Sbjct: 106 TGGIGDSRPPSF----HPHASGGSQENLDNDTETDSLVSAQRER 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,404,653 Number of Sequences: 219361 Number of extensions: 778463 Number of successful extensions: 2646 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2645 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
