>Y2090_METMA (Q8PV84) UPF0251 protein MM2090|
          Length = 169

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 196 ALRTGFGVCVKKSSFTKAGLCRRLLLV--CNRWGNGKDDACYQARPTAKTNCQATVVARL 369
           AL  G  + +    +   G CR   L   C+     K D   Q+RPT+  NC + ++ RL
Sbjct: 79  ALVNGKAIEISGGEYVNTGECRIHFLCKECDHVWEAKFD---QSRPTSCPNCGSNLIFRL 135

Query: 370 WGDG 381
            GDG
Sbjct: 136 GGDG 139

>USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A protein) (Usher|
            syndrome type IIa protein)
          Length = 5202

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 166  EEVLNFYKRYALRTGFGVCVKKSSFTKAGL 255
            +E+LN Y+   L  GFG C+K   FT+  +
Sbjct: 1844 QELLNSYQHLCLEQGFGGCMKDVKFTRGAV 1873

>HMWP2_YEREN (P48633) High-molecular-weight protein 2 (HMWP2)|
          Length = 2035

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 259 RRLLLVCNRWGNGKDDAC-YQARPT-AKTNCQATVVARLWGDGLLHLTDVSLDHNHPLNP 432
           RR+++   RW    + A  Y   PT A   C + V+AR WG     L +++L    PL+P
Sbjct: 332 RRMIVPATRWHAFSNRAGEYGVTPTMALATCFSAVLAR-WGGLTRLLLNITLFDRQPLHP 390

Query: 433 SAARFL 450
           +    L
Sbjct: 391 AVGAML 396


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,351,693
Number of Sequences: 219361
Number of extensions: 623245
Number of successful extensions: 2340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2331
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)