ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470381.1| Oryza sativa (japonica cultivar-group), mRNA 420 e-114
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 420 e-114
3gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 420 e-114
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 420 e-114
5dbj|AK070364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114
6gb|CP000316.1| Polaromonas sp. JS666, complete genome 48 0.025
7emb|AL121832.56|HSJ908M14 Human DNA sequence from clone RP5-908M... 44 0.40
8gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.6
9ref|XM_469362.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
10gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 42 1.6
11gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.6
12gb|AY580273.1| Mytilus edulis methionine adenosyltransferase mRN... 42 1.6
13gb|AY580185.1| Chaetopterus sp. KJP-2000 methionine adenosyltran... 42 1.6
14ref|NM_007941.1| Mus musculus epimorphin (Epim), mRNA 42 1.6
15gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 42 1.6
16gb|CP000264.1| Jannaschia sp. CCS1, complete genome 42 1.6
17gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.6
18gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.6
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 42 1.6
21dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
23ref|NM_207848.1| Eremothecium gossypii AAL047Cp (AAL047C), mRNA 42 1.6
24gb|AF107093.1|AF107093 Rhodobacter sphaeroides cytidylate monoph... 42 1.6
25dbj|D10475.1|MUSEPIM Mus musculus mRNA for epimorphin, complete cds 42 1.6
26ref|NM_001006568.1| Gallus gallus DEAD (Asp-Glu-Ala-As) box poly... 40 6.2
27gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.2
28gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.2
29ref|NM_183265.1| Mus musculus RIKEN cDNA 1700011J10 gene (170001... 40 6.2
30ref|NM_003893.3| Homo sapiens LIM domain binding 1 (LDB1), mRNA 40 6.2
31gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.2
32ref|XM_417617.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 6.2
33gb|BC000482.2| Homo sapiens LIM domain binding 1, mRNA (cDNA clo... 40 6.2
34gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.2
35gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.2
36emb|AJ249705.1|RNO249705 Rattus norvegicus partial mRNA for MHC ... 40 6.2
37emb|AJ249701.1|RNO249701 Rattus norvegicus partial mRNA for MHC ... 40 6.2
38emb|AJ249699.1|RNO249699 Rattus norvegicus partial mRNA for MHC ... 40 6.2
39gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 6.2
40emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.2
41emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete ch... 40 6.2
42gb|AC124765.2| Mus musculus BAC clone RP23-197D9 from 2, complet... 40 6.2
43ref|NM_001018042.1| Mus musculus trans-acting transcription fact... 40 6.2
44emb|AL596261.6| Human DNA sequence from clone RP11-323A18 on chr... 40 6.2
45emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch... 40 6.2
46ref|XM_503268.1| Yarrowia lipolytica CLIB122, YALI0D25278g predi... 40 6.2
47gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.2
48emb|AL021918.1|HS34I8 Human DNA sequence from clone XXbac-34I8 o... 40 6.2
49emb|X82669.1|RNTR1AUAG R.norvegicus RT1.Au gene 40 6.2
50emb|Y14014.1|RNY14014 Rattus norvegicus mRNA for MHC class I alp... 40 6.2
51emb|Y13579.1|RNRT1A2F Rattus norvegicus mRNA for mature MHC clas... 40 6.2
52emb|Y08532.1|RNPEPPRES R.norvegicus mRNA for protein involved in... 40 6.2
53emb|X99767.1|RNA1FMHC R.norvegicus mRNA for MHC class I cell-sur... 40 6.2
54emb|X90373.1|RNRT1A10G R.norvegicus mRNA for RT1.A1(O) alpha chain 40 6.2
55emb|X90372.1|RNRT1A20G R.norvegicus mRNA for RT1.A2(O) alpha chain 40 6.2
56emb|X82106.1|RNRT1AU R.norvegicus mRNA for the RT1.A(u) alpha chain 40 6.2
57emb|X07528.1|RMRPSA Rhizobium melilotii 2011 rpsA gene for ribos... 40 6.2
58emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.2
59emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.2
60emb|AJ719483.1| Gallus gallus partial mRNA for hypothetical prot... 40 6.2
61emb|AJ719463.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.2
62ref|NM_204986.1| Gallus gallus phosphodiesterase 6C, cGMP-specif... 40 6.2
63dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.2
64emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, com... 40 6.2
65gb|AE006017.1| Caulobacter crescentus CB15 section 343 of 359 of... 40 6.2
66gb|AE011867.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.2
67gb|AE012326.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.2
68gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.2
69gb|AC025944.8| Homo sapiens chromosome 10 clone RP11-237L11, com... 40 6.2
70ref|NM_143517.1| Drosophila melanogaster CG11498-RA (CG11498), mRNA 40 6.2
71gb|AC026886.9| Homo sapiens chromosome 10 clone RP11-371O16, com... 40 6.2
72emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, co... 40 6.2
73gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.2
74dbj|AK013593.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 6.2
75gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.2
76dbj|AK005870.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.2
77gb|AF062567.1|AF062567 Mus musculus transcription factor Sp3 mRN... 40 6.2
78dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
79gb|BC079874.1| Mus musculus trans-acting transcription factor 3,... 40 6.2
80gb|AC009733.5|AC009733 Drosophila melanogaster, chromosome 3R, r... 40 6.2
81emb|BX936036.1| Gallus gallus finished cDNA, clone ChEST19f24 40 6.2
82emb|BX682533.6| Mouse DNA sequence from clone RP23-108L1 on chro... 40 6.2
83gb|AE004510.1| Pseudomonas aeruginosa PAO1, section 71 of 529 of... 40 6.2
84gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
85gb|AF025309.2|AF025309 Rattus norvegicus MHC class Ia protein (R... 40 6.2
86dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.2
87dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.2
88dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
89gb|AE005005.1| Halobacterium sp. NRC-1 section 36 of 170 of the ... 40 6.2
90gb|BC009246.2| Homo sapiens LIM domain binding 1, mRNA (cDNA clo... 40 6.2
91emb|AL732338.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.2
92emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.2
93gb|AE003772.2| Drosophila melanogaster chromosome 3R, section 11... 40 6.2
94gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.2
95gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.2
96gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.2
97emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chro... 40 6.2
98gb|U38972.1|RNU38972 Rattus norvegicus MHC class I RT1.Au heavy ... 40 6.2
99gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.2
100gb|L29233.1|CHKCCPA Gallus domesticus cone cGMP phosphodiesteras... 40 6.2
101gb|L40363.1|RATMHCIMRA Rattus norvegicus MHC class I RT1.Aw3 pro... 40 6.2
102emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete ... 40 6.2
103emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 6.2
104gb|M31018.1|RATMHCRT Rattus norvegicus MHC class I RT1.Aa alpha-... 40 6.2
105gb|L26224.1|RATCMHCI Rattus norvegicus MHC class I protein mRNA,... 40 6.2
106gb|M24023.1|RATMHRT6U Rat MHC class I RT1 (RT16) mRNA (u haploty... 40 6.2 
>ref|XM_470381.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2934

 Score =  420 bits (212), Expect = e-114
 Identities = 305/336 (90%)
 Strand = Plus / Plus

                                                                       
Query: 124 gacgaccggacgccgagggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 307

                                                                       
Query: 184 tacaagcgctacgccctgcgcaccggcttcggcgtctgcgtcaagaagtcctccttcacc 243
           ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 308 tacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcacc 367

                                                                       
Query: 244 aaggccggcctctgccgccgcctcctgctcgtctgcaacaggtgggggaacggcaaggac 303
           |||||||||||||||||||||||  ||||||||||||||| ||||||| |||| ||||| 
Sbjct: 368 aaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggag 427

                                                                       
Query: 304 gacgcctgctaccaggccaggcccacggccaagaccaactgccaggccaccgtcgtcgcc 363
           ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 428 gacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcg 487

                                                                       
Query: 364 aggctctggggggacggcctgctgcacctcaccgacgtcagcctcgaccacaaccacccg 423
           ||||||||| | || ||||||||||||||||  || ||||  || || ||||||||| ||
Sbjct: 488 aggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcg 547

                                               
Query: 424 ctcaacccctccgccgcgcgcttcctcaggtgctac 459
           || || |||||||| ||||| ||||| |||||||||
Sbjct: 548 ctgaatccctccgcggcgcggttcctgaggtgctac 583
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  420 bits (212), Expect = e-114
 Identities = 305/336 (90%)
 Strand = Plus / Plus

                                                                            
Query: 124      gacgaccggacgccgagggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 183
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35158537 gacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 35158596

                                                                            
Query: 184      tacaagcgctacgccctgcgcaccggcttcggcgtctgcgtcaagaagtcctccttcacc 243
                ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 35158597 tacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcacc 35158656

                                                                            
Query: 244      aaggccggcctctgccgccgcctcctgctcgtctgcaacaggtgggggaacggcaaggac 303
                |||||||||||||||||||||||  ||||||||||||||| ||||||| |||| ||||| 
Sbjct: 35158657 aaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggag 35158716

                                                                            
Query: 304      gacgcctgctaccaggccaggcccacggccaagaccaactgccaggccaccgtcgtcgcc 363
                ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 35158717 gacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcg 35158776

                                                                            
Query: 364      aggctctggggggacggcctgctgcacctcaccgacgtcagcctcgaccacaaccacccg 423
                ||||||||| | || ||||||||||||||||  || ||||  || || ||||||||| ||
Sbjct: 35158777 aggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcg 35158836

                                                    
Query: 424      ctcaacccctccgccgcgcgcttcctcaggtgctac 459
                || || |||||||| ||||| ||||| |||||||||
Sbjct: 35158837 ctgaatccctccgcggcgcggttcctgaggtgctac 35158872



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 392      tcaccgacgtcagcctcgaccacaaccac 420
                |||||||| || |||||||||||||||||
Sbjct: 27547841 tcaccgacctccgcctcgaccacaaccac 27547813
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
             sequence
          Length = 156606

 Score =  420 bits (212), Expect = e-114
 Identities = 305/336 (90%)
 Strand = Plus / Plus

                                                                         
Query: 124   gacgaccggacgccgagggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 183
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37298 gacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 37357

                                                                         
Query: 184   tacaagcgctacgccctgcgcaccggcttcggcgtctgcgtcaagaagtcctccttcacc 243
             ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 37358 tacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcacc 37417

                                                                         
Query: 244   aaggccggcctctgccgccgcctcctgctcgtctgcaacaggtgggggaacggcaaggac 303
             |||||||||||||||||||||||  ||||||||||||||| ||||||| |||| ||||| 
Sbjct: 37418 aaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggag 37477

                                                                         
Query: 304   gacgcctgctaccaggccaggcccacggccaagaccaactgccaggccaccgtcgtcgcc 363
             ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 37478 gacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcg 37537

                                                                         
Query: 364   aggctctggggggacggcctgctgcacctcaccgacgtcagcctcgaccacaaccacccg 423
             ||||||||| | || ||||||||||||||||  || ||||  || || ||||||||| ||
Sbjct: 37538 aggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcg 37597

                                                 
Query: 424   ctcaacccctccgccgcgcgcttcctcaggtgctac 459
             || || |||||||| ||||| ||||| |||||||||
Sbjct: 37598 ctgaatccctccgcggcgcggttcctgaggtgctac 37633
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  420 bits (212), Expect = e-114
 Identities = 305/336 (90%)
 Strand = Plus / Plus

                                                                            
Query: 124      gacgaccggacgccgagggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 183
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35248609 gacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 35248668

                                                                            
Query: 184      tacaagcgctacgccctgcgcaccggcttcggcgtctgcgtcaagaagtcctccttcacc 243
                ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 35248669 tacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcacc 35248728

                                                                            
Query: 244      aaggccggcctctgccgccgcctcctgctcgtctgcaacaggtgggggaacggcaaggac 303
                |||||||||||||||||||||||  ||||||||||||||| ||||||| |||| ||||| 
Sbjct: 35248729 aaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggag 35248788

                                                                            
Query: 304      gacgcctgctaccaggccaggcccacggccaagaccaactgccaggccaccgtcgtcgcc 363
                ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 35248789 gacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcg 35248848

                                                                            
Query: 364      aggctctggggggacggcctgctgcacctcaccgacgtcagcctcgaccacaaccacccg 423
                ||||||||| | || ||||||||||||||||  || ||||  || || ||||||||| ||
Sbjct: 35248849 aggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcg 35248908

                                                    
Query: 424      ctcaacccctccgccgcgcgcttcctcaggtgctac 459
                || || |||||||| ||||| ||||| |||||||||
Sbjct: 35248909 ctgaatccctccgcggcgcggttcctgaggtgctac 35248944



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 392      tcaccgacgtcagcctcgaccacaaccac 420
                |||||||| || |||||||||||||||||
Sbjct: 27639164 tcaccgacctccgcctcgaccacaaccac 27639136
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>dbj|AK070364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050I08, full
           insert sequence
          Length = 2935

 Score =  420 bits (212), Expect = e-114
 Identities = 305/336 (90%)
 Strand = Plus / Plus

                                                                       
Query: 124 gacgaccggacgccgagggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttc 308

                                                                       
Query: 184 tacaagcgctacgccctgcgcaccggcttcggcgtctgcgtcaagaagtcctccttcacc 243
           ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 309 tacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcacc 368

                                                                       
Query: 244 aaggccggcctctgccgccgcctcctgctcgtctgcaacaggtgggggaacggcaaggac 303
           |||||||||||||||||||||||  ||||||||||||||| ||||||| |||| ||||| 
Sbjct: 369 aaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggag 428

                                                                       
Query: 304 gacgcctgctaccaggccaggcccacggccaagaccaactgccaggccaccgtcgtcgcc 363
           ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 429 gacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcg 488

                                                                       
Query: 364 aggctctggggggacggcctgctgcacctcaccgacgtcagcctcgaccacaaccacccg 423
           ||||||||| | || ||||||||||||||||  || ||||  || || ||||||||| ||
Sbjct: 489 aggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcg 548

                                               
Query: 424 ctcaacccctccgccgcgcgcttcctcaggtgctac 459
           || || |||||||| ||||| ||||| |||||||||
Sbjct: 549 ctgaatccctccgcggcgcggttcctgaggtgctac 584
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 336     gaccaactgccaggccaccgtcgt 359
               ||||||||||||||||||||||||
Sbjct: 4107698 gaccaactgccaggccaccgtcgt 4107721



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 1849854 gacggcctgctgcacatcaccgac 1849831
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>emb|AL121832.56|HSJ908M14 Human DNA sequence from clone RP5-908M14 on chromosome 20 Contains the
             RPS21 gene for ribosomal protein S21, the C20orf150 gene
             for a novel protein similar to Mus musculus cables,, the
             C20orf151 gene for a novel protein weakly similar to
             retinoblastoma binding protein 8 (RBBP8), a novel gene and
             four CpG islands, complete sequence
          Length = 79951

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 347   aggccaccgtcgtcgccaggctctgggggg 376
             |||||||||  |||||||||||||||||||
Sbjct: 62004 aggccaccgctgtcgccaggctctgggggg 62033
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 375    ggacggcctgctgcacctcaccgac 399
              |||||||||||||||| ||||||||
Sbjct: 837895 ggacggcctgctgcacgtcaccgac 837919
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>ref|XM_469362.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1527

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 392 tcaccgacgtcagcctcgaccacaaccac 420
           |||||||| || |||||||||||||||||
Sbjct: 743 tcaccgacctccgcctcgaccacaaccac 771
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 375    ggacggcctgctgcacctcaccgac 399
              |||||||||||||||| ||||||||
Sbjct: 682735 ggacggcctgctgcacgtcaccgac 682711
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 375     ggacggcctgctgcacctcaccgac 399
               |||||||||||||||| ||||||||
Sbjct: 4600627 ggacggcctgctgcacatcaccgac 4600603
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>gb|AY580273.1| Mytilus edulis methionine adenosyltransferase mRNA, partial cds
          Length = 957

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 244 aaggccggcctctgccgccgc 264
           |||||||||||||||||||||
Sbjct: 823 aaggccggcctctgccgccgc 843
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>gb|AY580185.1| Chaetopterus sp. KJP-2000 methionine adenosyltransferase mRNA,
           partial cds
          Length = 957

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 244 aaggccggcctctgccgccgc 264
           |||||||||||||||||||||
Sbjct: 823 aaggccggcctctgccgccgc 843
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>ref|NM_007941.1| Mus musculus epimorphin (Epim), mRNA
          Length = 2931

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 ccccggcagcaagaggcggcg 90
          |||||||||||||||||||||
Sbjct: 63 ccccggcagcaagaggcggcg 83
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>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 392   tcaccgacgtcagcctcgaccacaaccac 420
             |||||||| || |||||||||||||||||
Sbjct: 14933 tcaccgacctccgcctcgaccacaaccac 14961
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 375    ggacggcctgctgcacctcaccgac 399
              |||||||||||||||| ||||||||
Sbjct: 691615 ggacggcctgctgcacgtcaccgac 691639
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 375    ggacggcctgctgcacctcaccgac 399
              |||||||||||||||| ||||||||
Sbjct: 359128 ggacggcctgctgcacgtcaccgac 359104
to top
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 251    gcctctgccgccgcctcctgctcgt 275
              ||||||||||||||||||| |||||
Sbjct: 260477 gcctctgccgccgcctcctcctcgt 260501
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 84      ggcggcggcgagcgtggagct 104
               |||||||||||||||||||||
Sbjct: 8469571 ggcggcggcgagcgtggagct 8469591
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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 392  tcaccgacgtcagcctcgaccacaaccac 420
            |||||||| || |||||||||||||||||
Sbjct: 2673 tcaccgacctccgcctcgaccacaaccac 2701
to top
>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0011N12
          Length = 158586

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     ggcggcggcgagcgtggagct 104
              |||||||||||||||||||||
Sbjct: 122421 ggcggcggcgagcgtggagct 122441
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>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1113_G05
          Length = 131445

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    ggcggcggcgagcgtggagct 104
             |||||||||||||||||||||
Sbjct: 18841 ggcggcggcgagcgtggagct 18861
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>ref|NM_207848.1| Eremothecium gossypii AAL047Cp (AAL047C), mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 251 gcctctgccgccgcctcctgctcgt 275
           ||||||||||||||||||| |||||
Sbjct: 428 gcctctgccgccgcctcctcctcgt 404
to top
>gb|AF107093.1|AF107093 Rhodobacter sphaeroides cytidylate monophosphate kinase (cmk),
            ribosomal protein S1 (rpsA1), integration host factor
            beta-subunit (hipB), N-(5'-phosphoribosyl)anthranilate
            isomerase (trpF), putative aromatic pathway regulator
            (aroR), and tryptophan synthase beta chain (trpB) genes,
            complete cds; and unknown gene
          Length = 6203

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 375  ggacggcctgctgcacctcaccgac 399
            |||||||||||||||| ||||||||
Sbjct: 1394 ggacggcctgctgcacgtcaccgac 1418
to top
>dbj|D10475.1|MUSEPIM Mus musculus mRNA for epimorphin, complete cds
          Length = 2931

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 ccccggcagcaagaggcggcg 90
          |||||||||||||||||||||
Sbjct: 63 ccccggcagcaagaggcggcg 83
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>ref|NM_001006568.1| Gallus gallus DEAD (Asp-Glu-Ala-As) box polypeptide 19B (DDX19B),
           mRNA
          Length = 3297

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 gccgccgcctcctgctcgtc 276
           ||||||||||||||||||||
Sbjct: 72  gccgccgcctcctgctcgtc 53
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 197     ccctgcgcaccggcttcggc 216
               ||||||||||||||||||||
Sbjct: 2280330 ccctgcgcaccggcttcggc 2280349
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 1096425 gacggcctgctgcacatcaccgac 1096448
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>ref|NM_183265.1| Mus musculus RIKEN cDNA 1700011J10 gene (1700011J10Rik), mRNA
          Length = 497

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  cctccgccgccgtccacgtc 51
           ||||||||||||||||||||
Sbjct: 141 cctccgccgccgtccacgtc 160
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>ref|NM_003893.3| Homo sapiens LIM domain binding 1 (LDB1), mRNA
          Length = 2292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  ggcagcaagaggcggcggcg 93
           ||||||||||||||||||||
Sbjct: 149 ggcagcaagaggcggcggcg 168
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 376    gacggcctgctgcacctcaccgac 399
              ||||||||||||||| ||||||||
Sbjct: 452287 gacggcctgctgcacatcaccgac 452264
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>ref|XM_417617.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 2410043F08
            (LOC419458), mRNA
          Length = 2212

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  cgacgcctgctaccaggcca 322
            ||||||||||||||||||||
Sbjct: 1440 cgacgcctgctaccaggcca 1459
to top
>gb|BC000482.2| Homo sapiens LIM domain binding 1, mRNA (cDNA clone MGC:8702
           IMAGE:2964724), complete cds
          Length = 2292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  ggcagcaagaggcggcggcg 93
           ||||||||||||||||||||
Sbjct: 149 ggcagcaagaggcggcggcg 168
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 2432850 gacggcctgctgcacatcaccgac 2432827
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 3298327 gacggcctgctgcacatcaccgac 3298304
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>emb|AJ249705.1|RNO249705 Rattus norvegicus partial mRNA for MHC class Ia A2b antigen
           (RT1-A2b gene)
          Length = 1038

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|AJ249701.1|RNO249701 Rattus norvegicus partial mRNA for MHC class Ia A2q antigen
           (RT1-A2q gene)
          Length = 1038

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|AJ249699.1|RNO249699 Rattus norvegicus partial mRNA for MHC class Ia A2h antigen
           (RT1-A2h gene)
          Length = 1038

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    gacggcctgctgcacctcaccgac 399
              ||||||||||||||| ||||||||
Sbjct: 799763 gacggcctgctgcacatcaccgac 799786
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 2817666 gacggcctgctgcacatcaccgac 2817643
to top
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12
          Length = 306650

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 376   gacggcctgctgcacctcaccgac 399
             ||||||||||||||| ||||||||
Sbjct: 29807 gacggcctgctgcacgtcaccgac 29830
to top
>gb|AC124765.2| Mus musculus BAC clone RP23-197D9 from 2, complete sequence
          Length = 191781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     cctccgccgccgtccacgtc 51
              ||||||||||||||||||||
Sbjct: 117114 cctccgccgccgtccacgtc 117095
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>ref|NM_001018042.1| Mus musculus trans-acting transcription factor 3 (Sp3), transcript
           variant 1, mRNA
          Length = 4192

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  cctccgccgccgtccacgtc 51
           ||||||||||||||||||||
Sbjct: 258 cctccgccgccgtccacgtc 239
to top
>emb|AL596261.6| Human DNA sequence from clone RP11-323A18 on chromosome 10 Contains
            part of the CTBP2 gene for C-terminal binding protein 2,
            complete sequence
          Length = 47407

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  aggccaggcccacggccaag 336
            ||||||||||||||||||||
Sbjct: 2202 aggccaggcccacggccaag 2221
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>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
             gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
             pseudogenes for  transcription elongation factor B (SIII),
             polypeptide 1, the LDB1 gene for LIM domain binding 1, a
             novel gene (KIAA0595), the NOLC1 gene for nucleolar and
             coiled-body phosphoprotein 1 and five CpG islands,
             complete sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ggcagcaagaggcggcggcg 93
             ||||||||||||||||||||
Sbjct: 56554 ggcagcaagaggcggcggcg 56535
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>ref|XM_503268.1| Yarrowia lipolytica CLIB122, YALI0D25278g predicted mRNA
          Length = 858

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 151 gtgttcaagtcgtacgaggaggtg 174
           ||||||||| ||||||||||||||
Sbjct: 184 gtgttcaagacgtacgaggaggtg 207
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    gacggcctgctgcacctcaccgac 399
              ||||||||||||||| ||||||||
Sbjct: 216718 gacggcctgctgcacgtcaccgac 216741
to top
>emb|AL021918.1|HS34I8 Human DNA sequence from clone XXbac-34I8 on chromosome 6p21.3-22.1
              Contains the 5' end of the ZNF184 gene for Kruppel-like
              zinc finger protein 184, a heterogeneous nuclear
              ribonucleoprotein A1 (HNRPA1) pseudogene, a CD83 antigen
              pseudogene, ESTs, STSs, GSSs and three CpG islands,
              complete sequence
          Length = 159506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    cgcctgctaccaggccaggc 325
              ||||||||||||||||||||
Sbjct: 112506 cgcctgctaccaggccaggc 112487
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>emb|X82669.1|RNTR1AUAG R.norvegicus RT1.Au gene
          Length = 3949

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   tccgccgccgtccacgtctt 53
            ||||||||||||||||||||
Sbjct: 1038 tccgccgccgtccacgtctt 1019
to top
>emb|Y14014.1|RNY14014 Rattus norvegicus mRNA for MHC class I alpha chain, partial
          Length = 1041

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|Y13579.1|RNRT1A2F Rattus norvegicus mRNA for mature MHC class I alpha chain
          Length = 1035

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|Y08532.1|RNPEPPRES R.norvegicus mRNA for protein involved in peptide presentation
          Length = 1047

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|X99767.1|RNA1FMHC R.norvegicus mRNA for MHC class I cell-surface antigen, A1(f) alpha
           chain
          Length = 1044

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|X90373.1|RNRT1A10G R.norvegicus mRNA for RT1.A1(O) alpha chain
          Length = 1038

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|X90372.1|RNRT1A20G R.norvegicus mRNA for RT1.A2(O) alpha chain
          Length = 1038

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|X82106.1|RNRT1AU R.norvegicus mRNA for the RT1.A(u) alpha chain
          Length = 1035

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 410 tccgccgccgtccacgtctt 391
to top
>emb|X07528.1|RMRPSA Rhizobium melilotii 2011 rpsA gene for ribosomal protein S1
          Length = 2485

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 376  gacggcctgctgcacctcaccgac 399
            ||||||||||||||| ||||||||
Sbjct: 1259 gacggcctgctgcacgtcaccgac 1282
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 376    gacggcctgctgcacctcaccgac 399
              ||||||||||||||| ||||||||
Sbjct: 533420 gacggcctgctgcacatcaccgac 533397
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 3029456 gacggcctgctgcacatcaccgac 3029433
to top
>emb|AJ719483.1| Gallus gallus partial mRNA for hypothetical protein, clone 2m5
          Length = 781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 gccgccgcctcctgctcgtc 276
           ||||||||||||||||||||
Sbjct: 120 gccgccgcctcctgctcgtc 101
to top
>emb|AJ719463.1| Gallus gallus mRNA for hypothetical protein, clone 2i24
          Length = 3297

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 gccgccgcctcctgctcgtc 276
           ||||||||||||||||||||
Sbjct: 72  gccgccgcctcctgctcgtc 53
to top
>ref|NM_204986.1| Gallus gallus phosphodiesterase 6C, cGMP-specific, cone, alpha
           prime (PDE6C), mRNA
          Length = 4329

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 10  tccccagtttgccaaggaat 29
           ||||||||||||||||||||
Sbjct: 234 tccccagtttgccaaggaat 253
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 2269095 gacggcctgctgcacatcaccgac 2269118
to top
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence
          Length = 197615

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tcggcgtctgcgtcaagaag 231
             ||||||||||||||||||||
Sbjct: 10882 tcggcgtctgcgtcaagaag 10901
to top
>gb|AE006017.1| Caulobacter crescentus CB15 section 343 of 359 of the complete genome
          Length = 10135

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gacggcctgctgcacctcaccgac 399
            ||||||||||||||| ||||||||
Sbjct: 5031 gacggcctgctgcacgtcaccgac 5008
to top
>gb|AE011867.1| Xanthomonas axonopodis pv. citri str. 306,  section 245 of 469 of the
            complete genome
          Length = 8580

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gacggcctgctgcacctcaccgac 399
            ||||||||||||||| ||||||||
Sbjct: 1115 gacggcctgctgcacatcaccgac 1092
to top
>gb|AE012326.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 234
            of 460 of the complete genome
          Length = 10551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gacggcctgctgcacctcaccgac 399
            ||||||||||||||| ||||||||
Sbjct: 8925 gacggcctgctgcacatcaccgac 8902
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 376    gacggcctgctgcacctcaccgac 399
              ||||||||||||||| ||||||||
Sbjct: 108785 gacggcctgctgcacgtcaccgac 108762
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>gb|AC025944.8| Homo sapiens chromosome 10 clone RP11-237L11, complete sequence
          Length = 173904

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   aggccaggcccacggccaag 336
             ||||||||||||||||||||
Sbjct: 86295 aggccaggcccacggccaag 86314
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>ref|NM_143517.1| Drosophila melanogaster CG11498-RA (CG11498), mRNA
          Length = 1903

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 accaactgccaggccaccgt 356
           ||||||||||||||||||||
Sbjct: 594 accaactgccaggccaccgt 575
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>gb|AC026886.9| Homo sapiens chromosome 10 clone RP11-371O16, complete sequence
          Length = 173898

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   aggccaggcccacggccaag 336
             ||||||||||||||||||||
Sbjct: 87604 aggccaggcccacggccaag 87585
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>emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, complete sequence
          Length = 207067

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 376    gacggcctgctgcacctcaccgac 399
              ||||||||||||||| ||||||||
Sbjct: 191578 gacggcctgctgcacgtcaccgac 191555
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 3302642 gacggcctgctgcacatcaccgac 3302619
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>dbj|AK013593.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:2900024O09
           product:unclassifiable, full insert sequence
          Length = 446

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  cctccgccgccgtccacgtc 51
           ||||||||||||||||||||
Sbjct: 100 cctccgccgccgtccacgtc 119
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 2323737 gacggcctgctgcacatcaccgac 2323760
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>dbj|AK005870.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700011J10 product:hypothetical protein,
           full insert sequence
          Length = 497

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  cctccgccgccgtccacgtc 51
           ||||||||||||||||||||
Sbjct: 141 cctccgccgccgtccacgtc 160
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>gb|AF062567.1|AF062567 Mus musculus transcription factor Sp3 mRNA, partial cds
          Length = 3616

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 32 cctccgccgccgtccacgtc 51
          ||||||||||||||||||||
Sbjct: 26 cctccgccgccgtccacgtc 7
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       ggagctggacgcggccgccg 118
                ||||||||||||||||||||
Sbjct: 11684156 ggagctggacgcggccgccg 11684175
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>gb|BC079874.1| Mus musculus trans-acting transcription factor 3, transcript
           variant 1, mRNA (cDNA clone MGC:105187 IMAGE:6833706),
           complete cds
          Length = 4192

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  cctccgccgccgtccacgtc 51
           ||||||||||||||||||||
Sbjct: 258 cctccgccgccgtccacgtc 239
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>gb|AC009733.5|AC009733 Drosophila melanogaster, chromosome 3R, region 99E-99E, BAC clone
              BACR05L15, complete sequence
          Length = 181056

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    accaactgccaggccaccgt 356
              ||||||||||||||||||||
Sbjct: 109813 accaactgccaggccaccgt 109832
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>emb|BX936036.1| Gallus gallus finished cDNA, clone ChEST19f24
          Length = 1799

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 gccgccgcctcctgctcgtc 276
           ||||||||||||||||||||
Sbjct: 89  gccgccgcctcctgctcgtc 70
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>emb|BX682533.6| Mouse DNA sequence from clone RP23-108L1 on chromosome 4, complete
             sequence
          Length = 160792

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    ccccagtttgccaaggaatt 30
             ||||||||||||||||||||
Sbjct: 11564 ccccagtttgccaaggaatt 11545
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>gb|AE004510.1| Pseudomonas aeruginosa PAO1, section 71 of 529 of the complete genome
          Length = 11351

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  accaggccaggcccacggcc 333
            ||||||||||||||||||||
Sbjct: 2199 accaggccaggcccacggcc 2218
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 1745979 gacggcctgctgcacgtcaccgac 1746002
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>gb|AF025309.2|AF025309 Rattus norvegicus MHC class Ia protein (RT1.Al) gene, complete cds
          Length = 4504

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   tccgccgccgtccacgtctt 53
            ||||||||||||||||||||
Sbjct: 1736 tccgccgccgtccacgtctt 1717
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    gacggcctgctgcacctcaccgac 399
              ||||||||||||||| ||||||||
Sbjct: 788810 gacggcctgctgcacgtcaccgac 788833
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     gctggacgcggccgccgaca 121
               ||||||||||||||||||||
Sbjct: 2679070 gctggacgcggccgccgaca 2679051
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ggagctggacgcggccgccg 118
             ||||||||||||||||||||
Sbjct: 32698 ggagctggacgcggccgccg 32717
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>gb|AE005005.1| Halobacterium sp. NRC-1 section 36 of 170 of the complete genome
          Length = 10570

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 89   cggcgagcgtggagctggacgcggccgccgac 120
            ||||| ||||||||| ||||||||||||||||
Sbjct: 8145 cggcgtgcgtggagc-ggacgcggccgccgac 8115
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>gb|BC009246.2| Homo sapiens LIM domain binding 1, mRNA (cDNA clone MGC:3787
           IMAGE:2964724), complete cds
          Length = 2292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  ggcagcaagaggcggcggcg 93
           ||||||||||||||||||||
Sbjct: 149 ggcagcaagaggcggcggcg 168
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>emb|AL732338.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0315F07, complete
             sequence
          Length = 73187

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ggcctctgccgccgcctcct 269
             ||||||||||||||||||||
Sbjct: 55440 ggcctctgccgccgcctcct 55421
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>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete
             sequence
          Length = 63554

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ggcctctgccgccgcctcct 269
             ||||||||||||||||||||
Sbjct: 10164 ggcctctgccgccgcctcct 10145
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>gb|AE003772.2| Drosophila melanogaster chromosome 3R, section 110 of 118 of the complete
              sequence
          Length = 228443

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    accaactgccaggccaccgt 356
              ||||||||||||||||||||
Sbjct: 179354 accaactgccaggccaccgt 179373
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 2291441 gacggcctgctgcacatcaccgac 2291464
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 1980024 gacggcctgctgcacatcaccgac 1980047
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     gacggcctgctgcacctcaccgac 399
               ||||||||||||||| ||||||||
Sbjct: 1847688 gacggcctgctgcacatcaccgac 1847711
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>emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chromosome 2, complete
              sequence
          Length = 219568

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     cctccgccgccgtccacgtc 51
              ||||||||||||||||||||
Sbjct: 185897 cctccgccgccgtccacgtc 185916
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>gb|U38972.1|RNU38972 Rattus norvegicus MHC class I RT1.Au heavy chain precursor, mRNA,
           complete cds
          Length = 1576

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 473 tccgccgccgtccacgtctt 454
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 377     acggcctgctgcacctcaccgacg 400
               ||||||||||||||||| ||||||
Sbjct: 1372133 acggcctgctgcacctcgccgacg 1372110
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>gb|L29233.1|CHKCCPA Gallus domesticus cone cGMP phosphodiesterase a'-subunit mRNA,
           complete cds
          Length = 4329

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 10  tccccagtttgccaaggaat 29
           ||||||||||||||||||||
Sbjct: 234 tccccagtttgccaaggaat 253
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>gb|L40363.1|RATMHCIMRA Rattus norvegicus MHC class I RT1.Aw3 protein mRNA, complete cds,
           haplotype l
          Length = 1619

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 470 tccgccgccgtccacgtctt 451
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>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 377    acggcctgctgcacctcaccgacg 400
              |||||| |||||||||||||||||
Sbjct: 301565 acggcccgctgcacctcaccgacg 301542
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 151     gtgttcaagtcgtacgaggaggtg 174
               ||||||||| ||||||||||||||
Sbjct: 3373362 gtgttcaagacgtacgaggaggtg 3373385
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>gb|M31018.1|RATMHCRT Rattus norvegicus MHC class I RT1.Aa alpha-chain precursor mRNA,
           complete cds
          Length = 1590

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 491 tccgccgccgtccacgtctt 472
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>gb|L26224.1|RATCMHCI Rattus norvegicus MHC class I protein mRNA, 3'end of cds
          Length = 1576

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 491 tccgccgccgtccacgtctt 472
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>gb|M24023.1|RATMHRT6U Rat MHC class I RT1 (RT16) mRNA (u haplotype), 3' end
          Length = 1336

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tccgccgccgtccacgtctt 53
           ||||||||||||||||||||
Sbjct: 260 tccgccgccgtccacgtctt 241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,251,805
Number of Sequences: 3902068
Number of extensions: 3251805
Number of successful extensions: 73732
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70703
Number of HSP's gapped (non-prelim): 3030
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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