ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 30 3.2
2SPDYB_MOUSE (Q5IBH6) Speedy protein B (Rapid inducer of G2/M pro... 29 5.4

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -1

Query: 353 TVRLLKSSAVDDDSGGPD----EPELDGWLTVLSS 261
           T +L+ S+AVD D+GG      E EL+ W+T L S
Sbjct: 53  TCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPS 87



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>SPDYB_MOUSE (Q5IBH6) Speedy protein B (Rapid inducer of G2/M progression in|
           oocytes B) (RINGO B) (mSpy/Ringo B)
          Length = 268

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 407 MTLGSTSACSRIETAAPGTVRLLKSSAVDDDSGGPDEPELD 285
           +T G  S CS  ++  PG  R      VD +S G  EP ++
Sbjct: 36  VTAGQLSLCSEEQSPQPGITRPSPGVVVDGESSGLAEPRVE 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,341,695
Number of Sequences: 219361
Number of extensions: 376737
Number of successful extensions: 1215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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