ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RM03_MOUSE (Q99N95) Mitochondrial 39S ribosomal protein L3 (L3mt... 30 3.5

>RM03_MOUSE (Q99N95) Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3)|
          Length = 348

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 289 ASDAASVFRCSARSPGADPGGERRRGWDALFHDAFQGAVRRWSEYV 426
           A   A V  C AR  GADPG ERR+       +    +   W E++
Sbjct: 8   AQAGARVLGCGARGLGADPGLERRKNILFFVRNLHSKSSTWWDEHL 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.130    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,692,256
Number of Sequences: 219361
Number of extensions: 388099
Number of successful extensions: 1781
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top