ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC084515.1|CBRG17N15 Caenorhabditis briggsae cosmid G17N15, c... 44 0.41
2gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome... 42 1.6
3gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.6
4ref|XM_517624.1| PREDICTED: Pan troglodytes similar to adenylate... 40 6.4
5gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete... 40 6.4
6emb|CR749634.1| Homo sapiens mRNA; cDNA DKFZp686J099 (from clone... 40 6.4
7gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, compl... 40 6.4
8gb|AC117838.1| Caenorhabditis briggsae cosmid CB005E21, complete... 40 6.4
9gb|AC018600.6| Homo sapiens, clone RP11-26L8, complete sequence 40 6.4
10gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 1... 40 6.4
11gb|AC127520.5| Homo sapiens chromosome 15, clone RP11-825M14, co... 40 6.4
12gb|M31129.1|DROGPAD Drosophila melanogaster G protein alpha subu... 40 6.4
13gb|AC160649.2| Pan troglodytes BAC clone CH251-568N12 from chrom... 40 6.4
14gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, r... 40 6.4
15gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, r... 40 6.4
16gb|AC007099.3| Homo sapiens BAC clone RP11-445A14 from 2, comple... 40 6.4
17gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2... 40 6.4
18emb|CT009703.8| Zebrafish DNA sequence from clone DKEYP-32B7 in ... 40 6.4
19gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21... 40 6.4
20gb|AF082183.1|AF082183 Streptococcus mutans ABC transporter MutF... 40 6.4
21emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-7... 40 6.4
22gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 ... 40 6.4
23gb|AC002468.1|AC002468 Human Chromosome 15q26.1 PAC clone pDJ417... 40 6.4

>gb|AC084515.1|CBRG17N15 Caenorhabditis briggsae cosmid G17N15, complete sequence
          Length = 40280

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 15    ttctgaaagaaaaaagaagcaa 36
             ||||||||||||||||||||||
Sbjct: 19309 ttctgaaagaaaaaagaagcaa 19288



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>gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome 13, complete sequence
          Length = 181174

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    gaaagaaaaaagaagcaaccg 39
             |||||||||||||||||||||
Sbjct: 99388 gaaagaaaaaagaagcaaccg 99368



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 272     ttcggcggaggtggacgtcga 292
               |||||||||||||||||||||
Sbjct: 1708598 ttcggcggaggtggacgtcga 1708618



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>ref|XM_517624.1| PREDICTED: Pan troglodytes similar to adenylate cyclase 2; ATP
            pyrophosphate-lyase; type II adenylate cyclase;
            3,5-cyclic AMP synthetase; adenylyl cyclase 2; adenylate
            cyclase II (LOC461715), mRNA
          Length = 3597

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   atccagatgctgccgctgct 104
            ||||||||||||||||||||
Sbjct: 2001 atccagatgctgccgctgct 1982



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>gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete sequence
          Length = 179325

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tgctgccgctgctactaact 111
             ||||||||||||||||||||
Sbjct: 16768 tgctgccgctgctactaact 16787



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>emb|CR749634.1| Homo sapiens mRNA; cDNA DKFZp686J099 (from clone DKFZp686J099)
          Length = 9825

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   atccagatgctgccgctgct 104
            ||||||||||||||||||||
Sbjct: 8451 atccagatgctgccgctgct 8432



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>gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, complete sequence
          Length = 105027

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    atccagatgctgccgctgct 104
             ||||||||||||||||||||
Sbjct: 56796 atccagatgctgccgctgct 56777



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>gb|AC117838.1| Caenorhabditis briggsae cosmid CB005E21, complete sequence
          Length = 109299

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    ccttctgaaagaaaaaagaa 32
             ||||||||||||||||||||
Sbjct: 46158 ccttctgaaagaaaaaagaa 46139



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>gb|AC018600.6| Homo sapiens, clone RP11-26L8, complete sequence
          Length = 159469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     tctccttctgaaagaaaaaa 29
              ||||||||||||||||||||
Sbjct: 106693 tctccttctgaaagaaaaaa 106674



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>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete sequence
          Length = 200690

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      cttctccttctgaaagaaaa 27
              ||||||||||||||||||||
Sbjct: 117802 cttctccttctgaaagaaaa 117783



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>gb|AC127520.5| Homo sapiens chromosome 15, clone RP11-825M14, complete sequence
          Length = 155382

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 5     actcttctccttctgaaagaaaaaagaa 32
             ||||||||| |||| |||||||||||||
Sbjct: 88922 actcttctcattctcaaagaaaaaagaa 88949



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>gb|M31129.1|DROGPAD Drosophila melanogaster G protein alpha subunit gene, partial cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tgctgccgctgctactaact 111
           ||||||||||||||||||||
Sbjct: 192 tgctgccgctgctactaact 211



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>gb|AC160649.2| Pan troglodytes BAC clone CH251-568N12 from chromosome unknown,
             complete sequence
          Length = 192241

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     ttctccttctgaaagaaaaaagaa 32
             |||| |||||||||||||||||||
Sbjct: 73560 ttcttcttctgaaagaaaaaagaa 73537



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>gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, region 82C-82D, BAC clone
             BACR02C19, complete sequence
          Length = 188359

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    caaaagcgaaaccaaaacag 67
             ||||||||||||||||||||
Sbjct: 66225 caaaagcgaaaccaaaacag 66244



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>gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone
              BACR20O22, complete sequence
          Length = 168567

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     tgctgccgctgctactaact 111
              ||||||||||||||||||||
Sbjct: 117508 tgctgccgctgctactaact 117527



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>gb|AC007099.3| Homo sapiens BAC clone RP11-445A14 from 2, complete sequence
          Length = 125032

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tctgaaagaaaaaagaagca 35
             ||||||||||||||||||||
Sbjct: 64824 tctgaaagaaaaaagaagca 64805



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>gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2018B2, complete sequence
          Length = 109626

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    atccagatgctgccgctgct 104
             ||||||||||||||||||||
Sbjct: 12699 atccagatgctgccgctgct 12680



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>emb|CT009703.8| Zebrafish DNA sequence from clone DKEYP-32B7 in linkage group 12,
             complete sequence
          Length = 129251

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   ccagaaaatatcatttctag 149
             ||||||||||||||||||||
Sbjct: 76235 ccagaaaatatcatttctag 76254



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>gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21 of 73 of the complete
             sequence
          Length = 281782

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tgctgccgctgctactaact 111
             ||||||||||||||||||||
Sbjct: 96412 tgctgccgctgctactaact 96431



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>gb|AF082183.1|AF082183 Streptococcus mutans ABC transporter MutF (mutF), membrane spanning
            protein MutE (mutE), and membrane protein MutG (mutG)
            genes, complete cds; and fructose bi-phosphate aldolase
            (fba) gene, partial cds
          Length = 3398

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 132  agaaaatatcatttctagcg 151
            ||||||||||||||||||||
Sbjct: 2378 agaaaatatcatttctagcg 2397



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>emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174273

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     ttctccttctgaaagaaaaaagaa 32
             |||| |||||||||||||||||||
Sbjct: 45419 ttcttcttctgaaagaaaaaagaa 45442



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>gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 of 118 of the complete
              sequence
          Length = 273418

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     caaaagcgaaaccaaaacag 67
              ||||||||||||||||||||
Sbjct: 153126 caaaagcgaaaccaaaacag 153145



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>gb|AC002468.1|AC002468 Human Chromosome 15q26.1 PAC clone pDJ417d7, complete sequence
          Length = 115888

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 5     actcttctccttctgaaagaaaaaagaa 32
             ||||||||| |||| |||||||||||||
Sbjct: 76600 actcttctcattctcaaagaaaaaagaa 76627


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,165,805
Number of Sequences: 3902068
Number of extensions: 4165805
Number of successful extensions: 94794
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94714
Number of HSP's gapped (non-prelim): 80
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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