>HLXB9_MOUSE (Q9QZW9) Homeobox protein HB9|
          Length = 404

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 24/59 (40%), Positives = 28/59 (47%)
 Frame = -1

Query: 347 PGDHSRSTEERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSSP 171
           PGD  R+    P RL AA  + L K G + AG  GGGA        A G G P  H+ P
Sbjct: 70  PGDRLRAESPSPPRLLAAHCALLPKPGFLGAGG-GGGA--------AGGPGTPHHHAHP 119

>HLXB9_HUMAN (P50219) Homeobox protein HB9|
          Length = 403

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -1

Query: 347 PGDHSRSTEERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSSP 171
           P D  R+    P RL AA  + L K G + AG  GGG           G G P  H+ P
Sbjct: 69  PADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGT--------GGGHGGPHHHAHP 119

>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)|
          Length = 2158

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 23/85 (27%), Positives = 42/85 (49%)
 Frame = -1

Query: 335  SRSTEERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSSPPETKW 156
            +R+  E   +  AA   ++ ++G   A +  GG L  E       D +P +HSSP +   
Sbjct: 1065 ARAGAEEGGQGQAAGGQQVAEQGPEPAED--GGHLASEPEV-QPSDRSPLEHSSPEKEAP 1121

Query: 155  NPRSLAPPHQSLSSQSHLIWQTERE 81
            +P    PP ++++++SH    + RE
Sbjct: 1122 SPEKTLPPQKTVAAESHEKVPSSRE 1146

>CDON_RAT (O35158) Cell adhesion molecule-related/down-regulated by oncogenes|
           precursor
          Length = 1256

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 152 PRSLAPPHQSLSSQSHLIWQTEREGGMEI 66
           P  L+PP   +     L+W+T R+GGM I
Sbjct: 577 PNILSPPQTHMPDTYTLVWRTGRDGGMPI 605

>TGDS_HUMAN (O95455) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)|
          Length = 350

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 258 THPPLLLQPASCCSTESYWPLFRGPGVITRLLSAYPLHR 374
           T+P    + A+ C  +SYW  ++ P VITR  + Y  H+
Sbjct: 163 TNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQ 201

>IKBE_MOUSE (O54910) NF-kappa-B inhibitor epsilon (NF-kappa-BIE)|
           (I-kappa-B-epsilon) (IkappaBepsilon) (IKB-epsilon)
           (IKB-E)
          Length = 364

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 175 ALRRRNGTLGRSLLRTSPSPANLISSGRPSEREGWRSLASCCYLAASPRNQ 23
           A RR+N      LL   P P   +S     + + W+ LA C ++A   RNQ
Sbjct: 198 ACRRQNLACACCLLEEQPEPGRQLSHPLDLQLKNWQGLA-CLHIATLQRNQ 247

>TGDS_MOUSE (Q8VDR7) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)|
          Length = 355

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 258 THPPLLLQPASCCSTESYWPLFRGPGVITRLLSAYPLHR 374
           T+P    + A+ C  +SYW  ++ P VITR  + Y  H+
Sbjct: 163 TNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQ 201

>CDON_MOUSE (Q32MD9) Cell adhesion molecule-related/down-regulated by oncogenes|
           precursor
          Length = 1250

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 152 PRSLAPPHQSLSSQSHLIWQTEREGGMEI 66
           P  L+PP   +    +L+W+  R+GGM I
Sbjct: 576 PNILSPPQTHMPDTYNLVWRAGRDGGMPI 604

>APT1_YEAST (P49435) Adenine phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT 1)|
          Length = 187

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 303 ESYWPLFRGPGVITRLLSAYPLH 371
           E + P+FR PG+  +L+ A+ LH
Sbjct: 28  EDFLPIFRNPGLFQKLIDAFKLH 50

>PBPA_ECOLI (P02918) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 850

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +3

Query: 297 STESYWPLFRGPGVITRLLSAYPLHRK------MSVAKKDEVCGHPLGLRLGEPA 443
           S++  W    GPGV+T +   +  HR+       S A KD++ G+  G +  +PA
Sbjct: 722 SSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPA 776

>5HT6R_PANTR (Q5IS65) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6)
          Length = 440

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 129 PVPLQPISSHLADRARGRDGDPLLVAATLLPLRATKTQPTP 7
           P+PL P S   +D   G      L A  LLP  AT+  P P
Sbjct: 371 PLPLPPDSDSDSDAGSGGSSGLRLTAQLLLPGEATRDPPLP 411

>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 23  LVARRGSKVAATSKGSPSLPLARSAR*DEIGWRGTGAEERATEG 154
           L   +G+K  A   G P  P AR  +    GW+G   E R TEG
Sbjct: 449 LFGLKGAKGRAGFPGLPGSPGARGPK----GWKGDAGECRCTEG 488

>SYH_AZOSE (Q5P7B4) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 438

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 320 ERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAP 189
           E+  RL+  AA  L   G      CGGG+ K  ++  AD  GAP
Sbjct: 343 EQAQRLAFRAAEALRSHGFAVLMHCGGGSFK-SQMKKADASGAP 385

>VS48_TBRVL (P22050) Satellite RNA 48 kDa protein|
          Length = 424

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 242 GGALKRERVA*ADGD-GAPTQHSSPPETKWNPRSLAPPHQSLSSQ 111
           GG  KR+    ADG  G P+ +   P  KW  +++A P Q   S+
Sbjct: 54  GGGRKRK----ADGSQGRPSNNPGRPSRKWTEKTIAAPPQGFFSR 94

>5HT6R_HUMAN (P50406) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6)
          Length = 440

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 129 PVPLQPISSHLADRARGRDGDPLLVAATLLPLRATKTQPTP 7
           P+PL P S   +D   G      L A  LLP  AT+  P P
Sbjct: 371 PLPLPPDSDSDSDAGSGGSSGLRLTAQLLLPGEATQDPPLP 411

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +3

Query: 237  PAAALACTHPPLLLQPASCCSTESYWPLFRG---PGVITRLLSAYPLHRKMSVAKKDEVC 407
            PA  +     P  L  +S C   +   + +G   P ++TR+ S    +++  +  +    
Sbjct: 3997 PARGVPQQQHPQQLSHSSPCKPNTLVSVNQGVQPPAILTRVGSHSQPNQQQQLPHQQSSS 4056

Query: 408  GHPLGLRLGEPAAGVPIR 461
            GHP   +L  P A +P++
Sbjct: 4057 GHPHQKQLSSPGANLPLQ 4074

>DPOD3_MOUSE (Q9EQ28) DNA polymerase delta subunit 3 (DNA polymerase delta|
           subunit p66)
          Length = 462

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -1

Query: 323 EERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSS---PPETKWN 153
           E R V  +++A  +   KG V +   G  A+ + +V   D + A  +  +   PP +   
Sbjct: 212 EAREVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVN-LDSEQAVKEEKTVEQPPVSVTE 270

Query: 152 PRSLAPPHQSLSSQ 111
           P+  APP Q  SS+
Sbjct: 271 PKLAAPPAQKKSSR 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,906,639
Number of Sequences: 219361
Number of extensions: 1698673
Number of successful extensions: 6515
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6510
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)