ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50d09 |
|---|---|
| Clone Library Name | barley_pub |
>RIN1_HUMAN (Q13671) Ras and Rab interactor 1 (Ras interaction/interference| protein 1) (Ras inhibitor JC99) Length = 783 Score = 31.2 bits (69), Expect = 0.62 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Frame = -3 Query: 359 PSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRAV 180 P P+ + G P+SS EG+P S PA +P L RRR P++R + Sbjct: 307 PMPSLQEVDCGSPSSSEE---------EGVPGSRGSPATSPHLGRRR-----PLLRSMSA 352 Query: 179 RGCW----KRPLTRAETAPCRDR 123 C +R + RA A +DR Sbjct: 353 AFCSLLAPERQVGRAAAALMQDR 375
>MBB1A_HUMAN (Q9BQG0) Myb-binding protein 1A| Length = 1328 Score = 30.8 bits (68), Expect = 0.81 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 169 QQPRTARRRTTGHLPSKRRRTSRGAAAGQAPEEGNPSA 282 Q P + +R+ G LP ++R R + G E+G P+A Sbjct: 1162 QSPISKKRKKKGFLPETKKRKKRKSEDGTPAEDGTPAA 1199
>BCSC_XANAC (P58938) Cellulose synthase operon protein C precursor| Length = 1508 Score = 29.6 bits (65), Expect = 1.8 Identities = 29/101 (28%), Positives = 40/101 (39%) Frame = +1 Query: 76 RQLEVRRFSSDRVGELRSLHGAVSALVSGRFQQPRTARRRTTGHLPSKRRRTSRGAAAGQ 255 +QLE S + LR GA + +G R ARR + + R+ A AG+ Sbjct: 90 QQLEGAHPQSPQAQRLRVAIGARGSSSAGEDSNLRNARRAASAGRYVEAARSYEAAFAGK 149 Query: 256 APEEGNPSAXXXXXXXXXXELAGNPAEGFSVAGDGARRLRT 378 P LAG P G+ A DG RRL++ Sbjct: 150 PPPPN-------LALEYYQSLAGTPT-GWERARDGLRRLQS 182
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 172 QPRTARRRTTGHLPSKRRRTSRGAAAGQAPEEG 270 +P RRR T PS++++ RG A +A EG Sbjct: 171 RPTYRRRRPTAATPSRKKKARRGPKASKAGREG 203
>K6PF1_CANAL (O94201) 6-phosphofructokinase alpha subunit (EC 2.7.1.11)| (Phosphofructokinase 1) (Phosphohexokinase) (6PF-1-K alpha subunit) (CaPFK1) Length = 987 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +1 Query: 100 SSDRVGELRSLHGAVSALVSGRFQQPRTARRRTTGHLPSKRRRTSRGAAAGQAPEEGNPS 279 + D + + S + L RFQ P +TT + +KR+++ G+ G EE +PS Sbjct: 159 AEDPLNNIISFSNTQNELCKTRFQSPEEYVEKTTAEILAKRKKSQLGSKFGSF-EEISPS 217
>Y4DX_RHISN (P55423) Hypothetical 20.6 kDa protein y4dX| Length = 192 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 212 GRCPVVRRRAVRGCWKRPLTRAETAPCRDRSSPT 111 GR V RR +RG K+P+ R AP SS T Sbjct: 8 GRGAVGRREMLRGSGKKPIQRLAKAPAATASSKT 41
>HYIN2_BRAJA (P19922) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 465 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = +1 Query: 85 EVRRFSSDRVGELRSLHGAVSALVSGRFQQPRTARRRTTGHLPSKRRRTS 234 + RR S+ G RS G+ GR PR AR PS+ RR S Sbjct: 28 DARRQSAAERGCRRSQRGSAEGCACGRQTGPRAARSACCTACPSRSRRMS 77
>ATI2_HHV11 (P10230) Alpha trans-inducing factor 78 kDa protein| Length = 718 Score = 28.5 bits (62), Expect = 4.0 Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Frame = -3 Query: 392 ACHRWVRSRRA-----PSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLV 228 A R R RRA P P +P A PA++ E P A A P Sbjct: 481 ASTRRFRRRRADGAGPPLPDANDPVAEPPAAATQPATYYTHMGEVPPRLPARNVAGP--D 538 Query: 227 RRRLEGRCPVVRRRAVRGCWKRP 159 RR CP++ RRA G RP Sbjct: 539 RRPPAATCPLLVRRASLGSLDRP 561
>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12| Length = 838 Score = 28.5 bits (62), Expect = 4.0 Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 8/99 (8%) Frame = -3 Query: 350 ATENPSAGLPASSXXXXXXXXXRAEG----LPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 AT P+ G P S ++ LP S A + GRC R Sbjct: 227 ATTPPNQGRPDSPVYANLQELKISQSALPPLPGSPAIQVNGEWETHKDSSGRCYYYNRTT 286 Query: 182 VRGCWKRPLTRAETAPCRDRSSPTR----SDEKRRTSSC 78 WK P + + RD SP S E+ SSC Sbjct: 287 QERTWKPPRWARDVSTSRDFQSPGEQEPLSSEENYHSSC 325
>NO75_PEA (P16329) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)| Length = 112 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/20 (45%), Positives = 11/20 (55%) Frame = +3 Query: 177 PHRTPPHHGAPPLQAPSHKQ 236 PH PPH PP P H++ Sbjct: 2 PHEKPPHENTPPEYQPPHEK 21
>NO75_SOYBN (P08297) Early nodulin 75 precursor (N-75) (NGM-75)| Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/20 (45%), Positives = 11/20 (55%) Frame = +3 Query: 177 PHRTPPHHGAPPLQAPSHKQ 236 PH PPH PP P H++ Sbjct: 103 PHEKPPHENPPPEHQPPHEK 122
>YPD9_CAEEL (Q11188) Hypothetical protein C05D11.9| Length = 752 Score = 28.1 bits (61), Expect = 5.3 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 11/116 (9%) Frame = +1 Query: 82 LEVRRFSSDRVGELRSLHGAVS--ALVSGRFQQ-PRTARRRTTGHLPSK------RR--R 228 +EV +F R + L A+ ALVSG + PRTA +R H+ + RR R Sbjct: 3 IEVEKFVEARTNSIAQLLKAIDNDALVSGEVTKGPRTAAQRLPRHMRRRAMAYDIRRFPR 62 Query: 229 TSRGAAAGQAPEEGNPSAXXXXXXXXXXELAGNPAEGFSVAGDGARRLRTHLWHAK 396 T R AA + S G L TH+WHAK Sbjct: 63 TMREFAAAHLISKHAKKCPSRFARRKSANSRTKFGRSTSTKGIW---LSTHVWHAK 115
>SYV_DECAR (Q47BG6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 943 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -2 Query: 96 ASNFQLPRWRGHRAAASHYSNGRVCEGLGPL 4 A+ F L GH A H NG C G PL Sbjct: 635 ATRFVLMNVEGHDLALEHQQNGPACGGSAPL 665
>SOX9_PONPY (P61754) Transcription factor SOX-9| Length = 509 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 23/61 (37%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSEDSAGSPCPSGSGSDTENTR----PQENTFPKGEPDLKKESEEDKFPVCIREA 76 Query: 182 V 180 V Sbjct: 77 V 77
>SOX9_PANTR (Q9BG89) Transcription factor SOX-9| Length = 509 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 23/61 (37%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSEDSAGSPCPSGSGSDTENTR----PQENTFPKGEPDLKKESEEDKFPVCIREA 76 Query: 182 V 180 V Sbjct: 77 V 77
>SOX9_MACMU (P61753) Transcription factor SOX-9| Length = 509 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 23/61 (37%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSEDSAGSPCPSGSGSDTENTR----PQENTFPKGEPDLKKESEEDKFPVCIREA 76 Query: 182 V 180 V Sbjct: 77 V 77
>SOX9_HUMAN (P48436) Transcription factor SOX-9| Length = 509 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 23/61 (37%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSEDSAGSPCPSGSGSDTENTR----PQENTFPKGEPDLKKESEEDKFPVCIREA 76 Query: 182 V 180 V Sbjct: 77 V 77
>SOX9_CALJA (Q9BG91) Transcription factor SOX-9| Length = 509 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 23/61 (37%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSEDSAGSPCPSGSGSDTENTR----PQENTFPKGEPDLKKESEEDKFPVCIREA 76 Query: 182 V 180 V Sbjct: 77 V 77
>SOX9_MOUSE (Q04887) Transcription factor SOX-9| Length = 507 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 23/61 (37%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSEDSAGSPCPSGSGSDTENTR----PQENTFPKGEPDLKKESEEDKFPVCIREA 76 Query: 182 V 180 V Sbjct: 77 V 77
>DAM1_CANGA (Q6FLB2) DASH complex subunit DAM1 (Outer kinetochore protein DAM1)| Length = 307 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +1 Query: 127 SLHGAVSALVSGR--FQQPRTARRRTTG 204 SL G + +VSGR F+Q RT R TTG Sbjct: 267 SLGGGAARVVSGRNMFEQQRTTRHSTTG 294
>SOX9_CANFA (Q7YRJ7) Transcription factor SOX-9| Length = 513 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 23/61 (37%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSEDSAGSPCPSGSGSDTENTR----PQENTFPKGEPDLKKESEEDKFPVCIREA 76 Query: 182 V 180 V Sbjct: 77 V 77
>CAC1D_DROME (Q24270) Voltage-dependent calcium channel type D alpha-1 subunit| (DmCa1D) Length = 2516 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = -3 Query: 122 SSPTRSDEKRRTSSCRX---XXGTAPPPAITRMEGF 24 + PT S KRR SSC +APPP +T E + Sbjct: 190 TGPTSSSGKRRKSSCTSCGGGGISAPPPRLTPEEAW 225
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Frame = -2 Query: 387 PQVGAQPPRAITGD*EPLCGVASKLSPAPHPP*PTRRG-----VTLLGSLARRGTSACAT 223 PQ+ PP ++ P G + PAP PP P G + ++ L+ A+ Sbjct: 1937 PQLRVPPPTSVVTALTPTSGELAPPGPAPSPPPPEDLGPDFEDMEVVSGLSAADLDFAAS 1996 Query: 222 ALGGE 208 LG E Sbjct: 1997 LLGTE 2001
>BIME_EMENI (P24686) Negative regulator of mitosis| Length = 2073 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +1 Query: 178 RTARRRTTGHLPSKRRRTSRGAAAGQAPEEGNPSA 282 R +RR TG SKRR + G A G PSA Sbjct: 344 RKKKRRDTGGTRSKRRSSHFGMATGTTTPGARPSA 378
>SOX9_CHICK (P48434) Transcription factor SOX-9| Length = 494 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/61 (32%), Positives = 24/61 (39%) Frame = -3 Query: 362 APSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRA 183 APSP + SAG P S R P +P P L + E + PV R A Sbjct: 21 APSPTMSDDSAGSPCPSGSGSDTENTRP---PQENTFPKGDPDLKKESDEDKFPVCIREA 77 Query: 182 V 180 V Sbjct: 78 V 78
>MPP3_MOUSE (O88910) MAGUK p55 subfamily member 3 (MPP3 protein) (Dlgh3| protein) Length = 568 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 97 FSSDRVGELRSLHGAVSALVSGRFQQPRTARRRTTGHLPS 216 + + RVG+ G + S +FQ+ R + RRTTG LPS Sbjct: 271 WQAKRVGDTNLRAGLIP---SKQFQERRLSYRRTTGTLPS 307
>HELS_HALMA (Q5UYM9) Putative ski2-type helicase (EC 3.6.1.-)| Length = 799 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +2 Query: 8 GPKPSQTLP--FE*WLAAARCPRHRGSWKFDASRLTASENYG 127 GP PS+ FE WL+A + R W + T ++ YG Sbjct: 610 GPTPSEFEEGRFEDWLSALKTARLLEDWATEVDEATITDRYG 651
>CSMD3_HUMAN (Q7Z407) CUB and sushi domain-containing protein 3 precursor (CUB and| sushi multiple domains protein 3) Length = 3670 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -1 Query: 235 CLCDGAWRGGAPWCGGVRC 179 CL +G+W G P C V+C Sbjct: 3059 CLANGSWTGRQPECKAVQC 3077
>Y1612_HALMA (P20571) Hypothetical protein rrnAC1612| Length = 281 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Frame = +1 Query: 151 LVSGRFQQPRTARRRTTGHLPSKRRRTSRGAAAGQAPEEGNPSAXXXXXXXXXXELAGNP 330 + S R+ +P T+ R G L +R A APE G PS + + Sbjct: 188 IASSRYGEPVTSTR--LGQLAERRDAEGGMTVAFGAPERGLPSILDVAPDAVGGDQTSDE 245 Query: 331 AEGF-----SVAGDGARRLRT 378 EGF +V G+ +RT Sbjct: 246 PEGFDLWLNTVPNQGSEVVRT 266
>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1239 Score = 27.3 bits (59), Expect = 9.0 Identities = 28/102 (27%), Positives = 33/102 (32%) Frame = -3 Query: 380 WVRSRRAPSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCP 201 W +RRAP+P T P + P G PS W R GR P Sbjct: 923 WGNNRRAPAPTTSGPRSCTPG------------PPGQPSPSGW--------RPPGGGRTP 962 Query: 200 VVRRRAVRGCWKRPLTRAETAPCRDRSSPTRSDEKRRTSSCR 75 + RR P A A C P S +SCR Sbjct: 963 LARR--------APQPPARPATCAGSPQPDVS-----RASCR 991
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC| 2.7.11.1) Length = 1309 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 3/86 (3%) Frame = +1 Query: 127 SLHGAVSALVSGRFQQPRTARRRTTGHLPSKRRR---TSRGAAAGQAPEEGNPSAXXXXX 297 SLHG + L R P+T RR++T +P S +P G+P A Sbjct: 1160 SLHGLAAKLGPPR---PKTGRRKSTSSIPPSPLACPPISAPPPRSPSPLPGHPPAPARSP 1216 Query: 298 XXXXXELAGNPAEGFSVAGDGARRLR 375 + A G + G+ RR R Sbjct: 1217 RLRRGQSADKLGTGERLDGEAGRRTR 1242
>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)| Length = 1430 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 130 LHGAVSALVSGRFQQPRTARRRTTGHLPSKRRRTSR 237 L G + A +SG + A +++ HLP+ R TSR Sbjct: 659 LSGELQAALSGPAEAGAAAAEKSSNHLPATPRTTSR 694
>ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and Rad3-related-interacting| protein) Length = 791 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 175 PRTARRRTTGHLPSKRRRTSRGAAAGQAPEEGNP 276 PR TGH PSKR +RG +A AP+ +P Sbjct: 18 PRPGPPPGTGHPPSKR---ARGFSAAAAPDPDDP 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,238,143 Number of Sequences: 219361 Number of extensions: 882241 Number of successful extensions: 3501 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3497 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
