ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_194512.1| Oryza sativa (japonica cultivar-group) putative maize transposon MuDR mudrA-like protein (OSJNBa0071K19.12), mRNA Length = 2814 Score = 216 bits (109), Expect = 4e-53 Identities = 220/257 (85%) Strand = Plus / Plus Query: 138 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 197 ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct: 382 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 441 Query: 198 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 257 ||||||||||| ||||||||||||||| | || |||||||| || || | |||||||||| Sbjct: 442 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 501 Query: 258 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 317 ||||||||||| ||||| |||||||| || | || ||||| | || ||||| || || Sbjct: 502 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 561 Query: 318 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 377 ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 562 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 621 Query: 378 tttactgctagtgctgc 394 |||||||||||| |||| Sbjct: 622 tttactgctagttctgc 638
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 216 bits (109), Expect = 4e-53 Identities = 220/257 (85%) Strand = Plus / Minus Query: 138 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 197 ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct: 108840 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 108781 Query: 198 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 257 ||||||||||| ||||||||||||||| | || |||||||| || || | |||||||||| Sbjct: 108780 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 108721 Query: 258 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 317 ||||||||||| ||||| |||||||| || | || ||||| | || ||||| || || Sbjct: 108720 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 108661 Query: 318 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 377 ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 108660 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 108601 Query: 378 tttactgctagtgctgc 394 |||||||||||| |||| Sbjct: 108600 tttactgctagttctgc 108584
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 216 bits (109), Expect = 4e-53 Identities = 220/257 (85%) Strand = Plus / Minus Query: 138 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 197 ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct: 343782 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 343723 Query: 198 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 257 ||||||||||| ||||||||||||||| | || |||||||| || || | |||||||||| Sbjct: 343722 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 343663 Query: 258 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 317 ||||||||||| ||||| |||||||| || | || ||||| | || ||||| || || Sbjct: 343662 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 343603 Query: 318 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 377 ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 343602 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 343543 Query: 378 tttactgctagtgctgc 394 |||||||||||| |||| Sbjct: 343542 tttactgctagttctgc 343526
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 216 bits (109), Expect = 4e-53 Identities = 220/257 (85%) Strand = Plus / Minus Query: 138 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 197 ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct: 343782 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 343723 Query: 198 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 257 ||||||||||| ||||||||||||||| | || |||||||| || || | |||||||||| Sbjct: 343722 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 343663 Query: 258 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 317 ||||||||||| ||||| |||||||| || | || ||||| | || ||||| || || Sbjct: 343662 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 343603 Query: 318 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 377 ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 343602 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 343543 Query: 378 tttactgctagtgctgc 394 |||||||||||| |||| Sbjct: 343542 tttactgctagttctgc 343526
>dbj|AK111158.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H09, full insert sequence Length = 3614 Score = 216 bits (109), Expect = 4e-53 Identities = 220/257 (85%) Strand = Plus / Plus Query: 138 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 197 ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct: 835 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 894 Query: 198 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 257 ||||||||||| ||||||||||||||| | || |||||||| || || | |||||||||| Sbjct: 895 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 954 Query: 258 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 317 ||||||||||| ||||| |||||||| || | || ||||| | || ||||| || || Sbjct: 955 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 1014 Query: 318 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 377 ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 1015 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 1074 Query: 378 tttactgctagtgctgc 394 |||||||||||| |||| Sbjct: 1075 tttactgctagttctgc 1091
>dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C11, full insert sequence Length = 3124 Score = 216 bits (109), Expect = 4e-53 Identities = 220/257 (85%) Strand = Plus / Plus Query: 138 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 197 ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct: 309 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 368 Query: 198 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 257 ||||||||||| ||||||||||||||| | || |||||||| || || | |||||||||| Sbjct: 369 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 428 Query: 258 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 317 ||||||||||| ||||| |||||||| || | || ||||| | || ||||| || || Sbjct: 429 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 488 Query: 318 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 377 ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 489 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 548 Query: 378 tttactgctagtgctgc 394 |||||||||||| |||| Sbjct: 549 tttactgctagttctgc 565
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 216 bits (109), Expect = 4e-53 Identities = 220/257 (85%) Strand = Plus / Minus Query: 138 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 197 ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct: 343779 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 343720 Query: 198 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 257 ||||||||||| ||||||||||||||| | || |||||||| || || | |||||||||| Sbjct: 343719 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 343660 Query: 258 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 317 ||||||||||| ||||| |||||||| || | || ||||| | || ||||| || || Sbjct: 343659 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 343600 Query: 318 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 377 ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 343599 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 343540 Query: 378 tttactgctagtgctgc 394 |||||||||||| |||| Sbjct: 343539 tttactgctagttctgc 343523
>gb|AC124488.3| Mus musculus BAC clone RP23-452K20 from chromosome 1, complete sequence Length = 178446 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 298 cattcaagtacttccttccaaa 319 |||||||||||||||||||||| Sbjct: 88165 cattcaagtacttccttccaaa 88186
>gb|AC139231.11| Mus musculus chromosome 1, clone RP24-87I22, complete sequence Length = 191438 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 agatgtcccttgacagcttc 251 |||||||||||||||||||| Sbjct: 60129 agatgtcccttgacagcttc 60110
>gb|AC114817.3| Mus musculus BAC clone RP23-28O15 from 14, complete sequence Length = 211624 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tgaggtgtccaaagtgttcc 276 |||||||||||||||||||| Sbjct: 167411 tgaggtgtccaaagtgttcc 167430
>gb|DQ011069.1| Oreochromis mossambicus cytochrome c oxidase subunit Va preprotein-like mRNA, partial sequence Length = 306 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccttgacagcttcaaggatg 258 |||||||||||||||||||| Sbjct: 213 ccttgacagcttcaaggatg 232
>gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E23 map 3p, complete sequence Length = 156335 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 aataacaggacgctcatcacaatc 344 ||||||||||||||||||| |||| Sbjct: 128091 aataacaggacgctcatcagaatc 128068
>emb|BX465847.15| Mouse DNA sequence from clone RP23-102L14 on chromosome X, complete sequence Length = 206399 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 atttacaaaggaggagaagc 208 |||||||||||||||||||| Sbjct: 135005 atttacaaaggaggagaagc 135024
>gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3p, complete sequence Length = 173592 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 aataacaggacgctcatcacaatc 344 ||||||||||||||||||| |||| Sbjct: 42022 aataacaggacgctcatcagaatc 42045 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,881,185 Number of Sequences: 3902068 Number of extensions: 2881185 Number of successful extensions: 47372 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47322 Number of HSP's gapped (non-prelim): 43 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
