ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50d05 |
|---|---|
| Clone Library Name | barley_pub |
>NU107_RAT (P52590) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)| (107 kDa nucleoporin) (p105) Length = 926 Score = 34.3 bits (77), Expect = 0.17 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402 +TT + +IP PS RQP P RS H IS + G PR + G + L Sbjct: 44 TTTPRSQIIPRTPSSFRQPFTPPSRSLLRHPDISYIFGTEGRSPRHIQSSGYLGNL 99
>NU107_HUMAN (P57740) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)| (107 kDa nucleoporin) Length = 925 Score = 32.7 bits (73), Expect = 0.50 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = +1 Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402 +TT +IP PS RQP RS IS +LG PR+T+ G L Sbjct: 44 NTTPRNQVIPRTPSSFRQPFTPTSRSLLRQPDISCILGTGGKSPRLTQSSGFFGNL 99
>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase A) (Class-II chitin synthase A) Length = 1013 Score = 32.7 bits (73), Expect = 0.50 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3 Query: 279 RSSTSRPA-PSEQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSXPRP 452 R + SRPA P+ + +VR P AAAS ++R ING+ R P ++ S RP Sbjct: 62 RYTASRPASPARPWSPTRAADWVRPPSAAASYYERADINGSPRPGTP-SSRYGGSPRRP 119
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 32.0 bits (71), Expect = 0.85 Identities = 13/50 (26%), Positives = 27/50 (54%) Frame = +3 Query: 321 ASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSXPRPSGYVQP 470 AS+N + +A +H ++ + A+ P P+KP +++ P + Y +P Sbjct: 470 ASSNPKPITGHHVSAGSHSKSAFSAATSHPKPIKPATSHAEPTTADYPKP 519
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 288 TSRPAPSEQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKP-QFTNSXPRPSGY 461 T +PAPS G N+ +S + G+NG+ L + P Q +N+ PRP Y Sbjct: 64 TPQPAPSNNGGF--NLQPGQSQPQQPPQNMGGGVNGSVLQELLMNPSQTSNNSPRPQAY 120
>YGY5_YEAST (P53071) Hypothetical 19.3 kDa protein in HAP2-ADE5,6 intergenic| region Length = 178 Score = 30.4 bits (67), Expect = 2.5 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Frame = +1 Query: 175 VYSIGHPATAGKQCLLSILHSTTTMTMMIPHYPSRG-----RQPAGQPP-RSRKAHRQIS 336 ++++G P TAG L SIL+ T ++ +P PSR R P PP H IS Sbjct: 45 IWALG-PHTAGPLLLFSILNCTPARSVTLPISPSRASISFTRMPLPTPPIEGLHEHLPIS 103 Query: 337 LMLGALKL 360 + G +++ Sbjct: 104 VNDGVMRV 111
>YMT6_YEAST (Q04215) Transposon Ty1 protein A| Length = 440 Score = 30.0 bits (66), Expect = 3.2 Identities = 25/91 (27%), Positives = 37/91 (40%) Frame = +3 Query: 180 FHRASRHRGEAMSVVNPPFYXXXXXXXTPLSFKRSSTSRPAPSEQEGASANITYVRSPKA 359 F R +RHR M+V + S + ST R +PS+++ S T PK+ Sbjct: 323 FLRYARHRCIHMTVADLFSDIHSMYEEQQESKRNKSTHRRSPSDEKKDSRTYTNTTKPKS 382 Query: 360 AASNHQRNGINGASRSPLPLKPQFTNSXPRP 452 N Q+ N SR+ N+ P P Sbjct: 383 ITRNSQKPN-NSQSRTARAHNVSTFNNSPGP 412
>H1A_CHITE (P40275) Histone H1A| Length = 232 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/65 (21%), Positives = 25/65 (38%) Frame = +3 Query: 276 KRSSTSRPAPSEQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSXPRPS 455 K + P P + T + PKAA + + + ++ P KP + P+P Sbjct: 131 KPKKAAAPKPKKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPAAAKPAAKKAAPKPK 190 Query: 456 GYVQP 470 +P Sbjct: 191 AAPKP 195
>DSRAD_MOUSE (Q99MU3) Double-stranded RNA-specific adenosine deaminase (EC| 3.5.4.-) (DRADA) (RNA adenosine deaminase 1) Length = 1178 Score = 29.3 bits (64), Expect = 5.5 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 19/98 (19%) Frame = +3 Query: 228 PPFYXXXXXXXTPLSFKRSSTSRPAPS----EQEGASANITYVRSPKAAAS--------- 368 PP + L KRS+ S PAP+ + S + P A AS Sbjct: 303 PPIWYLTDKKRERLQMKRSTHSAPAPTPTAVPEATRSPSFPACHPPPAGASSSVAASKRV 362 Query: 369 -NHQRNGINGASR-----SPLPLKPQFTNSXPRPSGYV 464 N Q I SR P+ L+P ++ P +GYV Sbjct: 363 ENGQEPAIKHESRHEARPGPMRLRPHAYHNGPSRAGYV 400
>OST2_HUMAN (Q9Y278) Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC| 2.8.2.29) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2) (Heparan sulfate 3-O-sulfotransferase 2) (h3-OST-2) Length = 367 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +3 Query: 291 SRPAPSEQEGASANITYVRSPKAAASNHQRNGINGASRSPLPL 419 S P PSE SA V +P+ + SNH + G R P L Sbjct: 76 SGPTPSEPSAPSAPAAAVPAPRLSGSNHSGSPKLGTKRLPQAL 118
>MAML1_HUMAN (Q92585) Mastermind-like protein 1 (Mam-1)| Length = 1016 Score = 29.3 bits (64), Expect = 5.5 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 9/74 (12%) Frame = +3 Query: 279 RSSTSRPAPSE-----QEG---ASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFT 434 + +T PAP + Q G +S ++ Y A+ S+++++ N S L + P Sbjct: 416 QQATPAPAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTN----SKLLMMPSVN 471 Query: 435 NSXPRPSG-YVQPT 473 S PRP G Y+QP+ Sbjct: 472 KSSPRPGGPYLQPS 485
>H1B_CHITE (P40276) Histone H1B| Length = 232 Score = 29.3 bits (64), Expect = 5.5 Identities = 14/65 (21%), Positives = 26/65 (40%) Frame = +3 Query: 276 KRSSTSRPAPSEQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSXPRPS 455 K+ + P + T + PKAAA+ + + ++ P KP + P+P Sbjct: 131 KKPKKAAAKPKKAGEKKVKKTIAKKPKAAAATKIKKPVAKTTKKPAAAKPAAKKAAPKPK 190 Query: 456 GYVQP 470 +P Sbjct: 191 AAPKP 195
>H1C_CHITE (P40277) Histone H1C| Length = 221 Score = 29.3 bits (64), Expect = 5.5 Identities = 14/65 (21%), Positives = 26/65 (40%) Frame = +3 Query: 276 KRSSTSRPAPSEQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSXPRPS 455 K+ + PS+ T + PKAA + + + ++ P KP + P+P Sbjct: 125 KKPKKAAAKPSKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPAAAKPAAKKAAPKPK 184 Query: 456 GYVQP 470 +P Sbjct: 185 AAPKP 189
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 28.9 bits (63), Expect = 7.2 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 20/90 (22%) Frame = +3 Query: 261 TPLSFKRSSTSRPAPSEQEGASANITYVRSPKAAASNHQRNGINGASRS----------- 407 TPL+ SS PS GA A+ +P+ S+ G+ AS+ Sbjct: 481 TPLASTPSSKPSVLPSPSAGAPASAETPLNPELGDSSASEPGLQAASQPAESPTPQGLVL 540 Query: 408 ---------PLPLKPQFTNSXPRPSGYVQP 470 PLP P + ++ P P G P Sbjct: 541 GPPAPPPPPPLPSGPAYASALPPPPGPPPP 570
>DLX2B_BRARE (Q98876) Homeobox protein Dlx2b (DLX-5) (Distal-less homeobox| protein 2b) Length = 276 Score = 28.9 bits (63), Expect = 7.2 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = +3 Query: 306 SEQEGASANITYVRSPKAA----ASNHQRNGINGASRSPLPLKPQFTNSXP 446 S G N+ Y SPKA AS++ G GAS SP P +P+ S P Sbjct: 65 SYHPGTVGNVHY--SPKAYDLGYASSYGAYGTYGASSSPTPTEPEKEESEP 113
>ANGP1_MOUSE (O08538) Angiopoietin-1 precursor (ANG-1)| Length = 498 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447
>ANGP1_HUMAN (Q15389) Angiopoietin-1 precursor (ANG-1)| Length = 498 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447
>ANGP1_BOVIN (O18920) Angiopoietin-1 precursor (ANG-1) (Fragment)| Length = 481 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446
>ANGP1_RAT (O35460) Angiopoietin-1 precursor (ANG-1)| Length = 497 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446
>ANGP1_CANFA (Q60FC1) Angiopoietin-1 precursor (ANG-1)| Length = 497 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,711,358 Number of Sequences: 219361 Number of extensions: 1012610 Number of successful extensions: 2603 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2498 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2600 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
