ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186470.1| Oryza sativa (japonica cultivar-group), mRNA 123 6e-25
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
3dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
4dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
5gb|AY332473.1| Oryza sativa (japonica cultivar-group) transmembr... 115 1e-22
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
7dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
8gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.6
9gb|AF450286.1| Letharia vulpina D133 internal transcribed spacer... 40 6.4
10gb|AF115762.2|AF115762 Letharia columbiana 18S ribosomal RNA, pa... 40 6.4
11gb|AF228470.1|AF228470 Letharia vulpina small subunit ribosomal ... 40 6.4
12dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.4 
>ref|NM_186470.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2394

 Score =  123 bits (62), Expect = 6e-25
 Identities = 104/118 (88%)
 Strand = Plus / Plus

                                                                       
Query: 292 acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 351
           ||||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 125 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 184

                                                                     
Query: 352 agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 409
           ||||| | || || || || ||||||||||  || |||||||||||||| ||||||||
Sbjct: 185 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 242
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  123 bits (62), Expect = 6e-25
 Identities = 104/118 (88%)
 Strand = Plus / Plus

                                                                           
Query: 292     acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 351
               ||||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3616247 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 3616306

                                                                         
Query: 352     agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 409
               ||||| | || || || || ||||||||||  || |||||||||||||| ||||||||
Sbjct: 3616307 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 3616364
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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1641_C04
          Length = 134367

 Score =  123 bits (62), Expect = 6e-25
 Identities = 104/118 (88%)
 Strand = Plus / Plus

                                                                         
Query: 292   acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 351
             ||||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 85564 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 85623

                                                                       
Query: 352   agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 409
             ||||| | || || || || ||||||||||  || |||||||||||||| ||||||||
Sbjct: 85624 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 85681
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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0039H02
          Length = 169162

 Score =  123 bits (62), Expect = 6e-25
 Identities = 104/118 (88%)
 Strand = Plus / Plus

                                                                          
Query: 292    acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 351
              ||||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 154197 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 154256

                                                                        
Query: 352    agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 409
              ||||| | || || || || ||||||||||  || |||||||||||||| ||||||||
Sbjct: 154257 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 154314
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>gb|AY332473.1| Oryza sativa (japonica cultivar-group) transmembrane protein kinase
           (PK2) mRNA, complete cds
          Length = 2690

 Score =  115 bits (58), Expect = 1e-22
 Identities = 103/118 (87%)
 Strand = Plus / Plus

                                                                       
Query: 292 acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 351
           ||||| ||| |||||||  ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 241 acccggcggagctcggccactggcacaactacaccgacttctgctacggcggcgactaca 300

                                                                     
Query: 352 agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 409
           ||||| | || || || || ||||||||||  || |||||||||||||| ||||||||
Sbjct: 301 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 358
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 442      cttctccatcgacgcgctcttcaccacgct 471
                |||||||  |||||||||||||||||||||
Sbjct: 22748525 cttctccgccgacgcgctcttcaccacgct 22748554
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>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633E08
          Length = 136471

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 442   cttctccatcgacgcgctcttcaccacgct 471
             |||||||  |||||||||||||||||||||
Sbjct: 35476 cttctccgccgacgcgctcttcaccacgct 35505
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    gctacggcggcgactacaaga 354
              |||||||||||||||||||||
Sbjct: 800994 gctacggcggcgactacaaga 800974
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>gb|AF450286.1| Letharia vulpina D133 internal transcribed spacer 1 and 5.8S
           ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 509

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 gggagaccccggggcccgcc 429
           ||||||||||||||||||||
Sbjct: 97  gggagaccccggggcccgcc 78
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>gb|AF115762.2|AF115762 Letharia columbiana 18S ribosomal RNA, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA and internal
           transcribed spacer 2, complete sequence; and 23S
           ribosomal RNA, partial sequence
          Length = 569

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 gggagaccccggggcccgcc 429
           ||||||||||||||||||||
Sbjct: 130 gggagaccccggggcccgcc 111
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>gb|AF228470.1|AF228470 Letharia vulpina small subunit ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene and internal transcribed spacer 2, complete
           sequence; and large subunit ribosomal RNA gene, partial
           sequence
          Length = 679

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 gggagaccccggggcccgcc 429
           ||||||||||||||||||||
Sbjct: 165 gggagaccccggggcccgcc 146
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     ggcggcgactacaagaccgc 358
               ||||||||||||||||||||
Sbjct: 6652061 ggcggcgactacaagaccgc 6652080


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,715,305
Number of Sequences: 3902068
Number of extensions: 3715305
Number of successful extensions: 69751
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69593
Number of HSP's gapped (non-prelim): 158
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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