>YPD9_CAEEL (Q11188) Hypothetical protein C05D11.9|
          Length = 752

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
 Frame = +3

Query: 123 LEVRRFSSDRVGELRSLHGAVS--ALVSGRFQQ-PRTARRRTTGHLPSK------RR--R 269
           +EV +F   R   +  L  A+   ALVSG   + PRTA +R   H+  +      RR  R
Sbjct: 3   IEVEKFVEARTNSIAQLLKAIDNDALVSGEVTKGPRTAAQRLPRHMRRRAMAYDIRRFPR 62

Query: 270 TSRGAAAGQAPEEGNPSAXXXXXXXXXXELAGNPAEGFSVAGDGARRLRTHLWHAKRFAM 449
           T R  AA     +                         S  G     L TH+WHAKRF M
Sbjct: 63  TMREFAAAHLISKHAKKCPSRFARRKSANSRTKFGRSTSTKGIW---LSTHVWHAKRFRM 119

>RIN1_HUMAN (Q13671) Ras and Rab interactor 1 (Ras interaction/interference|
           protein 1) (Ras inhibitor JC99)
          Length = 783

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = -2

Query: 400 PSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGAWPAAAPLLVRRRLEGRCPVVRRRAV 221
           P P+ +    G P+SS           EG+P S   PA +P L RRR     P++R  + 
Sbjct: 307 PMPSLQEVDCGSPSSSEE---------EGVPGSRGSPATSPHLGRRR-----PLLRSMSA 352

Query: 220 RGCW----KRPLTRAETAPCRDR 164
             C     +R + RA  A  +DR
Sbjct: 353 AFCSLLAPERQVGRAAAALMQDR 375

>ATI2_HHV11 (P10230) Alpha trans-inducing factor 78 kDa protein|
          Length = 718

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
 Frame = -2

Query: 460 PPPAMANLFACHRWVRSRRA-----PSPATENPSAGLPASSXXXXXXXXXRAEGLPSSGA 296
           P P + +  A  R  R RRA     P P   +P A  PA++           E  P   A
Sbjct: 472 PRPRLHSTPASTRRFRRRRADGAGPPLPDANDPVAEPPAAATQPATYYTHMGEVPPRLPA 531

Query: 295 WPAAAPLLVRRRLEGRCPVVRRRAVRGCWKRP 200
              A P   RR     CP++ RRA  G   RP
Sbjct: 532 RNVAGP--DRRPPAATCPLLVRRASLGSLDRP 561

>MBB1A_HUMAN (Q9BQG0) Myb-binding protein 1A|
          Length = 1328

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 210  QQPRTARRRTTGHLPSKRRRTSRGAAAGQAPEEGNPSA 323
            Q P + +R+  G LP  ++R  R +  G   E+G P+A
Sbjct: 1162 QSPISKKRKKKGFLPETKKRKKRKSEDGTPAEDGTPAA 1199

>BCSC_XANAC (P58938) Cellulose synthase operon protein C precursor|
          Length = 1508

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 29/101 (28%), Positives = 40/101 (39%)
 Frame = +3

Query: 117 RQLEVRRFSSDRVGELRSLHGAVSALVSGRFQQPRTARRRTTGHLPSKRRRTSRGAAAGQ 296
           +QLE     S +   LR   GA  +  +G     R ARR  +     +  R+   A AG+
Sbjct: 90  QQLEGAHPQSPQAQRLRVAIGARGSSSAGEDSNLRNARRAASAGRYVEAARSYEAAFAGK 149

Query: 297 APEEGNPSAXXXXXXXXXXELAGNPAEGFSVAGDGARRLRT 419
            P                  LAG P  G+  A DG RRL++
Sbjct: 150 PPPPN-------LALEYYQSLAGTPT-GWERARDGLRRLQS 182

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 213 QPRTARRRTTGHLPSKRRRTSRGAAAGQAPEEG 311
           +P   RRR T   PS++++  RG  A +A  EG
Sbjct: 171 RPTYRRRRPTAATPSRKKKARRGPKASKAGREG 203

>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 491 APVEPMARRNPTACHGEPLCMPQV--GAQPPRAITGD*EPLCGVASKLSPAPHPP 333
           AP  P  R  P    G+P   P+   G +PP A+TG   P   +  +L P  HPP
Sbjct: 153 APAAPPERSGPV---GDPPGPPRAERGRRPPPALTGGALPSAALPPQLGPM-HPP 203

>K6PF1_CANAL (O94201) 6-phosphofructokinase alpha subunit (EC 2.7.1.11)|
           (Phosphofructokinase 1) (Phosphohexokinase) (6PF-1-K
           alpha subunit) (CaPFK1)
          Length = 987

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 141 SSDRVGELRSLHGAVSALVSGRFQQPRTARRRTTGHLPSKRRRTSRGAAAGQAPEEGNPS 320
           + D +  + S     + L   RFQ P     +TT  + +KR+++  G+  G   EE +PS
Sbjct: 159 AEDPLNNIISFSNTQNELCKTRFQSPEEYVEKTTAEILAKRKKSQLGSKFGSF-EEISPS 217

>HYIN2_BRAJA (P19922) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 465

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 126 EVRRFSSDRVGELRSLHGAVSALVSGRFQQPRTARRRTTGHLPSKRRRTS 275
           + RR S+   G  RS  G+      GR   PR AR       PS+ RR S
Sbjct: 28  DARRQSAAERGCRRSQRGSAEGCACGRQTGPRAARSACCTACPSRSRRMS 77

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -1

Query: 473 ARRNPTACHGEPLCMPQVGAQPPRAITGD*EPLCGVASKLSPAPHPP 333
           A+ +P A    P   P   ++P +  +   E   G+  K  P P PP
Sbjct: 573 AKASPQAAKASPQAKPLRASEPSKTSSSAPEKKTGIPVKAEPVPKPP 619

>Y4DX_RHISN (P55423) Hypothetical 20.6 kDa protein y4dX|
          Length = 192

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 253 GRCPVVRRRAVRGCWKRPLTRAETAPCRDRSSPT 152
           GR  V RR  +RG  K+P+ R   AP    SS T
Sbjct: 8   GRGAVGRREMLRGSGKKPIQRLAKAPAATASSKT 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,693,000
Number of Sequences: 219361
Number of extensions: 1319696
Number of successful extensions: 4669
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4663
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)