ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50c12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046K22, full insert sequence Length = 2513 Score = 167 bits (84), Expect = 3e-38 Identities = 162/188 (86%) Strand = Plus / Plus Query: 214 tggcggtcctgcgaccaggttgacaatgggagcccttcgacgtcccctcccttctgggac 273 |||||||||||||| ||||| || | | |||||||||||||||||| ||||| |||||| Sbjct: 294 tggcggtcctgcgagcaggtggagagcgagagcccttcgacgtccccgcccttttgggac 353 Query: 274 actgatggcgaagacgatgatcctgggccctgtccttcaaatttattcgggcgacatact 333 ||||| || || |||||||||||||| ||| |||||| ||||||| ||||| ||||| Sbjct: 354 actgacggtgatgacgatgatcctggccccaaaccttcagatttatttgggcggtatact 413 Query: 334 tggagaattcagaacttctcaaaggagaagaagagagaaatgaaaagtgaaccatttgga 393 ||||||||| | || || ||||||||||||||||||||||||||||| || ||||||| | Sbjct: 414 tggagaattgaaaatttttcaaaggagaagaagagagaaatgaaaagcgagccatttgaa 473 Query: 394 gctggtgg 401 |||||||| Sbjct: 474 gctggtgg 481
>ref|NM_191458.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3837 Score = 109 bits (55), Expect = 7e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 307 ccttcaaatttattcgggcgacatacttggagaattcagaacttctcaaaggagaagaag 366 |||||| ||||||| |||||| |||||||||||||| | ||||| ||||||||||| || Sbjct: 289 ccttcagatttatttgggcgatatacttggagaattgaaaacttttcaaaggagaaaaaa 348 Query: 367 agagaaatgaaaagtgaaccatttggagctggtgg 401 |||||||||||||| |||||||||| ||||||||| Sbjct: 349 agagaaatgaaaagcgaaccatttgaagctggtgg 383 Score = 77.8 bits (39), Expect = 2e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 208 tctgaatggcggtcctgcgaccaggttgacaatgggagcccttcgacgtcccctcccttc 267 ||||| || ||||||||||| || || || |||||||||||||| ||| |||||||||| Sbjct: 181 tctgattgtcggtcctgcgagcatgtcgagaatgggagcccttccacggcccctcccttt 240 Query: 268 tgggacactgatggcgaagacgatgatcctg 298 |||||| ||||||| ||||| || ||||||| Sbjct: 241 tgggactctgatggtgaagatgacgatcctg 271
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 109 bits (55), Expect = 7e-21 Identities = 85/95 (89%) Strand = Plus / Minus Query: 307 ccttcaaatttattcgggcgacatacttggagaattcagaacttctcaaaggagaagaag 366 |||||| ||||||| |||||| |||||||||||||| | ||||| ||||||||||| || Sbjct: 32774422 ccttcagatttatttgggcgatatacttggagaattgaaaacttttcaaaggagaaaaaa 32774363 Query: 367 agagaaatgaaaagtgaaccatttggagctggtgg 401 |||||||||||||| |||||||||| ||||||||| Sbjct: 32774362 agagaaatgaaaagcgaaccatttgaagctggtgg 32774328 Score = 79.8 bits (40), Expect = 6e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 208 tctgaatggcggtcctgcgaccaggttgacaatgggagcccttcgacgtcccctcccttc 267 ||||| || ||||||||||| || || || |||||||||||||| ||| |||||||||| Sbjct: 32775968 tctgattgtcggtcctgcgagcatgtcgagaatgggagcccttccacggcccctcccttt 32775909 Query: 268 tgggacactgatggcgaagacgatgatcctgg 299 |||||| ||||||| ||||| || |||||||| Sbjct: 32775908 tgggactctgatggtgaagatgacgatcctgg 32775877 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 2749040 cgcgccgccgccgccacagcac 2749019 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 2749006 cgcgccgccgccgccacagcac 2748985 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 2748972 cgcgccgccgccgccacagcac 2748951
>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0490D09 Length = 154430 Score = 109 bits (55), Expect = 7e-21 Identities = 85/95 (89%) Strand = Plus / Minus Query: 307 ccttcaaatttattcgggcgacatacttggagaattcagaacttctcaaaggagaagaag 366 |||||| ||||||| |||||| |||||||||||||| | ||||| ||||||||||| || Sbjct: 137217 ccttcagatttatttgggcgatatacttggagaattgaaaacttttcaaaggagaaaaaa 137158 Query: 367 agagaaatgaaaagtgaaccatttggagctggtgg 401 |||||||||||||| |||||||||| ||||||||| Sbjct: 137157 agagaaatgaaaagcgaaccatttgaagctggtgg 137123 Score = 79.8 bits (40), Expect = 6e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 208 tctgaatggcggtcctgcgaccaggttgacaatgggagcccttcgacgtcccctcccttc 267 ||||| || ||||||||||| || || || |||||||||||||| ||| |||||||||| Sbjct: 138763 tctgattgtcggtcctgcgagcatgtcgagaatgggagcccttccacggcccctcccttt 138704 Query: 268 tgggacactgatggcgaagacgatgatcctgg 299 |||||| ||||||| ||||| || |||||||| Sbjct: 138703 tgggactctgatggtgaagatgacgatcctgg 138672
>dbj|AK102133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085E13, full insert sequence Length = 4086 Score = 109 bits (55), Expect = 7e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 307 ccttcaaatttattcgggcgacatacttggagaattcagaacttctcaaaggagaagaag 366 |||||| ||||||| |||||| |||||||||||||| | ||||| ||||||||||| || Sbjct: 367 ccttcagatttatttgggcgatatacttggagaattgaaaacttttcaaaggagaaaaaa 426 Query: 367 agagaaatgaaaagtgaaccatttggagctggtgg 401 |||||||||||||| |||||||||| ||||||||| Sbjct: 427 agagaaatgaaaagcgaaccatttgaagctggtgg 461 Score = 77.8 bits (39), Expect = 2e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 208 tctgaatggcggtcctgcgaccaggttgacaatgggagcccttcgacgtcccctcccttc 267 ||||| || ||||||||||| || || || |||||||||||||| ||| |||||||||| Sbjct: 259 tctgattgtcggtcctgcgagcatgtcgagaatgggagcccttccacggcccctcccttt 318 Query: 268 tgggacactgatggcgaagacgatgatcctg 298 |||||| ||||||| ||||| || ||||||| Sbjct: 319 tgggactctgatggtgaagatgacgatcctg 349
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 307 ccttcaaatttattcgggcgacatacttggagaattcagaacttctcaaaggagaagaag 366 |||||| ||||||| ||||| |||||||||||||| | || || ||||||||||||||| Sbjct: 47624 ccttcagatttatttgggcggtatacttggagaattgaaaatttttcaaaggagaagaag 47683 Query: 367 agagaaatgaaaagtgaaccatttggagctggtgg 401 |||||||||||||| || ||||||| ||||||||| Sbjct: 47684 agagaaatgaaaagcgagccatttgaagctggtgg 47718 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 214 tggcggtcctgcgaccaggttgacaatgggagcccttcgacgtcccctcccttctgggac 273 |||||||||||||| ||||| || | | |||||||||||||||||| ||||| |||||| Sbjct: 45936 tggcggtcctgcgagcaggtggagagcgagagcccttcgacgtccccgcccttttgggac 45995 Query: 274 actgatggcgaagacgatgatcctgg 299 ||||| || || |||||||||||||| Sbjct: 45996 actgacggtgatgacgatgatcctgg 46021
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 307 ccttcaaatttattcgggcgacatacttggagaattcagaacttctcaaaggagaagaag 366 |||||| ||||||| ||||| |||||||||||||| | || || ||||||||||||||| Sbjct: 24978771 ccttcagatttatttgggcggtatacttggagaattgaaaatttttcaaaggagaagaag 24978830 Query: 367 agagaaatgaaaagtgaaccatttggagctggtgg 401 |||||||||||||| || ||||||| ||||||||| Sbjct: 24978831 agagaaatgaaaagcgagccatttgaagctggtgg 24978865 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 214 tggcggtcctgcgaccaggttgacaatgggagcccttcgacgtcccctcccttctgggac 273 |||||||||||||| ||||| || | | |||||||||||||||||| ||||| |||||| Sbjct: 24977083 tggcggtcctgcgagcaggtggagagcgagagcccttcgacgtccccgcccttttgggac 24977142 Query: 274 actgatggcgaagacgatgatcctgg 299 ||||| || || |||||||||||||| Sbjct: 24977143 actgacggtgatgacgatgatcctgg 24977168 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 gaagaagagagaaatgaaaa 379 |||||||||||||||||||| Sbjct: 22603121 gaagaagagagaaatgaaaa 22603102
>gb|AC132442.3| Mus musculus BAC clone RP23-240K23 from chromosome 10, complete sequence Length = 201145 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 348 cttctcaaaggagaagaagagaga 371 |||||||||||||||||||||||| Sbjct: 146777 cttctcaaaggagaagaagagaga 146800
>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080 Length = 340000 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 |||||||||||||||||||||||| Sbjct: 66424 tctttctctgcctccctctctcct 66447
>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence Length = 188320 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 |||||||||||||||||||||||| Sbjct: 111482 tctttctctgcctccctctctcct 111505
>gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21q22.2, complete sequence Length = 132088 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 |||||||||||||||||||||||| Sbjct: 70664 tctttctctgcctccctctctcct 70687
>gb|AC138341.9| Mus musculus chromosome 5, clone RP23-37N15, complete sequence Length = 176410 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctctcc 28 ||||||||||||||||||||||| Sbjct: 134596 tctttctctgcctccctctctcc 134574
>gb|AC137711.21| Mus musculus chromosome 5, clone RP23-282A16, complete sequence Length = 181459 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctctcc 28 ||||||||||||||||||||||| Sbjct: 392 tctttctctgcctccctctctcc 370
>ref|XM_550164.1| Oryza sativa (japonica cultivar-group), mRNA Length = 510 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 366 cgcgccgccgccgccacagcac 387 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 332 cgcgccgccgccgccacagcac 353 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 298 cgcgccgccgccgccacagcac 319
>gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, complete sequence Length = 195811 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctcc 28 |||||||||||| ||||||||||||| Sbjct: 186871 ctttctttctctccctccctctctcc 186846
>gb|AC010178.40| Homo sapiens 12 BAC RP11-303O9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177828 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctcc 28 |||||||||||| ||||||||||||| Sbjct: 76367 ctttctttctctccctccctctctcc 76342
>gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, complete sequence Length = 90583 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctcc 28 |||||||||||| ||||||||||||| Sbjct: 48685 ctttctttctctccctccctctctcc 48660
>emb|AL603831.23| Human DNA sequence from clone RP11-486H9 on chromosome 10 Contains the 3' end of the gene for adenovirus 5 E1A binding protein (BS69), the gene for a novel protein (KIAA0934) and four CpG islands, complete sequence Length = 179755 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 333 ttggagaattcagaacttctca 354 |||||||||||||||||||||| Sbjct: 83846 ttggagaattcagaacttctca 83825
>emb|AL160053.15| Human DNA sequence from clone RP11-536D16 on chromosome 9 Contains the 3' end of the variant for the C9orf93 gene for chromosome 9 open reading frame 93, complete sequence Length = 172845 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 tctctgcctccctctctcctgt 31 |||||||||||||||||||||| Sbjct: 62240 tctctgcctccctctctcctgt 62219
>gb|AC007716.8| Homo sapiens chromosome , clone RP11-94O8, complete sequence Length = 166759 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctcc 28 ||||||||||||||||| |||||||| Sbjct: 151938 ctttctttctctgcctctctctctcc 151913
>gb|AC148317.3| Pan troglodytes BAC clone CH251-519K22 from chromosome 7, complete sequence Length = 154065 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctcc 28 |||||||||||| ||||||||||||| Sbjct: 26616 ctttctttctctccctccctctctcc 26591
>gb|AC158678.6| Mus musculus 6 BAC RP23-142I6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217586 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 4 tttctttctctgcctccctctctcct 29 ||||||||||||||||||||| |||| Sbjct: 47597 tttctttctctgcctccctctttcct 47622
>gb|AC112255.4| Homo sapiens BAC clone RP11-1193F23 from 2, complete sequence Length = 136713 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 357 ggagaagaagagagaaatgaaa 378 |||||||||||||||||||||| Sbjct: 110767 ggagaagaagagagaaatgaaa 110788
>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence Length = 151319 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcctgt 31 ||||||||| |||||||||||||||| Sbjct: 66830 tctttctctccctccctctctcctgt 66855
>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0009G03 Length = 163526 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 54717 cgcgccgccgccgccacagcac 54696 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 54683 cgcgccgccgccgccacagcac 54662 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagcac 66 |||||||||||||||||||||| Sbjct: 54649 cgcgccgccgccgccacagcac 54628
>emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B10, complete sequence Length = 182378 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 ctctgcctccctctctcctgtctgtc 36 ||||||||||||||||||| |||||| Sbjct: 57747 ctctgcctccctctctcctatctgtc 57772
>gb|AC153841.1| Mus musculus 6 BAC RP23-260M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190541 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 tttctttctctgcctccctctctcct 29 ||||||||||||||||||||| |||| Sbjct: 27554 tttctttctctgcctccctctttcct 27529
>emb|AL607066.23| Mouse DNA sequence from clone RP23-406N5 on chromosome 4, complete sequence Length = 194837 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctc 27 |||||||||||||||||||||| Sbjct: 57137 tctttctctgcctccctctctc 57158
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence Length = 1618915 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctc 27 |||||||||||| |||||||||||| Sbjct: 593516 ctttctttctctccctccctctctc 593492
>gb|AC013353.9| Trypanosoma brucei chromosome 6 clone RPCI93-28P18, complete sequence Length = 149023 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctc 27 |||||||||||| |||||||||||| Sbjct: 85976 ctttctttctctccctccctctctc 85952
>gb|AC164603.4| Mus musculus chromosome 8, clone RP24-114E3, complete sequence Length = 164927 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcct 29 |||||||||| |||||||||||||| Sbjct: 119616 ttctttctcttcctccctctctcct 119592
>gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chromosome 7, complete sequence Length = 176962 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gggatgaggatcagagtgtgt 193 ||||||||||||||||||||| Sbjct: 137872 gggatgaggatcagagtgtgt 137892
>gb|AC002410.2| Homo sapiens BAC clone CTA-264L19 from 7, complete sequence Length = 96217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 ctttctctgcctccctctctc 27 ||||||||||||||||||||| Sbjct: 80248 ctttctctgcctccctctctc 80268
>gb|AC144861.3| Mus musculus BAC clone RP23-63D4 from chromosome 18, complete sequence Length = 176312 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 ggagaagaagagagaaatgaa 377 ||||||||||||||||||||| Sbjct: 2864 ggagaagaagagagaaatgaa 2884
>ref|XM_821969.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.5130) partial mRNA Length = 1614 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 gtggccagctgacgcagttgt 104 ||||||||||||||||||||| Sbjct: 353 gtggccagctgacgcagttgt 373
>gb|AC131651.3| Mus musculus BAC clone RP24-98G17 from chromosome 18, complete sequence Length = 162740 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 ggagaagaagagagaaatgaa 377 ||||||||||||||||||||| Sbjct: 43687 ggagaagaagagagaaatgaa 43667
>gb|AC122880.4| Mus musculus BAC clone RP23-77F18 from 8, complete sequence Length = 189549 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcct 29 |||||||||| |||||||||||||| Sbjct: 44315 ttctttctcttcctccctctctcct 44291
>gb|AC118724.18| Mus musculus, clone RP24-160H20, complete sequence Length = 197860 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 cttctcaaaggagaagaagag 368 ||||||||||||||||||||| Sbjct: 55203 cttctcaaaggagaagaagag 55183
>emb|BX571673.8| Human DNA sequence from clone RP11-323D18 on chromosome 1 Contains a novel gene, a tubulin beta polypeptide 4 member Q (TUBB4Q) pseudogene, the 3' end of a ribosomal protein L23a (RPL23A) pseudogene and a CpG island, complete sequence Length = 171915 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 ttctttctctgcctccctctctcct 29 |||||||||| |||||||||||||| Sbjct: 11597 ttctttctctccctccctctctcct 11621
>emb|AL365366.20| Human DNA sequence from clone RP11-553N16 on chromosome 1 Contains the 3' end of the gene for a novel protein (FLJ16613), a ribosomal protein L6 (RPL6) pseudogene, the EXO1 gene for exonuclease 1, the 5' end of a ribosomal protein L23a (RPL23a) pseudogene and a CpG island, complete sequence Length = 143967 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 ttctttctctgcctccctctctcct 29 |||||||||| |||||||||||||| Sbjct: 137376 ttctttctctccctccctctctcct 137400
>emb|AL133391.5| Human DNA sequence from clone RP11-22C13 on chromosome 9q21.31-22.1 Contains a ribosomal protein S6 (RPS6) pseudogene, complete sequence Length = 168324 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 357 ggagaagaagagagaaatgaaaagtgaac 385 ||||||||| ||||||||||||| ||||| Sbjct: 152119 ggagaagaaaagagaaatgaaaattgaac 152147
>emb|AL035706.10|HS836J3 Human DNA sequence from clone RP5-836J3 on chromosome 1p22.1-31.1 Contains a novel gene (FLJ40403), the 3' end of the gene for a novel protein containing a tubulin-tyrosine ligase family domain (FLJ44842, FLJ23033 and FLJ36855) and a novel gene, complete sequence Length = 143590 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gggatgaggatcagagtgtgt 193 ||||||||||||||||||||| Sbjct: 35040 gggatgaggatcagagtgtgt 35060
>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains the CDH22 gene for cadherin-like 22, a novel gene and two CpG islands, complete sequence Length = 147815 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctc 27 |||||||||||| |||||||||||| Sbjct: 12191 ctttctttctctccctccctctctc 12167
>gb|AC104186.2| Homo sapiens chromosome 3 clone RP11-391M1, complete sequence Length = 186317 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctct 26 ||||||||||||||||||||| Sbjct: 156440 tctttctctgcctccctctct 156420
>gb|AC120193.4| Homo sapiens chromosome 8, clone RP11-10H17, complete sequence Length = 174556 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctctc 27 |||||||||||||||| |||||||| Sbjct: 91383 ctttctttctctgccttcctctctc 91407
>dbj|AK143647.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430005J10 product:hypothetical protein, full insert sequence Length = 4431 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 cttctcaaaggagaagaagag 368 ||||||||||||||||||||| Sbjct: 1796 cttctcaaaggagaagaagag 1776
>gb|AC024958.8| Homo sapiens, clone RP11-561E1, complete sequence Length = 190534 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctc 27 |||||||||||||||| |||||||| Sbjct: 167519 ctttctttctctgccttcctctctc 167495
>gb|AC011850.12| Homo sapiens chromosome 15, clone RP11-364J18, complete sequence Length = 164681 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctctc 27 |||||||||||| |||||||||||| Sbjct: 82685 ctttctttctctccctccctctctc 82709
>gb|AC037486.4| Homo sapiens chromosome 8, clone RP11-398G24, complete sequence Length = 189041 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctct 26 ||||||||||||||||||||| Sbjct: 142528 tctttctctgcctccctctct 142548
>gb|AC007253.2| Homo sapiens BAC clone RP11-454P5 from 2, complete sequence Length = 225699 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gagaagaagagagaaatgaaa 378 ||||||||||||||||||||| Sbjct: 162144 gagaagaagagagaaatgaaa 162124
>gb|AC137488.2| Homo sapiens chromosome 16 clone CTD-2506I5, complete sequence Length = 167135 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctctc 27 ||||||||| ||||||||||||||| Sbjct: 100227 ctttctttccctgcctccctctctc 100251
>gb|AF003627.3| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 184788 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gggatgaggatcagagtgtgt 193 ||||||||||||||||||||| Sbjct: 58987 gggatgaggatcagagtgtgt 59007
>gb|AC055876.16| Homo sapiens chromosome 15, clone RP11-578F21, complete sequence Length = 192533 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 ttctttctctgcctccctctctcct 29 |||||||||| |||||||||||||| Sbjct: 153729 ttctttctctccctccctctctcct 153753
>gb|AC018765.4|AC018765 Homo sapiens chromosome 5 clone CTD-2351A16, complete sequence Length = 132916 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 354 aaaggagaagaagagagaaatgaaa 378 |||||||||||||||| |||||||| Sbjct: 1649 aaaggagaagaagagaaaaatgaaa 1673
>emb|AL162451.16| Human DNA sequence from clone RP11-145C1, complete sequence Length = 156963 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctctc 27 ||||||||| ||||||||||||||| Sbjct: 112938 ctttctttccctgcctccctctctc 112962
>emb|CT954328.2| Human DNA sequence from clone SC22CB-73C9 on chromosome 22, complete sequence Length = 40531 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctc 27 ||||||||| ||||||||||||||| Sbjct: 11034 ctttctttccctgcctccctctctc 11010
>emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 map Xq28, complete sequence Length = 178731 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gggatgaggatcagagtgtgt 193 ||||||||||||||||||||| Sbjct: 153173 gggatgaggatcagagtgtgt 153193
>emb|AL132719.4|CNS01DTH Human chromosome 14 DNA sequence BAC R-1082A3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171505 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 ctttctctgcctccctctctc 27 ||||||||||||||||||||| Sbjct: 121708 ctttctctgcctccctctctc 121728
>gb|AC138277.16| Mus musculus chromosome 1, clone RP23-67I1, complete sequence Length = 216155 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ttctttctctgcctccctctc 25 ||||||||||||||||||||| Sbjct: 157574 ttctttctctgcctccctctc 157594
>gb|AC120217.13| Mus musculus chromosome 1, clone RP24-542K6, complete sequence Length = 164016 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctc 25 ||||||||||||||||||||| Sbjct: 125620 ttctttctctgcctccctctc 125600
>gb|AC133192.3| Mus musculus BAC clone RP23-396C4 from 9, complete sequence Length = 197959 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctctc 27 ||||||||||||| ||||||||||| Sbjct: 134665 ctttctttctctgtctccctctctc 134689
>gb|AC145116.3| Mus musculus BAC clone RP23-434H14 from 6, complete sequence Length = 204134 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 cttctcaaaggagaagaagag 368 ||||||||||||||||||||| Sbjct: 36333 cttctcaaaggagaagaagag 36313
>gb|AC068908.21| Mus musculus BAC Clone 389o18 RPCI-23, complete sequence Length = 198576 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 cttctcaaaggagaagaagag 368 ||||||||||||||||||||| Sbjct: 168344 cttctcaaaggagaagaagag 168324
>emb|AL772217.10| Mouse DNA sequence from clone RP23-160K5 on chromosome 2, complete sequence Length = 202067 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctctc 27 ||||||||||||| ||||||||||| Sbjct: 181012 ctttctttctctgtctccctctctc 180988
>emb|AL390097.2|CNS06C7L Human chromosome 14 DNA sequence BAC C-2278M12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 92590 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaatgaaaa 379 |||||||||||||||| |||||||| Sbjct: 10361 aaggagaagaagagaggaatgaaaa 10337
>gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome 10, complete sequence Length = 231532 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 ||||||||| |||||||||||||| Sbjct: 81600 tctttctctccctccctctctcct 81623
>gb|AC151736.6| Mus musculus BAC clone RP23-9L16 from chromosome 8, complete sequence Length = 239812 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 36265 tctttctctgcctccctctc 36284
>gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome 13, complete sequence Length = 214062 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 tctctgcctccctctctcctgtct 33 ||||| |||||||||||||||||| Sbjct: 20423 tctctccctccctctctcctgtct 20400
>gb|AC169128.2| Mus musculus BAC clone RP23-306C13 from chromosome 13, complete sequence Length = 185965 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tttctctgcctccctctctc 27 |||||||||||||||||||| Sbjct: 71805 tttctctgcctccctctctc 71786
>ref|XM_482516.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1526 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttcatcgcgccgccgccgcc 59 |||||||||||||||||||| Sbjct: 69 ttcatcgcgccgccgccgcc 50
>ref|XM_465462.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2777 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagc 64 |||||||||||||||||||| Sbjct: 181 cgcgccgccgccgccacagc 162
>ref|NM_178040.1| Homo sapiens RAB6 interacting protein 2 (RAB6IP2), transcript variant epsilon, mRNA Length = 6893 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 20 cgccgccgccgccacagcac 1
>ref|NM_178039.1| Homo sapiens RAB6 interacting protein 2 (RAB6IP2), transcript variant delta, mRNA Length = 6809 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 20 cgccgccgccgccacagcac 1
>ref|NM_178038.1| Homo sapiens RAB6 interacting protein 2 (RAB6IP2), transcript variant gamma, mRNA Length = 6070 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 20 cgccgccgccgccacagcac 1
>ref|NM_178037.1| Homo sapiens RAB6 interacting protein 2 (RAB6IP2), transcript variant beta, mRNA Length = 7051 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 20 cgccgccgccgccacagcac 1
>ref|NM_186634.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1071 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 683 cgccgccgccgccacagcac 702
>ref|NM_015064.2| Homo sapiens RAB6 interacting protein 2 (RAB6IP2), transcript variant alpha, mRNA Length = 6919 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 20 cgccgccgccgccacagcac 1
>gb|AY023267.1| Oryza sativa microsatellite MRG5592 containing (GGC)X8, closest to marker R277, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 113 cgccgccgccgccacagcac 94
>gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1280_A04, complete sequence Length = 88553 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 gaagaagagagaaatgaaaa 379 |||||||||||||||||||| Sbjct: 15659 gaagaagagagaaatgaaaa 15640
>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence Length = 185822 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 73209 tttctttctctccctccctctctc 73186
>gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hospital Oakland Research Institute) complete sequence Length = 247588 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||| ||||||||||||||||||| Sbjct: 232134 ttctgtctctgcctccctctctcc 232111
>gb|BC074181.1| Xenopus laevis MGC82018 protein, mRNA (cDNA clone MGC:82018 IMAGE:7010758), complete cds Length = 4489 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 aagaagagagaaatgaaaagtgaa 384 |||||||||||||| ||||||||| Sbjct: 4134 aagaagagagaaattaaaagtgaa 4111
>ref|XM_586106.2| PREDICTED: Bos taurus similar to activator of basal transcription 1 (LOC539270), mRNA Length = 1492 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tttctctgcctccctctctc 27 |||||||||||||||||||| Sbjct: 1464 tttctctgcctccctctctc 1445
>gb|AC136019.3| Mus musculus BAC clone RP24-404D22 from chromosome 14, complete sequence Length = 162787 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 2146 tctttctctgcctccctctc 2127
>gb|AC102050.13| Mus musculus chromosome 8, clone RP23-389O4, complete sequence Length = 203942 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 5464 tctttctctgcctccctctc 5445
>gb|AC154670.2| Mus musculus BAC clone RP24-293L9 from chromosome 14, complete sequence Length = 163908 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 ||||||||| |||||||||||||| Sbjct: 1603 tctttctcttcctccctctctcct 1626
>gb|AC123619.6| Mus musculus chromosome 13, clone RP23-43E21, complete sequence Length = 164264 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 tctctgcctccctctctcctgtct 33 ||||| |||||||||||||||||| Sbjct: 34540 tctctccctccctctctcctgtct 34563
>gb|AC073258.9| Homo sapiens BAC clone RP11-221B19 from 7, complete sequence Length = 156127 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ttagctgatgaattggggga 176 |||||||||||||||||||| Sbjct: 6703 ttagctgatgaattggggga 6722
>gb|AC107667.12| Mus musculus chromosome 3, clone RP23-187C2, complete sequence Length = 229632 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 202478 tttctttctctccctccctctctc 202455
>gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987-SK65D3, complete sequence Length = 192730 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 agaacttctcaaaggagaagaaga 367 ||||||||| |||||||||||||| Sbjct: 158372 agaacttctaaaaggagaagaaga 158349
>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence Length = 168858 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 111048 ttctttctcttcctccctctctcc 111071
>gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome 14, complete sequence Length = 159361 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 51724 tctttctctgcctccctctc 51743
>gb|AC129607.3| Mus musculus BAC clone RP23-133N3 from 5, complete sequence Length = 186120 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tctctgcctccctctctcct 29 |||||||||||||||||||| Sbjct: 116224 tctctgcctccctctctcct 116205
>gb|AC124175.2| Mus musculus BAC clone RP23-183N18 from 1, complete sequence Length = 227946 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 cttctcaaaggagaagaagagaga 371 ||||||||||||||||| |||||| Sbjct: 82449 cttctcaaaggagaagaggagaga 82472
>gb|AC121783.2| Mus musculus BAC clone RP23-370I9 from 18, complete sequence Length = 184366 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaaggagaagaagagagaaa 373 |||||||||||||||||||| Sbjct: 116226 aaaggagaagaagagagaaa 116207
>ref|XM_849818.1| PREDICTED: Canis familiaris similar to Hepatoma-derived growth factor (HDGF) (High-mobility group protein 1-like 2) (HMG-1L2) (LOC612089), mRNA Length = 1993 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 tctctgcctccctctctcctgtct 33 ||||||||||||| |||||||||| Sbjct: 1859 tctctgcctccctgtctcctgtct 1882
>gb|AC146562.17| Medicago truncatula clone mth2-14d10, complete sequence Length = 118505 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 109501 aaggagaagaagagagaaat 109482
>gb|AC152405.15| Medicago truncatula clone mth2-49f2, complete sequence Length = 126818 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 42700 aaggagaagaagagagaaat 42681 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 36196 aaggagaagaagagagaaat 36177
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcgccgccgccgccacagc 64 |||||||||||||||||||| Sbjct: 4455094 cgcgccgccgccgccacagc 4455113 Score = 40.1 bits (20), Expect = 5.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 130 gtcaaatcattgaa-gtctggagccatg 156 |||||||||||||| ||||||||||||| Sbjct: 2830773 gtcaaatcattgaacgtctggagccatg 2830746
>emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chromosome 1 Contains a novel gene, complete sequence Length = 150424 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ctctgcctccctctctcctg 30 |||||||||||||||||||| Sbjct: 24439 ctctgcctccctctctcctg 24420
>emb|AL391221.15| Human DNA sequence from clone RP11-771D21 on chromosome 6 Contains the 5' end of the PKHD1 gene for polycystic kidney and hepatic disease 1 (autosomal recessive) (TIG multiple domains-1, FCYT, ARPKD), a novel gene and the IL17 gene for interleukin 17 (cytotoxic T-lymphocyte-associated serine esterase 8) (CTLA8), complete sequence Length = 152546 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 cactttctttctctgcctccctctctcc 28 |||| ||| ||||||||||||||||||| Sbjct: 130638 cactctctctctctgcctccctctctcc 130665
>emb|AL358013.19| Human DNA sequence from clone RP11-420G9 on chromosome 1 Contains the 5' end of the KIF1B gene for kinesin family member 1B and a CpG island, complete sequence Length = 171612 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 77959 tttctttctcttcctccctctctc 77982
>emb|AL353756.5| Human DNA sequence from clone RP11-415D9 on chromosome 9, complete sequence Length = 146155 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 115942 tctttctctgcctccctctc 115961
>emb|AL138741.13| Human DNA sequence from clone RP3-516D24 on chromosome 6, complete sequence Length = 67372 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 aaaggagaagaagagagaaa 373 |||||||||||||||||||| Sbjct: 55487 aaaggagaagaagagagaaa 55506
>emb|AL135924.11| Human DNA sequence from clone RP11-63P12 on chromosome 9q21.11-21.33 Contains the ZNF216 gene for zinc finger protein 216, a novel gene (FLJ37891), an (NM23B) expressed in non-metastatic cells 2 (NME2) pseudogene, a novel gene, the 3' end of the GDA gene for guanine deaminase and a CpG island, complete sequence Length = 162985 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 26520 tttctttctctccctccctctctc 26497
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 83604 ttctttctctccctccctctctcc 83581
>gb|AC163356.2| Mus musculus BAC clone RP23-13A21 from chromosome 6, complete sequence Length = 212612 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 tctcaaaggagaagaagagagaaa 373 ||||| |||||||||||||||||| Sbjct: 122911 tctcagaggagaagaagagagaaa 122934
>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1) pseudogene and a CpG island, complete sequence Length = 197265 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 |||||||||| ||||||||||||| Sbjct: 157253 tctttctctgtctccctctctcct 157276
>gb|AE014177.1| Mus musculus piebald deletion region section 5 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctctcct 29 ||||||||| |||||||||||||| Sbjct: 128264 tctttctcttcctccctctctcct 128241
>gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, complete sequence Length = 95105 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 13243 ttctttctctccctccctctctcc 13220
>gb|AC151956.5| Medicago truncatula clone mth2-52p17, complete sequence Length = 120704 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 71611 aaggagaagaagagagaaat 71592 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 65424 aaggagaagaagagagaaat 65405
>gb|AC150647.13| Medicago truncatula clone mth2-65p21, complete sequence Length = 105458 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 6231 aaggagaagaagagagaaat 6212 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 2449 aaggagaagaagagagaaat 2430
>gb|AC055874.8| Homo sapiens chromosome 15, clone RP11-489D6, complete sequence Length = 180647 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctct 26 ||||||||||||||||| |||||| Sbjct: 29127 ctttctttctctgcctctctctct 29150
>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence Length = 138838 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 5036 aaggagaagaagagagaaat 5017
>gb|AC144724.9| Medicago truncatula clone mth2-7g10, complete sequence Length = 106731 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 aaggagaagaagagagaaat 374 |||||||||||||||||||| Sbjct: 4087 aaggagaagaagagagaaat 4106
>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold Length = 527158 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 417813 tttctttctcttcctccctctctc 417790
>gb|AC067793.9| Homo sapiens chromosome 15, clone RP11-552D14, complete sequence Length = 189722 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctct 26 ||||||||||||||||| |||||| Sbjct: 182540 ctttctttctctgcctctctctct 182563
>gb|AC114485.2| Homo sapiens chromosome 1 clone RP11-202K23, complete sequence Length = 140621 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tctctgcctccctctctcct 29 |||||||||||||||||||| Sbjct: 45299 tctctgcctccctctctcct 45318
>gb|AC022021.10| Homo sapiens chromosome 10 clone RP11-351M16, complete sequence Length = 190202 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tctctgcctccctctctcct 29 |||||||||||||||||||| Sbjct: 69924 tctctgcctccctctctcct 69905
>gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, complete sequence Length = 174287 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 ||||||||| |||||||||||||| Sbjct: 174128 tctttctctccctccctctctcct 174151
>gb|AF217451.1|AF217451 Homo sapiens high-mobility group phosphoprotein isoform I-C (HMGIC) gene, intron 4, complete sequence Length = 11839 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 agagagaaatgaaaagtgaa 384 |||||||||||||||||||| Sbjct: 3228 agagagaaatgaaaagtgaa 3247
>gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, complete sequence Length = 194023 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctctcct 29 ||||||||| |||||||||||||| Sbjct: 94524 tctttctctccctccctctctcct 94501
>gb|AC155273.3| Mus musculus BAC clone RP23-36K2 from chromosome 12, complete sequence Length = 198927 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 119335 tttctttctctccctccctctctc 119312
>dbj|AK166963.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0025L02 product:hypothetical protein, full insert sequence Length = 3665 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 3558 tctttctctgcctccctctc 3577
>gb|AC010649.8| Homo sapiens chromosome 19 clone LLNLR-304C3, complete sequence Length = 37492 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 29993 tttctttctcttcctccctctctc 30016
>gb|AC159987.5| Mus musculus 10 BAC RP23-475N14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 172772 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctctcct 29 ||||||||| |||||||||||||| Sbjct: 165924 tctttctctccctccctctctcct 165947
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttcatcgcgccgccgccgcc 59 |||||||||||||||||||| Sbjct: 20789847 ttcatcgcgccgccgccgcc 20789828
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 6866755 cgccgccgccgccacagcac 6866774
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gaagaagagagaaatgaaaa 379 |||||||||||||||||||| Sbjct: 26811699 gaagaagagagaaatgaaaa 26811718 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcgccgccgccgccacagc 64 |||||||||||||||||||| Sbjct: 15338447 cgcgccgccgccgccacagc 15338466
>gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, complete sequence Length = 149842 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 agaacttctcaaaggagaagaaga 367 ||||||||| |||||||||||||| Sbjct: 7373 agaacttctaaaaggagaagaaga 7350
>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I, complete sequence Length = 133843 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 agaagaagagagaaatgaaa 378 |||||||||||||||||||| Sbjct: 98786 agaagaagagagaaatgaaa 98767
>gb|AC007279.4| Homo sapiens BAC clone RP11-309N8 from 2, complete sequence Length = 138270 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 aaaggagaagaagagagaaatgaa 377 ||||||||| |||||||||||||| Sbjct: 52788 aaaggagaaaaagagagaaatgaa 52765
>gb|AC069303.6| Homo sapiens BAC clone RP11-332N21 from 2, complete sequence Length = 162968 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 aaatgaaaagtgaaccattt 390 |||||||||||||||||||| Sbjct: 117930 aaatgaaaagtgaaccattt 117911
>gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, complete sequence Length = 215485 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ctttctttctctgcctccctctct 26 ||||||||||||| |||||||||| Sbjct: 194552 ctttctttctctgtctccctctct 194529
>gb|AC004803.11| Homo sapiens 12 BAC RP11-359B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154369 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 112097 cgccgccgccgccacagcac 112078
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 2880844 cgccgccgccgccacagcac 2880863 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 489277 cgccgccgccgccacagcac 489296
>gb|AC103682.4| Homo sapiens chromosome 11, clone CTD-2604L9, complete sequence Length = 57561 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctct 26 ||||||||||||| |||||||||| Sbjct: 50687 ctttctttctctgtctccctctct 50710
>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence Length = 199782 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 144183 ttctttctctccctccctctctcc 144160
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516F12 Length = 146364 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gaagaagagagaaatgaaaa 379 |||||||||||||||||||| Sbjct: 77752 gaagaagagagaaatgaaaa 77771
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078K05 Length = 162901 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcgccgccgccgccacagc 64 |||||||||||||||||||| Sbjct: 9229 cgcgccgccgccgccacagc 9248
>dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04 Length = 158792 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgcgccgccgccgccacagc 64 |||||||||||||||||||| Sbjct: 149568 cgcgccgccgccgccacagc 149587
>emb|AL844480.29| Mouse DNA sequence from clone RP23-190B10 on chromosome 4, complete sequence Length = 175199 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ttctttctctgcctccctctctcc 28 ||||||||||||||| |||||||| Sbjct: 117145 ttctttctctgcctctctctctcc 117168
>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1124_B05 Length = 109917 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttcatcgcgccgccgccgcc 59 |||||||||||||||||||| Sbjct: 20980 ttcatcgcgccgccgccgcc 20961
>ref|XM_321201.2| Anopheles gambiae str. PEST ENSANGP00000020136 (ENSANGG00000017647), partial mRNA Length = 1212 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 gccgccgccgccacagcact 67 |||||||||||||||||||| Sbjct: 619 gccgccgccgccacagcact 638
>dbj|AK101296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033H23, full insert sequence Length = 2777 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cgcgccgccgccgccacagc 64 |||||||||||||||||||| Sbjct: 181 cgcgccgccgccgccacagc 162
>gb|AC006975.2|AC006975 Homo sapiens PAC clone RP5-1026B21 from X, complete sequence Length = 146410 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 133082 tctttctctgcctccctctc 133063
>gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, complete sequence Length = 120685 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 5805 tttctttctctccctccctctctc 5782
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gatggcgaagacgatgatcc 296 |||||||||||||||||||| Sbjct: 3184490 gatggcgaagacgatgatcc 3184509
>dbj|AK064881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J24, full insert sequence Length = 1526 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttcatcgcgccgccgccgcc 59 |||||||||||||||||||| Sbjct: 69 ttcatcgcgccgccgccgcc 50
>emb|BX890559.9| Zebrafish DNA sequence from clone DKEY-52J6 in linkage group 20, complete sequence Length = 145859 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 agaagaagagagaaatgaaa 378 |||||||||||||||||||| Sbjct: 76921 agaagaagagagaaatgaaa 76940
>gb|AC156277.6| Mus musculus 6 BAC RP24-309B5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152539 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 cctctctcctgtctgtccat 39 |||||||||||||||||||| Sbjct: 90455 cctctctcctgtctgtccat 90474
>gb|AC090673.5| Homo sapiens 12 BAC RP11-366L20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178755 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 agagagaaatgaaaagtgaa 384 |||||||||||||||||||| Sbjct: 101914 agagagaaatgaaaagtgaa 101933
>dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_B03 Length = 108992 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 23010 cgccgccgccgccacagcac 23029
>emb|AL137779.6|CNS01DWM Human chromosome 14 DNA sequence BAC C-2017C7 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 189116 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tctttctctgcctccctctctcct 29 ||||||||| |||||||||||||| Sbjct: 96045 tctttctcttcctccctctctcct 96022
>dbj|AP000623.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-71P3, complete sequence Length = 121627 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaaggagaagaagagagaaa 373 |||||||||||||||||||| Sbjct: 115572 aaaggagaagaagagagaaa 115553
>emb|AL929095.13| Mouse DNA sequence from clone RP24-576M16 on chromosome 2, complete sequence Length = 135934 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ggagaagaagagagaaatga 376 |||||||||||||||||||| Sbjct: 39225 ggagaagaagagagaaatga 39206
>emb|BX005042.5| Zebrafish DNA sequence from clone CH211-119F9 in linkage group 2, complete sequence Length = 173926 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 agaagaagagagaaatgaaa 378 |||||||||||||||||||| Sbjct: 170641 agaagaagagagaaatgaaa 170660
>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete sequence Length = 225179 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tttctttctctgcctccctctctc 27 ||||||||||| |||||||||||| Sbjct: 95025 tttctttctctccctccctctctc 95048
>dbj|D85624.1|CNASA Citrullus lanatus serine acetyltransferase (Sat) DNA, complete cds Length = 5729 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gagaagaagagagaaatgaa 377 |||||||||||||||||||| Sbjct: 1351 gagaagaagagagaaatgaa 1332
>emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i22, COMPLETE SEQUENCE Length = 111922 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 aagaagagagaaatgaaaag 380 |||||||||||||||||||| Sbjct: 57500 aagaagagagaaatgaaaag 57519
>gb|U97662.1|CRU97662 Chlamydomonas reinhardtii phosphatidylinositol 3-kinase mRNA, partial cds Length = 2200 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgccgccgccacagcac 66 |||||||||||||||||||| Sbjct: 995 cgccgccgccgccacagcac 1014
>gb|AC139158.3| Mus musculus BAC clone RP24-77I7 from 8, complete sequence Length = 203921 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tctttctctgcctccctctc 25 |||||||||||||||||||| Sbjct: 142518 tctttctctgcctccctctc 142537
>gb|AC148326.2| Mus musculus BAC clone RP24-377D18 from 6, complete sequence Length = 177503 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 tctcaaaggagaagaagagagaaa 373 ||||| |||||||||||||||||| Sbjct: 148068 tctcagaggagaagaagagagaaa 148045
>gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complete sequence Length = 199358 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 94578 ttctttctctccctccctctctcc 94555
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence Length = 215490 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 203988 ttctttctctccctccctctctcc 203965
>emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chromosome 4, complete sequence Length = 236166 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ctttctttctctgcctccctctct 26 |||||||||||| ||||||||||| Sbjct: 25485 ctttctttctctccctccctctct 25508
>dbj|AB209853.1| Homo sapiens mRNA for high mobility group AT-hook 2 variant protein Length = 8095 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 agagagaaatgaaaagtgaa 384 |||||||||||||||||||| Sbjct: 3882 agagagaaatgaaaagtgaa 3901
>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence Length = 204569 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 5245 ttctttctctccctccctctctcc 5222
>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete sequence Length = 197402 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttctttctctgcctccctctctcc 28 |||||||||| ||||||||||||| Sbjct: 50891 ttctttctctccctccctctctcc 50868
>emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chromosome 2, complete sequence Length = 226854 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ggatgaggatcagagtgtgt 193 |||||||||||||||||||| Sbjct: 17045 ggatgaggatcagagtgtgt 17026
>dbj|AB006530.1| Citrullus lanatus Sat gene for serine acetyltransferase, complete cds and 5'-flanking region Length = 7344 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gagaagaagagagaaatgaa 377 |||||||||||||||||||| Sbjct: 2966 gagaagaagagagaaatgaa 2947
>dbj|AP001179.4| Homo sapiens genomic DNA, chromosome 11q14, clone:RP11-816L8, complete sequence Length = 221198 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaaggagaagaagagagaaa 373 |||||||||||||||||||| Sbjct: 32848 aaaggagaagaagagagaaa 32829 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,792,900 Number of Sequences: 3902068 Number of extensions: 5792900 Number of successful extensions: 186077 Number of sequences better than 10.0: 172 Number of HSP's better than 10.0 without gapping: 174 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 184328 Number of HSP's gapped (non-prelim): 1749 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
