>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 25/44 (56%), Positives = 34/44 (77%)
 Frame = +1

Query: 223 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKF 354
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKF
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKF 98

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 25/44 (56%), Positives = 34/44 (77%)
 Frame = +1

Query: 223 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKF 354
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKF
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKF 98

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 20/43 (46%), Positives = 32/43 (74%)
 Frame = +1

Query: 226 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKF 354
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKF
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKF 90

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +1

Query: 226 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKF 354
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKF
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKF 99

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = +1

Query: 250 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKF 354
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKF
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKF 82

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +1

Query: 226 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKF 354
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKF
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKF 91

>YACF_SALTY (P67693) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 262 PGVQRLALESMRQEIRSATSSMTSVPK 342
           PGV +  +E++RQ+++SA S + S P+
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAPR 107

>YACF_SALTI (P67694) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 262 PGVQRLALESMRQEIRSATSSMTSVPK 342
           PGV +  +E++RQ+++SA S + S P+
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAPR 107

>YACF_SALPA (Q5PDD7) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 262 PGVQRLALESMRQEIRSATSSMTSVPK 342
           PGV +  +E++RQ+++SA S + S P+
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAPR 107

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 229 ELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPK 342
           ELY+  +++ +P +  +  +S++QE      S TS+PK
Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPK 394

>SALA_DROSI (P21749) Protein spalt-accessory precursor|
          Length = 139

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 66 HGWRGGFGSATALAGWLGFGGR 1
          +G +GGFG    L G  GFGG+
Sbjct: 25 YGGQGGFGGFGGLGGQAGFGGQ 46

>SALA_DROOR (P21748) Protein spalt-accessory precursor|
          Length = 142

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 66 HGWRGGFGSATALAGWLGFGGR 1
          +G +GGFG    L G  GFGG+
Sbjct: 28 YGGQGGFGGYGGLGGQAGFGGQ 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,707,299
Number of Sequences: 219361
Number of extensions: 231053
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)