ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50c07 |
|---|---|
| Clone Library Name | barley_pub |
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 52.0 bits (123), Expect = 8e-07 Identities = 33/105 (31%), Positives = 48/105 (45%) Frame = +1 Query: 157 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFALTLLGLASSPRHDLQAR 336 MEV L LAG+ QTLS D + + LL L + D+ R Sbjct: 1 MEVTEANLQLLAGYLQQTLSADPNVRRPAEKLLESTELQQNYPILLLNLIDKAQMDMTTR 60 Query: 337 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLL 471 +A ++ FKN ++R W D+D D + +D IKT I+ L+L Sbjct: 61 VAGAIAFKNYIKRNWAAHL-DSDGPDRIHESDRNTIKTLIVTLML 104
>CSE1_YEAST (P33307) Importin alpha re-exporter (Chromosome segregation protein| CSE1) Length = 960 Score = 45.8 bits (107), Expect = 5e-05 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Frame = +1 Query: 277 GFALTLLGLASSPRHDLQARLAASVHFKNLLRRRWPKPADDADDGDH-LPPNDCVIIKTH 453 GF LTLL + +S L RLA ++ FKN ++R+W ++G+H LP N+ +IK Sbjct: 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD-----ENGNHLLPANNVELIKKE 89 Query: 454 ILQLLL 471 I+ L++ Sbjct: 90 IVPLMI 95
>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 972 Score = 43.9 bits (102), Expect = 2e-04 Identities = 36/105 (34%), Positives = 48/105 (45%) Frame = +1 Query: 157 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFALTLLGLASSPRHDLQAR 336 ME E L L+ F TLSP + L +L L + P D Q R Sbjct: 1 MEWNRETLVFLSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTR 60 Query: 337 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLL 471 AA+V+FKN LR RW PA D+ + ++ IKT I+ L+L Sbjct: 61 HAAAVNFKNHLRSRW-HPAGDSGISP-IVDSEKEQIKTLIVSLML 103
>CSE1_SCHPO (O13671) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 967 Score = 42.0 bits (97), Expect = 8e-04 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Frame = +1 Query: 178 LDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFALTLLGLASSPRHDLQARLAASVHF 357 +D + A+TL+P + FAL LL + + D+ +LAAS++F Sbjct: 1 MDDIPTLLARTLNPTTSKSAEEALKVWELQDS-SFALKLLNIVAEDTVDINIKLAASLYF 59 Query: 358 KNLLRRRWPKPADDADDGDHLPPNDCV--IIKTHILQLLL 471 KN +++ W D+++G + +D V +IK I+ L+L Sbjct: 60 KNYIKKHW-----DSEEGASIRISDEVAELIKREIINLML 94
>CSE1_MOUSE (Q9ERK4) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 38.5 bits (88), Expect = 0.009 Identities = 29/105 (27%), Positives = 46/105 (43%) Frame = +1 Query: 157 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFALTLLGLASSPRHDLQAR 336 ME+ L TL + +TL PD + L LL L + ++ + Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNV-IK 59 Query: 337 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLL 471 + ASV FKN ++R W D+ + + D V IK +I+ L+L Sbjct: 60 VCASVTFKNYIKRNWRIVEDEP---NKICEADRVAIKANIVHLML 101
>CSE1_HUMAN (P55060) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 38.5 bits (88), Expect = 0.009 Identities = 29/105 (27%), Positives = 46/105 (43%) Frame = +1 Query: 157 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFALTLLGLASSPRHDLQAR 336 ME+ L TL + +TL PD + L LL L + ++ + Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNV-IK 59 Query: 337 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLL 471 + ASV FKN ++R W D+ + + D V IK +I+ L+L Sbjct: 60 VCASVTFKNYIKRNWRIVEDEP---NKICEADRVAIKANIVHLML 101
>CSE1_PAGMA (Q9PTU3) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 34.7 bits (78), Expect = 0.13 Identities = 27/105 (25%), Positives = 44/105 (41%) Frame = +1 Query: 157 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFALTLLGLASSPRHDLQAR 336 ME+ L TL + + L PD + L LL L + ++ R Sbjct: 1 MELNDANLQTLTEFLRKALDPDPTVRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNV-IR 59 Query: 337 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLL 471 + A+V FKN ++R W D+ + + D IK +I+ L+L Sbjct: 60 VCAAVTFKNYIKRNWRVIEDEP---NKVSDPDRTAIKANIVNLML 101
>IPO7_MOUSE (Q9EPL8) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 32.7 bits (73), Expect = 0.48 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +1 Query: 280 FALTLLGLASSPRHDLQARLAASVHFKNLLRRRWPKPADDADDGD----HLPPNDCVIIK 447 F TLL + S + DL R A ++ KN++ + WP +A GD +P D I+ Sbjct: 35 FVSTLLQITMSEQLDLPVRQAGVIYLKNMITQYWPD--REATPGDIAPYTIPEEDRHCIR 92 Query: 448 THILQLLL 471 +I++ ++ Sbjct: 93 ENIVEAII 100
>NMD5_YEAST (P46970) Nonsense-mediated mRNA decay protein 5| Length = 1048 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Frame = +1 Query: 199 FAQTLSPDXXXXXXXXXXXXXXXXTPGFALTLLGLASSPRHDLQARLAASVHFKNLLRRR 378 FA TL + PGF L + ++ +L+AS++FKN + Sbjct: 10 FACTLDHNAAVRTNAETHLKNASKVPGFLGACLDIIAADEVPENIKLSASLYFKNKITYG 69 Query: 379 WPKPADDADD---GDHLPPNDCVIIKTHILQLLL 471 W A + H+ P++ ++K +++ ++ Sbjct: 70 WSAGARQGSNELLDSHVDPDEKPVVKDMLIKTMV 103
>IPO7_HUMAN (O95373) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +1 Query: 280 FALTLLGLASSPRHDLQARLAASVHFKNLLRRRWPKPADDADDGD----HLPPNDCVIIK 447 F TLL + S + DL R A ++ KN++ + WP + GD +P D I+ Sbjct: 35 FVSTLLQITMSEQLDLPVRQAGVIYLKNMITQYWPD--RETAPGDISPYTIPEEDRHCIR 92 Query: 448 THILQLLL 471 +I++ ++ Sbjct: 93 ENIVEAII 100
>IPO8_HUMAN (O15397) Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)| Length = 1037 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = +1 Query: 280 FALTLLGLASSPRHDLQARLAASVHFKNLLRRRWP---KPADDADDGDHLPPNDCVIIKT 450 FA +LL + S + R AA+++ KN++ + WP P +A ++ ND I+ Sbjct: 35 FAPSLLRIIVSDHVEFPVRQAAAIYLKNMVTQYWPDREPPPGEAIFPFNIHENDRQRIRD 94 Query: 451 HILQ 462 +I++ Sbjct: 95 NIVE 98
>GUN3_BACSU (P23549) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -3 Query: 416 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSVSAKPG 273 W S AS + G+ + R +LK+ ++ +W +W + + S + KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>GUN2_BACSU (P10475) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -3 Query: 416 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSVSAKPG 273 W S AS + G+ + R +LK+ ++ +W +W + + S + KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>ATKB_XANCP (Q8PCM1) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 682 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = -3 Query: 461 WRMCVLMMTQSLGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSVSA 282 W + ++ L G ++ + A + G GQ R + ARR + G E R + Sbjct: 70 WAVTAILFVTVLFGNFAEAIAEARGRGQAASLRRARKDLVARRVETALGGRETRVPAAEL 129 Query: 281 KPG 273 +PG Sbjct: 130 RPG 132
>ATKB_XANAC (Q8PPC9) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 682 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = -3 Query: 461 WRMCVLMMTQSLGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSVSA 282 W + ++ L G ++ + A + G GQ R + ARR + G E R + Sbjct: 70 WAVTAILFVTVLFGNFAEAIAEARGRGQAASLRRARKDLVARRVETALGGRETRVPAAEL 129 Query: 281 KPG 273 +PG Sbjct: 130 RPG 132 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,305,744 Number of Sequences: 219361 Number of extensions: 428182 Number of successful extensions: 1805 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1765 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1804 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
