ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50c05 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 87.8 bits (216), Expect = 1e-17 Identities = 47/127 (37%), Positives = 73/127 (57%) Frame = +2 Query: 74 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 253 M+ + L SPD N+R AE ++ + +++ L+ EL+ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 254 LKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 433 LKN++ A++ ARK+ Q W SL IK Q+K L TLGSS A Q+++Q++A IA+ Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAY 120 Query: 434 EIPRREW 454 E+ +W Sbjct: 121 ELATNQW 127
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 72.0 bits (175), Expect = 7e-13 Identities = 44/127 (34%), Positives = 71/127 (55%) Frame = +2 Query: 74 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 253 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 254 LKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 433 +KNSL +KD K Q+W+++D + + ++K +L TLG+ ++SQ +A IA Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRPSSASQCVAGIACA 119 Query: 434 EIPRREW 454 EIP +W Sbjct: 120 EIPVNQW 126
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 71.6 bits (174), Expect = 9e-13 Identities = 44/127 (34%), Positives = 71/127 (55%) Frame = +2 Query: 74 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 253 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 254 LKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 433 +KNSL +KD K Q+W+++D + + ++K +L TLG+ ++SQ +A IA Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRPSSASQCVAGIACA 119 Query: 434 EIPRREW 454 EIP +W Sbjct: 120 EIPVSQW 126
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 65.1 bits (157), Expect = 8e-11 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Frame = +2 Query: 107 SPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSA 286 SPD N+R +E +K+ N F S L ++ E R LA + LKN L +KDS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 287 RKVLLIQQWVS-LDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEIPRREW 454 + Q+W++ + K+QIK + L L S ++Q+IA IA IE+P W Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW 132
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 62.0 bits (149), Expect = 7e-10 Identities = 41/127 (32%), Positives = 60/127 (47%) Frame = +2 Query: 74 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 253 M + IL SPD N +A+ ++Q NLP FL +LS L N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 254 LKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 433 LKN L +KD +W I+ IK ++L LG+ ++Q +A +A I Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTE-NTRPSCAAQCVAYVAVI 125 Query: 434 EIPRREW 454 E+P W Sbjct: 126 ELPINRW 132
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 61.2 bits (147), Expect = 1e-09 Identities = 41/127 (32%), Positives = 69/127 (54%) Frame = +2 Query: 74 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 253 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 254 LKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 433 ++ L +KD K Q+W+++D + + ++K +L TLG+ ++SQ +A IA Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRPSSASQCVAGIACA 118 Query: 434 EIPRREW 454 EIP +W Sbjct: 119 EIPVSQW 125
>IMB4_SCHPO (O60100) Probable importin beta-4 subunit (Karyopherin beta-4| subunit) (Importin 123) Length = 1067 Score = 44.7 bits (104), Expect = 1e-04 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Frame = +2 Query: 74 MDITQILLAAQSPDGN-LRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGI 250 +++TQ+L + +PD + A A ++ ++ P LLSL + E P + R+LA I Sbjct: 7 LELTQLLFQSIAPDTTQITEATRALETKYLKE--PGSLLSLFHIMGTCENP-QVRQLAAI 63 Query: 251 ILKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLL-ITLGSSVGDARQTSSQVIAKIA 427 ARK L + W S+D +++QI+ +LL ITL R +VIA +A Sbjct: 64 ----------EARK-LCHKYWSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRVIAALA 112 Query: 428 SIEIPRREW 454 +++P +W Sbjct: 113 KLDLPEGKW 121
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 43.1 bits (100), Expect = 3e-04 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Frame = +2 Query: 71 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 247 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 248 IILKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 427 +ILKN++ A + + + + IK L +G S R T +I IA Sbjct: 70 LILKNNVKA-----------HFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 118 Query: 428 S 430 S Sbjct: 119 S 119
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 43.1 bits (100), Expect = 3e-04 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Frame = +2 Query: 71 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 247 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 248 IILKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 427 +ILKN++ A + + + + IK L +G S R T +I IA Sbjct: 70 LILKNNVKA-----------HFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 118 Query: 428 S 430 S Sbjct: 119 S 119
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 38.9 bits (89), Expect = 0.006 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +2 Query: 71 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 247 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 248 IILKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 427 +ILKN++ A + S + IK+ L +G + R T +I IA Sbjct: 68 LILKNNVKA-----------HYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIA 116 Query: 428 S 430 S Sbjct: 117 S 117
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 38.9 bits (89), Expect = 0.006 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +2 Query: 71 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 247 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 248 IILKNSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 427 +ILKN++ A + S + IK+ L +G + R T +I IA Sbjct: 68 LILKNNVKA-----------HYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIA 116 Query: 428 S 430 S Sbjct: 117 S 117
>IMB4_YEAST (P40069) Importin beta-4 subunit (Karyopherin beta-4 subunit)| (Ran-binding protein YRB4) Length = 1113 Score = 34.3 bits (77), Expect = 0.16 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Frame = +2 Query: 251 ILKNSLD------AKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGD-ARQTSSQ 409 IL+N D A ARK L+ + W ++D S ++ IK SLL T S + R ++++ Sbjct: 46 ILQNGSDDSLKQLAGVEARK-LVSKHWNAIDESTRASIKTSLLQTAFSEPKENVRHSNAR 104 Query: 410 VIAKIASIEIPRREW 454 VIA I + E+ +W Sbjct: 105 VIASIGTEELDGNKW 119
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 33.9 bits (76), Expect = 0.20 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 19/95 (20%) Frame = +2 Query: 74 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 253 MDI ++++ AQS D + R AE + Q+ + + +L+ E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 254 LKN-------------------SLDAKDSARKVLL 301 L+ +D KD R+VLL Sbjct: 61 LRKLITMYWSPGFESYRSTSNVEIDVKDFIREVLL 95
>IPO11_MOUSE (Q8K2V6) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 33.1 bits (74), Expect = 0.35 Identities = 31/123 (25%), Positives = 53/123 (43%) Frame = +2 Query: 80 ITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILK 259 + Q+L A S D + AE +KQ++ Q P F L +N R LA + K Sbjct: 10 VLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLAVLYFK 67 Query: 260 NSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEI 439 + +D R+V +L KS ++ L+ + + +IAK+A ++ Sbjct: 68 HGIDRY--WRRVAPH----ALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDC 121 Query: 440 PRR 448 PR+ Sbjct: 122 PRQ 124
>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 32.0 bits (71), Expect = 0.78 Identities = 30/123 (24%), Positives = 53/123 (43%) Frame = +2 Query: 80 ITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILK 259 + Q+L A S D + AE +KQ++ Q P F L +N R LA + K Sbjct: 10 VLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLAVLYFK 67 Query: 260 NSLDAKDSARKVLLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEI 439 + +D R+V +L K+ ++ L+ + + +IAK+A ++ Sbjct: 68 HGIDRY--WRRVAPH----ALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAKVARLDC 121 Query: 440 PRR 448 PR+ Sbjct: 122 PRQ 124
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.78 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -1 Query: 212 HSITPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 93 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>IMB_XENLA (P52297) Importin beta subunit (Karyopherin beta subunit) (P97)| (Importin 90) (Fragments) Length = 260 Score = 30.4 bits (67), Expect = 2.3 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Frame = +2 Query: 77 DITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIIL 256 ++ IL SPD E Q +NLP F++ LS L+N P S+ Sbjct: 1 ELVTILEKTVSPDRRXLKFLE----QAAVENLPTFVVELSKVLAN---PANSQ------- 46 Query: 257 KNSLDAKDSARKVLLIQQWVSLDHSIKSQI-KESLLITLGSSVGDARQTSSQV 412 ARK Q+W+++D + + +I KES L + D + S+ V Sbjct: 47 --------VARKAQYQQRWLAIDANARGEIKKESXLEAIDYIXQDIEEPSNNV 91
>DTD_AQUAE (O66742) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 148 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +2 Query: 305 QQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEI 439 + WV +D + I E L + LG GD + +++ KI ++ I Sbjct: 10 KSWVEVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRI 54
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 29.3 bits (64), Expect = 5.0 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Frame = +2 Query: 143 NIKQFQEQNLPNFLLSLSVELSN-----DERPPESRRLAGIILKNSLDAKDSARKVLLIQ 307 ++ + ++NL VE+ N DERP E+ R I K KD+ K LLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 308 QWVSLDHSIKSQ-IKESL---LITLGSSVGD-ARQTSSQVIAK 421 + + IKE L +T+ D A T S+ + K Sbjct: 259 HLKEFSEIVSEELIKERLYCRTVTVKIKTADFAVHTKSKTVDK 301
>KPYK_TRYBO (Q27788) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 498 Score = 28.9 bits (63), Expect = 6.6 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -2 Query: 136 CC*AKVTIWRLSS*QNLSDIHDCCTCPEERIC 41 CC +VT+W +++ + + ++ PEE IC Sbjct: 350 CCETQVTMWNMAAFEAIKNLQSFPLIPEEAIC 381
>STRH_STRPN (P49610) Beta-N-acetylhexosaminidase precursor (EC 3.2.1.52)| Length = 1312 Score = 28.9 bits (63), Expect = 6.6 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Frame = +2 Query: 8 QASERARKHPPADSFFWAGATVMDITQILLAAQSPDGNLRSAAEANIKQF---QEQNLPN 178 +++E+A P D + +V + + A +S D NL A + I Q ++ + N Sbjct: 550 ESAEQALNEVPKDLNRYTAESVTAVKEAEKAIRSLDSNLSRAQQDTIDQAIAKLQETVNN 609 Query: 179 FLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSARKVLLIQQ 310 L+L+ E +E E++R + KN + + D+ RK + Q Sbjct: 610 --LTLTPEAQKEE---EAKREVEKLAKNKVISIDAGRKYFTLNQ 648
>HEATR_HUMAN (Q9H583) HEAT repeat-containing protein 1 (Protein BAP28)| Length = 2144 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 329 SIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEIP 442 SI S + SLLI LGS V + R+ + Q + ++ + P Sbjct: 914 SISSPVVTSLLINLGSPVKEVRRAAIQCLQALSGVASP 951 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,829,980 Number of Sequences: 219361 Number of extensions: 1142549 Number of successful extensions: 3357 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3276 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3349 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
