ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like p... 30 3.1
2BCTN5_BOVIN (P19660) Bactenecin-5 precursor (Bac5) (Cathelicidin... 29 5.2
3RS3_SYMTH (Q67JU9) 30S ribosomal protein S3 28 8.9

>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)|
          Length = 1826

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 467  GSVRRXSTGAEAGRPERSWQATVPASTVNL 378
            G VRR STG   G PE    AT+  S  NL
Sbjct: 1772 GPVRRRSTGLRLGAPEARRSATLSGSATNL 1801



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>BCTN5_BOVIN (P19660) Bactenecin-5 precursor (Bac5) (Cathelicidin-2) (PR-42)|
          Length = 176

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 27  RPPIQLTIFSPLHP---PSVLPHFREPLHAPLSP 119
           RPPI+   + P  P   P + P  R P   PL P
Sbjct: 138 RPPIRPPFYPPFRPPIRPPIFPPIRPPFRPPLGP 171



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>RS3_SYMTH (Q67JU9) 30S ribosomal protein S3|
          Length = 267

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 443 GAEAGRPERSWQATVPASTV 384
           GAE  R ER+W+ TVP  T+
Sbjct: 159 GAEIARSERAWEGTVPLHTL 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,486,986
Number of Sequences: 219361
Number of extensions: 443907
Number of successful extensions: 1656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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