>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)|
          Length = 942

 Score =  193 bits (490), Expect = 1e-49
 Identities = 92/111 (82%), Positives = 103/111 (92%)
 Frame = +2

Query: 53  MDSEDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIA 232
           M+ +DF PEGGKLPE KLDARQAQGFISFFKKLP+DPRA+RLFDRRDYYTAHGENATFIA
Sbjct: 1   MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA 60

Query: 233 KAHYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEG 385
           + +YHTM+ALRQLG +SDGI S SVS+AMFETIARN+LL+RTD TLELYEG
Sbjct: 61  RTYYHTMSALRQLGSSSDGILSASVSKAMFETIARNILLERTDCTLELYEG 111

>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)|
          Length = 937

 Score =  161 bits (408), Expect = 3e-40
 Identities = 76/103 (73%), Positives = 89/103 (86%)
 Frame = +2

Query: 77  EGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAHYHTMT 256
           E  KLPELKLDA+QAQGF+SF+K LP D RA+R FDR+DYYTAHGEN+ FIAK +YHT T
Sbjct: 7   EQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTT 66

Query: 257 ALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEG 385
           ALRQLG  S+ +SSVS+SR MFETIAR+LLL+R DHT+ELYEG
Sbjct: 67  ALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEG 109

>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2|
          Length = 937

 Score = 74.7 bits (182), Expect = 5e-14
 Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
 Frame = +2

Query: 92  PELKLDARQAQGFISFFKKLPK-DPRAIRLFDRRDYYTAHGENATFIAKAHYHTMTALRQ 268
           PELK+D     GFI F+K LP+    AIR+FDR D+YTAHG++ATFIA+  Y T + +RQ
Sbjct: 5   PELKVD--DEHGFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62

Query: 269 LG-GNSDGISSVSVSRAMFETIARNLL 346
           LG  +  G+ SV+++  +F    R  L
Sbjct: 63  LGRSDHTGLPSVTMTVTVFRQFLREAL 89

>MSH2_CERAE (Q5XXB5) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 933

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAHYHTMTALRQLG 274
           L+L++    GF+ FF+ +P+ P   +RLFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382
              +  + SV +S+  FE+  ++LLL R  + +E+Y+
Sbjct: 69  PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104

>MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 935

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAHYHTMTALRQLG 274
           L+L+     GF+ FF+ +P+ P   +RLFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382
              S  + SV +S+  FE+  ++LLL R  + +E+Y+
Sbjct: 69  PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104

>MSH2_HUMAN (P43246) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 934

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAHYHTMTALRQLG 274
           L+L++    GF+ FF+ +P+ P   +RLFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382
              +  + SV +S+  FE+  ++LLL R  + +E+Y+
Sbjct: 69  PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104

>MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 934

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAHYHTMTALRQLG 274
           L+LD+    GF+ FF+ +P+ P   +RLFDR D+YTAH E+A   A+  + T   ++ +G
Sbjct: 9   LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68

Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382
              +  + SV +S+  FE+  ++LLL R  + +E+Y+
Sbjct: 69  PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYK 104

>MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 933

 Score = 60.8 bits (146), Expect = 7e-10
 Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAHYHTMTALRQLG 274
           L+L+     GF+ FF+ +P+ P   + LFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382
              +  + +V +S+  FE+  ++LLL R  + +E+Y+
Sbjct: 69  PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYK 104

>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2|
          Length = 982

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 26/71 (36%), Positives = 46/71 (64%)
 Frame = +2

Query: 134 SFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAHYHTMTALRQLGGNSDGISSVSVSR 313
           +F++K+PKD   +R+FDR ++Y A GE+A+F+A+  YHT + L+    N    S  ++S 
Sbjct: 20  NFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKH--HNVSNTSYCNLSP 77

Query: 314 AMFETIARNLL 346
           ++F   A ++L
Sbjct: 78  SLFIKFAEDVL 88

>MSH2_YEAST (P25847) DNA mismatch repair protein MSH2|
          Length = 964

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
 Frame = +2

Query: 92  PELKL-DARQAQGFISFFKKLPKDP-RAIRLFDRRDYYTAHGENATFIAKAHYHTMTALR 265
           PELK  D  + + F   +  LPK P + IRL D+ DYYT  G +A F+A + YHT + L+
Sbjct: 6   PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65

Query: 266 QLGGNSDGISS---------VSVSRAMFETIARNLLLDRTDHTLELYE 382
                 D +++         V+VS  +  T+ +  LLD   + +E+Y+
Sbjct: 66  NC--QLDPVTAKNFHEPTKYVTVSLQVLATLLKLCLLD-LGYKVEIYD 110

>MSH2_DROME (P43248) DNA mismatch repair protein spellchecker 1|
          Length = 917

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = +2

Query: 92  PELKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHG-ENATFIAKAHYHTMTALR 265
           P L +D    + FI F  KL + P   +R FD  D YT HG ++   +AK  Y +   + 
Sbjct: 12  PTLNMDTNARRNFIKFHAKLGEKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIG 71

Query: 266 QL--GGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELY 379
            L      + +  VS+S+  FE   R LLL R ++ +E+Y
Sbjct: 72  ALLPDDKKETLQFVSMSKGNFELAVRELLLVR-NYRVEVY 110

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 214 ECNLYCKGTLSHND-CLKATGR*L*WNLKCQC*QGYV*DHCPQPFVR 351
           EC++   G   H   CL   G     + +CQC QG+   HC  P+VR
Sbjct: 185 ECDI--PGRCQHGGTCLNLPG-----SYRCQCGQGFTGQHCDSPYVR 224

>Y406_METJA (Q57849) Hypothetical sugar kinase MJ0406|
          Length = 302

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +2

Query: 80  GGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAHYHTMTA 259
           GGK+ ++      A  +I   +K P+   +I++   R YY     N          T   
Sbjct: 2   GGKMEKITCVGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAAN----------TAVG 51

Query: 260 LRQLGGNSDGISSV--SVSRAMFETIARNL 343
           +++LG NS+ +S V      + +E   +NL
Sbjct: 52  IKKLGVNSELLSCVGYDFKNSGYERYLKNL 81

>TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Protein|
           matotopetli)
          Length = 814

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 299 HLRFHQSYRPVALRQSLCD-SVPLQ*RLHSHHEQCN 195
           HLRFHQ  +P   ++  CD    ++  L+ H  +C+
Sbjct: 529 HLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCH 564

>SKI3_YEAST (P17883) Superkiller 3 protein|
          Length = 1432

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 104 LDARQAQGFISFFKKLPKDPRAIRLF 181
           LD   A   I +FKK PKDP A+ L+
Sbjct: 297 LDNMDAPLIIKYFKKFPKDPLAMILY 322

>DOPR2_DROME (Q24563) Dopamine receptor 2|
          Length = 539

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 218 HSHHEQCNNPGDQIDEWPEDPSATS*RRR*NPGLASH 108
           HSHH   N+ G      PE+P         N GLA H
Sbjct: 359 HSHHHHHNHGGGTTTSTPEEPDDEPLSALHNNGLARH 395

>CCPR_KLULA (Q6CW24) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 346

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 41  RRGCMDS-EDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGEN 217
           R G +D  ED  PE G+LP+   DA+  + F  F +   +D + + L         H +N
Sbjct: 180 RSGRVDQPEDTTPENGRLPDASKDAKYVRCF--FHRLNFEDRQVVALLGAHALGKTHLKN 237

Query: 218 ATF 226
           + F
Sbjct: 238 SGF 240

>SF04_HUMAN (Q8IWZ8) Splicing factor 4 (RNA-binding protein RBP)|
          Length = 645

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 4   SPSRSPALPPSTPAGLYGQRRLL 72
           +P+ +P+ PPSTP    G+R LL
Sbjct: 105 APTSAPSAPPSTPTPSAGKRSLL 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,429,491
Number of Sequences: 219361
Number of extensions: 958500
Number of successful extensions: 2722
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2710
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)