>gb|AY110865.1| Zea mays CL588_1 mRNA sequence
          Length = 3331

 Score =  198 bits (100), Expect = 9e-48
 Identities = 205/240 (85%)
 Strand = Plus / Plus

                                                                       
Query: 60  gcgaagacttcttgccggaggggggaaagctcccggagcttaagctagatgcgaggcaag 119
           |||| ||||||  ||||||||| || |||||||| ||| | |||||||||||||| ||||
Sbjct: 88  gcgacgacttcacgccggagggcggcaagctccccgagttcaagctagatgcgagacaag 147

                                                                       
Query: 120 cccagggtttcatctccttcttcaagaagttgccgaaggatcctcgggccattcgtctat 179
           | ||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||| |
Sbjct: 148 cgcagggtttcatctccttcttcaagaagctgccgcaggatccccgggccgttcgtctct 207

                                                                       
Query: 180 ttgatcgccgggattattacactgctcatggtgagaatgcaacctttattgcaaaggcac 239
           | |||||| |||||||||||||||| ||||| |||||||| || ||||| |||| | || 
Sbjct: 208 tcgatcgcagggattattacactgcccatggcgagaatgctacgtttatcgcaaggacat 267

                                                                       
Query: 240 actatcacacaatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtg 299
           |||| ||||||||| |||||||| | ||||| ||  | | |||||||||||||| |||||
Sbjct: 268 actaccacacaatgtctgccttacgtcaactaggtagcagctctgatggaatcttaagtg 327

>gb|AC132488.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0522C01,
              complete sequence
          Length = 136120

 Score =  186 bits (94), Expect = 4e-44
 Identities = 172/198 (86%)
 Strand = Plus / Plus

                                                                          
Query: 190    ggattattacactgctcatggtgagaatgcaacctttattgcaaaggcacactatcacac 249
              ||||||||||||||||||||| |||||||| || || ||||||||   | ||||||||||
Sbjct: 117890 ggattattacactgctcatggagagaatgccacattcattgcaaaaatatactatcacac 117949

                                                                          
Query: 250    aatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtgtcagtgttag 309
              |||| |||||||| | ||| | ||  | |||||||||||| |||||||||||||||| ||
Sbjct: 117950 aatgtctgccttacgccaattaggtagcaactctgatggactctcaagtgtcagtgtgag 118009

                                                                          
Query: 310    cagggctatgtttgagaccattgcccgcaaccttttgttagataggacggaccatacact 369
              || | |||||||||||||||| |||||||||||||||||||| ||||| |||| |||| |
Sbjct: 118010 caagactatgtttgagaccatcgcccgcaaccttttgttagagaggacagaccgtacatt 118069

                                
Query: 370    ggagctctatgagggaag 387
              ||| ||||||||||||||
Sbjct: 118070 ggaactctatgagggaag 118087



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                         
Query: 105    tagatgcgaggcaagcccagggtttcatctccttcttcaagaa 147
              |||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 116653 tagatgcgaggcaagcgcagggcttcatctctttcttcaagaa 116695



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 60     gcgaagacttcttgccggaggggggaaagctcccggagcttaagctag 107
              |||| ||||||||||||||||| || |||||||| ||||| |||||||
Sbjct: 116533 gcgacgacttcttgccggagggcggcaagctccccgagctcaagctag 116580

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  186 bits (94), Expect = 4e-44
 Identities = 172/198 (86%)
 Strand = Plus / Plus

                                                                            
Query: 190      ggattattacactgctcatggtgagaatgcaacctttattgcaaaggcacactatcacac 249
                ||||||||||||||||||||| |||||||| || || ||||||||   | ||||||||||
Sbjct: 11090600 ggattattacactgctcatggagagaatgccacattcattgcaaaaatatactatcacac 11090659

                                                                            
Query: 250      aatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtgtcagtgttag 309
                |||| |||||||| | ||| | ||  | |||||||||||| |||||||||||||||| ||
Sbjct: 11090660 aatgtctgccttacgccaattaggtagcaactctgatggactctcaagtgtcagtgtgag 11090719

                                                                            
Query: 310      cagggctatgtttgagaccattgcccgcaaccttttgttagataggacggaccatacact 369
                || | |||||||||||||||| |||||||||||||||||||| ||||| |||| |||| |
Sbjct: 11090720 caagactatgtttgagaccatcgcccgcaaccttttgttagagaggacagaccgtacatt 11090779

                                  
Query: 370      ggagctctatgagggaag 387
                ||| ||||||||||||||
Sbjct: 11090780 ggaactctatgagggaag 11090797



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                           
Query: 105      tagatgcgaggcaagcccagggtttcatctccttcttcaagaa 147
                |||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 11089363 tagatgcgaggcaagcgcagggcttcatctctttcttcaagaa 11089405



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 60       gcgaagacttcttgccggaggggggaaagctcccggagcttaagctag 107
                |||| ||||||||||||||||| || |||||||| ||||| |||||||
Sbjct: 11089243 gcgacgacttcttgccggagggcggcaagctccccgagctcaagctag 11089290

>emb|AJ238785.1|ZMA238785 Zea mays mus1 gene, exons 1-13
          Length = 10376

 Score =  155 bits (78), Expect = 1e-34
 Identities = 168/198 (84%)
 Strand = Plus / Plus

                                                                        
Query: 190  ggattattacactgctcatggtgagaatgcaacctttattgcaaaggcacactatcacac 249
            ||||||||||||||| ||||| |||||||| || ||||| |||| | || |||| |||||
Sbjct: 1673 ggattattacactgcccatggcgagaatgctacgtttatcgcaaggacatactaccacac 1732

                                                                        
Query: 250  aatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtgtcagtgttag 309
            |||| |||||||| | ||||| ||  | | |||||||||||||| ||||| ||| || ||
Sbjct: 1733 aatgtctgccttacgtcaactaggtagcagctctgatggaatcttaagtgccagcgtgag 1792

                                                                        
Query: 310  cagggctatgtttgagaccattgcccgcaaccttttgttagataggacggaccatacact 369
            || |||||||||||||||||||||||||||| ||||||| || ||||| |||  |||| |
Sbjct: 1793 caaggctatgtttgagaccattgcccgcaacattttgttggaaaggactgactgtacatt 1852

                              
Query: 370  ggagctctatgagggaag 387
            ||| ||||||||||||||
Sbjct: 1853 ggaactctatgagggaag 1870



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                             
Query: 106  agatgcgaggcaagcccagggtttcatctccttcttcaagaagttgccg 154
            ||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 1130 agatgcgagacaagcgcagggtttcatctccttcttcaagaagctgccg 1178

>gb|DQ117988.1| Physcomitrella patens DNA mismatch repair protein MSH2 gene, complete
            cds
          Length = 6681

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 190  ggattattacactgctcatggtgagaatgcaacctttattgc 231
            |||||||| ||||||||||||||| ||||||||||| |||||
Sbjct: 1333 ggattatttcactgctcatggtgataatgcaaccttcattgc 1374

>gb|AY650007.1| Petunia x hybrida DNA mismatch repair protein (MSH2) mRNA, complete
           cds
          Length = 3080

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 171 ttcgtctatttgatcgccgggattattacactgctcatgg 210
           ||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 209 ttcgtctctttgatcgtcgggactattatactgctcatgg 248

>gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 191463

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 118   agcccagggtttcatctccttc 139
             ||||||||||||||||||||||
Sbjct: 51057 agcccagggtttcatctccttc 51036

>emb|AL354979.17| Human DNA sequence from clone RP11-10J18 on chromosome 9, complete
             sequence
          Length = 85997

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   tctccttcttcaagaagttgc 152
             |||||||||||||||||||||
Sbjct: 39142 tctccttcttcaagaagttgc 39162

>ref|XM_323439.1| Neurospora crassa OR74A hypothetical protein (NCU04100.1) partial
            mRNA
          Length = 2121

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  tcatctccttcttcaagaag 148
            ||||||||||||||||||||
Sbjct: 1472 tcatctccttcttcaagaag 1491

>ref|XM_955769.1| Neurospora crassa OR74A hypothetical protein (NCU04100.1) partial
            mRNA
          Length = 2121

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  tcatctccttcttcaagaag 148
            ||||||||||||||||||||
Sbjct: 1472 tcatctccttcttcaagaag 1491

>gb|DQ279927.1| Human herpesvirus 4 strain AG876, complete genome
          Length = 172764

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    ggtttcatctccttcttcaa 144
              ||||||||||||||||||||
Sbjct: 158179 ggtttcatctccttcttcaa 158160

>emb|AL023655.1|HS242N11 Human DNA sequence from clone RP1-242N11 on chromosome 6p22.3-23,
              complete sequence
          Length = 167514

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    gtgttagcagggctatgttt 322
              ||||||||||||||||||||
Sbjct: 131659 gtgttagcagggctatgttt 131640

>emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BAC clone B16M17
          Length = 78402

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   tcatctccttcttcaagaag 148
             ||||||||||||||||||||
Sbjct: 54254 tcatctccttcttcaagaag 54273

>emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in linkage group 21, complete
              sequence
          Length = 263757

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 298    tgtcagtgttagcagggctatgtt 321
              ||||||||||||||||||| ||||
Sbjct: 249470 tgtcagtgttagcagggctctgtt 249447

>emb|AL112914.1|CNS01AGQ Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 tccttcttcaagaagttgcc 153
           ||||||||||||||||||||
Sbjct: 187 tccttcttcaagaagttgcc 206

>emb|AJ581750.1|CHE581750 Cercopithecine herpesvirus 12 (Baboon herpesvirus) gB gene for
            glycoprotein B
          Length = 2598

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 124  gggtttcatctccttcttcaagaa 147
            ||||||||||||||| ||||||||
Sbjct: 2193 gggtttcatctcctttttcaagaa 2216

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      tcgccgagcaggtcgcccgc 23
              ||||||||||||||||||||
Sbjct: 203949 tcgccgagcaggtcgcccgc 203968

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       atttcgccgagcaggtcgcc 20
               ||||||||||||||||||||
Sbjct: 1894081 atttcgccgagcaggtcgcc 1894062

>emb|AJ251097.1|EVI251097 Epstein-Barr virus mRNA for RPMS1 protein (rpms1 gene), strain C15
          Length = 4008

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  ggtttcatctccttcttcaa 144
            ||||||||||||||||||||
Sbjct: 1958 ggtttcatctccttcttcaa 1939

>emb|AJ251096.1|EVI251096 Epstein-Barr virus mRNA for A73 protein (a73 gene), strain C15
          Length = 2168

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  ggtttcatctccttcttcaa 144
            ||||||||||||||||||||
Sbjct: 1147 ggtttcatctccttcttcaa 1128

>emb|V01555.2|EBV Epstein-Barr virus (EBV) genome, strain B95-8
          Length = 172281

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    ggtttcatctccttcttcaa 144
              ||||||||||||||||||||
Sbjct: 157153 ggtttcatctccttcttcaa 157134

>gb|AY961628.3| Human herpesvirus 4 strain GD1, complete genome
          Length = 171657

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    ggtttcatctccttcttcaa 144
              ||||||||||||||||||||
Sbjct: 156606 ggtttcatctccttcttcaa 156587

>emb|AJ507799.2|HHV507799 Human herpesvirus 4 complete wild type genome
          Length = 171823

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    ggtttcatctccttcttcaa 144
              ||||||||||||||||||||
Sbjct: 156695 ggtttcatctccttcttcaa 156676

>gb|S56281.1|S56281 {clone T13, exons 1,2,3 and 4} [Epstein-Barr virus EBV, mRNA, 1035
           nt]
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 125 ggtttcatctccttcttcaa 144
           ||||||||||||||||||||
Sbjct: 38  ggtttcatctccttcttcaa 19

>gb|M80517.1|HS4B958RAJ Epstein-Barr virus, artifactual joining of B95-8 complete genome and the
              sequences from Raji of the large deletion found in B95-8
          Length = 184113

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    ggtttcatctccttcttcaa 144
              ||||||||||||||||||||
Sbjct: 168984 ggtttcatctccttcttcaa 168965


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,649,478
Number of Sequences: 3902068
Number of extensions: 2649478
Number of successful extensions: 42832
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42702
Number of HSP's gapped (non-prelim): 128
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)