ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50c02 |
|---|---|
| Clone Library Name | barley_pub |
>VDP_RAT (P41542) General vesicular transport factor p115| (Transcytosis-associated protein) (TAP) (Vesicle docking protein) Length = 959 Score = 52.4 bits (124), Expect = 6e-07 Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 1/102 (0%) Frame = +1 Query: 157 NIMQGI-GGFVFGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQM 333 N ++G+ GG G + +E++ +++ DR+++ T+ DDRR+A+ L+SL S+ ++ Sbjct: 2 NFLRGVMGGQSAGPQHTEAET---IQKLCDRVASSTLLDDRRNAVRALKSL---SKKYRL 55 Query: 334 SFGAMGFPVLLNVLKEDREDVELVRGALETLVSALTPIETSQ 459 G L++VL+ DR D E++ AL+TL + ++ E + Sbjct: 56 EVGIQAMEHLIHVLQTDRSDSEIIAYALDTLYNIISNDEEEE 97
>VDP_MOUSE (Q9Z1Z0) General vesicular transport factor p115| (Transcytosis-associated protein) (TAP) (Vesicle docking protein) Length = 959 Score = 52.4 bits (124), Expect = 6e-07 Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 1/102 (0%) Frame = +1 Query: 157 NIMQGI-GGFVFGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQM 333 N ++G+ GG G + +E++ +++ DR+++ T+ DDRR+A+ L+SL S+ ++ Sbjct: 2 NFLRGVMGGQSAGPQHTEAET---IQKLCDRVASSTLLDDRRNAVRALKSL---SKKYRL 55 Query: 334 SFGAMGFPVLLNVLKEDREDVELVRGALETLVSALTPIETSQ 459 G L++VL+ DR D E++ AL+TL + ++ E + Sbjct: 56 EVGIQAMEHLIHVLQTDRSDSEIIAYALDTLYNIISNDEEEE 97
>VDP_BOVIN (P41541) General vesicular transport factor p115| (Transcytosis-associated protein) (TAP) (Vesicle docking protein) Length = 961 Score = 52.0 bits (123), Expect = 8e-07 Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 1/102 (0%) Frame = +1 Query: 157 NIMQGI-GGFVFGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQM 333 N ++G+ GG G + +E++ +++ DR+++ T+ DDRR+A+ L+SL S+ ++ Sbjct: 2 NFLRGVMGGQSAGPQHTEAET---IQKLCDRVASSTLLDDRRNAVRALKSL---SKKYRL 55 Query: 334 SFGAMGFPVLLNVLKEDREDVELVRGALETLVSALTPIETSQ 459 G L++VL+ DR D E++ AL+TL + ++ E + Sbjct: 56 EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97
>VDP_HUMAN (O60763) General vesicular transport factor p115| (Transcytosis-associated protein) (TAP) (Vesicle docking protein) Length = 962 Score = 49.7 bits (117), Expect = 4e-06 Identities = 30/102 (29%), Positives = 60/102 (58%), Gaps = 1/102 (0%) Frame = +1 Query: 157 NIMQGI-GGFVFGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQM 333 N ++G+ GG G + +E++ +++ DR+++ T+ DDRR+A+ L+SL S+ ++ Sbjct: 2 NFLRGVMGGQSAGPQHTEAET---IQKLCDRVASSTLLDDRRNAVRALKSL---SKKYRL 55 Query: 334 SFGAMGFPVLLNVLKEDREDVELVRGALETLVSALTPIETSQ 459 G L++VL+ DR D E++ AL+ L + ++ E + Sbjct: 56 EVGIQAMEHLIHVLQTDRSDSEIIGYALDILYNIISNEEEEE 97
>USO1_YEAST (P25386) Intracellular protein transport protein USO1 (Int-1)| Length = 1790 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/71 (38%), Positives = 38/71 (53%) Frame = +1 Query: 217 DSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQMSFGAMGFPVLLNVLKEDREDV 396 D + DR+ N T+ DRRSA+ L++ SR + S A G LLN LK D D Sbjct: 17 DETIPTLCDRVENSTLISDRRSAVLGLKAF---SRQYRESVIASGLKPLLNTLKRDYMDE 73 Query: 397 ELVRGALETLV 429 + V+ LET++ Sbjct: 74 DSVKAILETIL 84
>YAF3_SCHPO (Q09857) Hypothetical protein C29E6.03c in chromosome I| Length = 1044 Score = 36.2 bits (82), Expect = 0.045 Identities = 19/69 (27%), Positives = 36/69 (52%) Frame = +1 Query: 217 DSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQMSFGAMGFPVLLNVLKEDREDV 396 D + + DR+ + T+ +DR++A ++S E + + G G ++ L D +D Sbjct: 21 DETISKLCDRLEHATLFEDRKAAALGIKSFAREFKELVAAHGLKG---IIQSLHRDYDDP 77 Query: 397 ELVRGALET 423 EL++ LET Sbjct: 78 ELLKVTLET 86
>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid| antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3060 Score = 31.6 bits (70), Expect = 1.1 Identities = 30/99 (30%), Positives = 45/99 (45%) Frame = +1 Query: 154 KNIMQGIGGFVFGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQM 333 +N+++ I NEAS DS + S+G P MT L ESR Sbjct: 2850 QNLIKRITTSQLVNEASTVPSDSQMSD-----SSGVSP------MTNSSELKPESRDDPF 2898 Query: 334 SFGAMGFPVLLNVLKEDREDVELVRGALETLVSALTPIE 450 G + +LLN+LK+D+ + + G E L+ LT +E Sbjct: 2899 CIGNLKSELLLNILKQDQHS-QKITGVFE-LMRELTHME 2935
>FBX32_MOUSE (Q9CPU7) F-box only protein 32 (Muscle atrophy F-box protein)| (MAFbx) (Atrogin-1) Length = 355 Score = 30.8 bits (68), Expect = 1.9 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = +1 Query: 187 FGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQMSFGAMGFPVLL 366 F +S+ +YV R L+ I+ +S +T L + AQ +F + V+L Sbjct: 109 FSTAILDSRRFNYVVRLLELIA--------KSQLTSLSGI------AQKNFMNILEKVVL 154 Query: 367 NVLKEDREDVELVRGALETLVSAL 438 VL ED++++ L+R L+TL ++L Sbjct: 155 KVL-EDQQNIRLIRELLQTLYTSL 177
>FBX32_HUMAN (Q969P5) F-box only protein 32 (Muscle atrophy F-box protein)| (MAFbx) (Atrogin-1) Length = 355 Score = 30.8 bits (68), Expect = 1.9 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = +1 Query: 187 FGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQMSFGAMGFPVLL 366 F +S+ +YV R L+ I+ +S +T L + AQ +F + V+L Sbjct: 109 FSTAILDSRRFNYVVRLLELIA--------KSQLTSLSGI------AQKNFMNILEKVVL 154 Query: 367 NVLKEDREDVELVRGALETLVSAL 438 VL ED++++ L+R L+TL ++L Sbjct: 155 KVL-EDQQNIRLIRELLQTLYTSL 177
>FBX32_RAT (Q91Z62) F-box only protein 32 (Muscle atrophy F-box protein)| (MAFbx) (Atrogin-1) Length = 350 Score = 30.8 bits (68), Expect = 1.9 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = +1 Query: 187 FGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQMSFGAMGFPVLL 366 F +S+ +YV R L+ I+ +S +T L + AQ +F + V+L Sbjct: 104 FSTAILDSRRFNYVVRLLELIA--------KSQLTSLSGI------AQKNFMNILEKVVL 149 Query: 367 NVLKEDREDVELVRGALETLVSAL 438 VL ED++++ L+R L+TL ++L Sbjct: 150 KVL-EDQQNIRLIRELLQTLYTSL 172
>Y119_NPVAC (P41672) Hypothetical 59.7 kDa protein in HE65-PK2 intergenic| region precursor Length = 530 Score = 29.6 bits (65), Expect = 4.2 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = -3 Query: 325 PNGSLPRGTVAQSWQTSYHQASCRCLCDRGISRHNYLPWTRTPRCRKR 182 P G P G + + + AS RC+CD G +Y T TP CR R Sbjct: 165 PVGCAPHGRI-----DNINSASIRCVCDDGYV-SDYNADTETPYCRPR 206
>ARAE1_ORYSA (Q8H930) Putative UDP-arabinose 4-epimerase 1 (EC 5.1.3.5)| (UDP-D-xylose 4-epimerase 1) (UDP-galactose 4-epimerase-like protein 1) (OsUEL-1) Length = 421 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +1 Query: 160 IMQGIGGFVFGNEASESKEDSYVERFLDRISNGTMPDDRRSAMTELQSLVAESRSAQMSF 339 ++ G G++ + A +DS+ +D +S G M A+ LQ+L +E Q + Sbjct: 76 LVTGGAGYIGSHAALRLLKDSFRVTIVDNLSRGNM-----GAIKVLQNLFSEPGRLQFIY 130 Query: 340 GAMGFPVLLN 369 +G P +N Sbjct: 131 ADLGDPKAVN 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.132 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,074,927 Number of Sequences: 219361 Number of extensions: 1283090 Number of successful extensions: 2747 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2744 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
