ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LPXK_RHIME (Q92RP7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 29 2.6
2HAD_AGRTR (P60527) 2-haloalkanoic acid dehalogenase (EC 3.8.1.2)... 28 7.7
3CAPP_STRAW (Q82HE3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 28 7.7

>LPXK_RHIME (Q92RP7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 346

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 111 ARSRGFRGAWISRGGGFSHDVAVVYQP 191
           AR+RG + A++SRG G S DV  V  P
Sbjct: 71  ARARGLKPAFLSRGYGGSLDVTTVVDP 97



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>HAD_AGRTR (P60527) 2-haloalkanoic acid dehalogenase (EC 3.8.1.2)|
           (L-2-haloacid dehalogenase) (Halocarboxylic acid
           halidohydrolase) (L-DEX) (Cryptic L-isomer-specific
           dehalogenase) (DhlS5I)
          Length = 232

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 93  GSDQSGARSRGFRGAWISRGG 155
           G D +GAR  GF   WI+RGG
Sbjct: 178 GWDATGARYFGFPTCWINRGG 198



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>CAPP_STRAW (Q82HE3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 910

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 75  RRLDQIGSDQSGARSRGF--RGAWISRGGGFSHDVAVVYQP 191
           RRL  + + + G R R F  RG  + RGGG SHD A++ QP
Sbjct: 584 RRLRDV-AHRYGVRLRLFHGRGGTVGRGGGPSHD-AILAQP 622


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,243,713
Number of Sequences: 219361
Number of extensions: 410268
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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