ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50b08 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 60.8 bits (146), Expect = 2e-09 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Frame = +2 Query: 80 KAGVELQVCNF--LLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLC 253 K G++ ++ + LL+ + + L M +G P+ Y +S+L+ Y K+ Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV- 387 Query: 254 PEEALELLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCFNA 433 ++A+ + S+M +G+ PNA TY + LC++ +V+ A + + M G + +N+ Sbjct: 388 -DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446 Query: 434 VIHGFC 451 +IHG C Sbjct: 447 LIHGLC 452 Score = 59.3 bits (142), Expect = 4e-09 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%) Frame = +2 Query: 2 VYATIIRVFVELSMFEDALLTYVEAKKAGVELQVC--NFLLKRLVERNQTMYARSLFQDM 175 VY ++I + +E A +E G+ L N ++ + + + + LF+ M Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM 502 Query: 176 KSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAK 355 G PNV +Y+ L++ Y K+ +EA++LLS M G++PN TY+T + G C+ Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKM--DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560 Query: 356 QVKSAWNFLQMMCQRGYPCNSYCFNAVIHG 445 +++ A + M G + +N ++ G Sbjct: 561 RMEDALVLFKEMESSGVSPDIITYNIILQG 590 Score = 57.0 bits (136), Expect = 2e-08 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Frame = +2 Query: 107 NFLLKRLVERNQTMYARSLFQ---DMKSSGPSPNVYSYS-VLMSMYTHGAKLCPEEALEL 274 N LLK L + N++ A L D + G P+V SY+ V+ + G ++A Sbjct: 162 NILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS---DKAYST 218 Query: 275 LSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCFNAVIHGFC 451 EM G+ P+ TY + + LC+A+ + A L M + G + +N+++HG+C Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277 Score = 55.8 bits (133), Expect = 5e-08 Identities = 32/100 (32%), Positives = 49/100 (49%) Frame = +2 Query: 152 ARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATY 331 A L M S G PN +YS L++ Y +++ E+AL L EME GV P+ TY Sbjct: 530 AMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM--EDALVLFKEMESSGVSPDIITYNII 587 Query: 332 LYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCFNAVIHGFC 451 L GL + ++ +A + + G +N ++HG C Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627 Score = 53.9 bits (128), Expect = 2e-07 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Frame = +2 Query: 5 YATIIRVFVELSMFEDALLTYVEAKKAGVELQ--VCNFLLKRLVERNQTMYARSLFQDMK 178 Y +I + + EDA+L + + G+ V N L+ L N+ A L +M Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468 Query: 179 SSGPSPN-VYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAK 355 G N ++ S++ S G + E+ EL+ + GV+PN TY T + G C A Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI---GVKPNVITYNTLINGYCLAG 525 Query: 356 QVKSAWNFLQMMCQRGYPCNSYCFNAVIHGFC 451 ++ A L M G N+ ++ +I+G+C Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557 Score = 51.2 bits (121), Expect = 1e-06 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 2/150 (1%) Frame = +2 Query: 5 YATIIRVFVELSMFEDALLTYVEAKKAGV--ELQVCNFLLKRLVERNQTMYARSLFQDMK 178 Y T+I F + + A TY E G+ ++ N ++ L + A + M Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258 Query: 179 SSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAKQ 358 +G P+ +Y+ ++ Y + P+EA+ L +M +GV P+ TY+ + LC+ + Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQ--PKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316 Query: 359 VKSAWNFLQMMCQRGYPCNSYCFNAVIHGF 448 A M +RG + ++ G+ Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGY 346 Score = 48.1 bits (113), Expect = 1e-05 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 2/147 (1%) Frame = +2 Query: 5 YATIIRVFVELSMFEDALLTYVEAKKAGV--ELQVCNFLLKRLVERNQTMYARSLFQDMK 178 Y +II + + A+ K GV + N +L Q A + M+ Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293 Query: 179 SSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAKQ 358 S G P+V +YS+LM + EA ++ M G++P TY T L G Sbjct: 294 SDGVEPDVVTYSLLMDYLCKNGRCM--EARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351 Query: 359 VKSAWNFLQMMCQRGYPCNSYCFNAVI 439 + L +M + G + Y F+ +I Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILI 378 Score = 45.8 bits (107), Expect = 5e-05 Identities = 26/93 (27%), Positives = 45/93 (48%) Frame = +2 Query: 161 LFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYG 340 LF++M+SSG SP++ +Y++++ + A EL + G + +TY L+G Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAA--AKELYVRITESGTQIELSTYNIILHG 625 Query: 341 LCRAKQVKSAWNFLQMMCQRGYPCNSYCFNAVI 439 LC+ K A Q +C + FN +I Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMI 658 Score = 33.1 bits (74), Expect = 0.34 Identities = 17/100 (17%), Positives = 42/100 (42%) Frame = +2 Query: 152 ARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATY 331 AR +F ++ G ++Y + ++ + ++ + V P+ TY Sbjct: 34 ARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGIL 93 Query: 332 LYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCFNAVIHGFC 451 + CRA ++ + L + ++G+ ++ F ++ G C Sbjct: 94 IGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC 133 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Frame = +2 Query: 272 LLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQ---RGYPCNSYCFNAVIH 442 +L M G PN +Y L GLC + + A L MM G P + + VI+ Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204 Query: 443 GF 448 GF Sbjct: 205 GF 206
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 47.4 bits (111), Expect = 2e-05 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Frame = +2 Query: 95 LQVCNFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLMSMYTHGA-KLCPEEALE 271 L+ C LL L +T +A ++ ++ G +V Y+ L+ +Y K P + Sbjct: 6 LRSCGSLLPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTD--- 62 Query: 272 LLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCFNAVIHG 445 L++ME ++PN TY + C ++ A L M + P F+A++ G Sbjct: 63 FLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTG 120
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 46.6 bits (109), Expect = 3e-05 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%) Frame = +2 Query: 5 YATIIRVFVELSMFEDAL-LTYVEAKKAGVEL--QVCNFLLKRLVERNQTMYARSLFQDM 175 Y T++ + +L E+A + Y + + AG+ N LL L + A LF++M Sbjct: 121 YNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEM 180 Query: 176 KSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAK 355 +S P + +Y++L++ ++ A +L+E++ G PNA TY T L + + Sbjct: 181 QSRF-KPELMTYNILINGLCKSRRV--GTAKWMLTELKKSGYTPNAVTYTTILKLYFKTR 237 Query: 356 QVKSAWNFLQMMCQRGYPCNSYCFNAVI 439 +++ M + GY + Y + AV+ Sbjct: 238 RIRRGLQLFLEMKREGYTYDGYAYFAVV 265 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/118 (24%), Positives = 52/118 (44%) Frame = +2 Query: 86 GVELQVCNFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPEEA 265 G+ ++ N + L + + A SL D G P+V +Y+ L+S Y + EEA Sbjct: 10 GLSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGI--EEA 67 Query: 266 LELLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCFNAVI 439 + M G+RP+ ATY + + G R + M + G + + +N ++ Sbjct: 68 YAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLM 125 Score = 33.1 bits (74), Expect = 0.34 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Frame = +2 Query: 248 LCPEEALELLSEMEVEGVR----PNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGYPCN 415 LC LE + ++G+R P+ TY T + G CR ++ A+ + M G + Sbjct: 23 LCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPD 82 Query: 416 SYCFNAVIHG 445 +N++I G Sbjct: 83 VATYNSLIAG 92
>AEP3_KLULA (Q6CIF3) ATPase expression protein 3| Length = 593 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Frame = +2 Query: 134 RNQTMYARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPE-----EALELLSEMEVEG 298 +N R L+ MKS G +PNV +Y++++ ++L + EA+ L M+ E Sbjct: 226 KNNFATCRELYAQMKSEGIAPNVQTYNLMLRNLLRNSRLIKQQLPYREAIFYLERMKKEN 285 Query: 299 VRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCFNAVI 439 + + T+ T + L K S FL+ M +RG P + ++ Sbjct: 286 ISADVITWNTCYFLL---KDNISRAIFLEKMVERGVPLTYHLLYGIL 329 Score = 31.2 bits (69), Expect = 1.3 Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Frame = +2 Query: 23 VFVELSMFED--ALLTYVEAKKAGVELQ--VCNFLLKRLVERNQTMYA----RSLFQDMK 178 V ++ FED LLT+ + G LQ + LLK L+ + A S+F D+ Sbjct: 161 VLSDIQEFEDYIGLLTHTKFHHKGSSLQDGIIPKLLKNLLHPSNLRIAPLKTASVFNDV- 219 Query: 179 SSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCR 349 +Y +G K EL ++M+ EG+ PN TY L L R Sbjct: 220 ----------------IYYYGNKNNFATCRELYAQMKSEGIAPNVQTYNLMLRNLLR 260
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 37.7 bits (86), Expect = 0.014 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Frame = +2 Query: 152 ARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATY 331 A ++F++ K P+V+ Y+ ++S + E +L EM+ G+ P + TY T Sbjct: 910 ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTT--ECWKLFQEMKESGLLPTSVTYGTV 967 Query: 332 LYGLCRAKQVKSAWN-FLQMMCQRGYPCNSYCFNAVI 439 + CR A F +M Q Y +N +I Sbjct: 968 INAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMI 1004 Score = 32.7 bits (73), Expect = 0.45 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Frame = +2 Query: 53 ALLTYVEAKKAGVELQVC--NFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLMS 226 AL + E K+ V+ V N +L +L +T LFQ+MK SG P +Y ++ Sbjct: 910 ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVI- 968 Query: 227 MYTHGAKLCPEEAL--ELLSEMEVE-GVRPNAATYATYL 334 + A +E+L +L +EME + +P A Y T + Sbjct: 969 ---NAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMI 1004 Score = 29.3 bits (64), Expect = 4.9 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = +2 Query: 116 LKRLVERNQTMYARSLFQDMKSSGPSPNVYSYS-VLMSMYTHGAKLCPEEALELLSEMEV 292 LKRL +++ L++ +++S + +Y+ VL M T L + ++ + ++ V Sbjct: 187 LKRLASSKLSIHTFDLYKLVRNSPELLTLEAYNIVLQCMSTDDYFLSSSKNIQKIIKVYV 246 Query: 293 EG----VRPNAATYATYLYGLCR 349 + + PN T+ T ++ LCR Sbjct: 247 DMLNSFISPNVTTFETVIFALCR 269
>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1| Length = 698 Score = 36.6 bits (83), Expect = 0.031 Identities = 29/123 (23%), Positives = 55/123 (44%) Frame = +2 Query: 47 EDALLTYVEAKKAGVELQVCNFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLMS 226 E LL ++ + +L N L+++ + A++L + G PN+ ++ L + Sbjct: 502 ESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNL-A 560 Query: 227 MYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGY 406 + H P++ L+LL++M+ V PN+ Y+ + R N L+ M Q Sbjct: 561 IGCHR----PKDGLQLLTDMKKSQVTPNSHIYSALINAAVRKLNYTYLINILKDMKQNRV 616 Query: 407 PCN 415 P N Sbjct: 617 PVN 619
>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1| Length = 695 Score = 35.4 bits (80), Expect = 0.069 Identities = 27/126 (21%), Positives = 57/126 (45%) Frame = +2 Query: 38 SMFEDALLTYVEAKKAGVELQVCNFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSV 217 S E +LL+ ++ + ++ N L+++ + A++L + G PN+ ++ Sbjct: 499 SAAESSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCN 558 Query: 218 LMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQ 397 L ++ H P + ++LL++M+ V PN Y+T + + + L+ M Q Sbjct: 559 L-AIGCHR----PRDGMQLLADMKKSQVSPNIHIYSTLINAALKKLDYTYLISILKDMRQ 613 Query: 398 RGYPCN 415 P N Sbjct: 614 NSVPVN 619
>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1| Length = 700 Score = 34.3 bits (77), Expect = 0.15 Identities = 28/123 (22%), Positives = 54/123 (43%) Frame = +2 Query: 47 EDALLTYVEAKKAGVELQVCNFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLMS 226 E LL ++ + +L N L+++ + A++L + G PN+ ++ L + Sbjct: 504 ESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNL-A 562 Query: 227 MYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGY 406 + H P++ L+LL++M+ V PN Y+ + R + L+ M Q Sbjct: 563 IGCHR----PKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRV 618 Query: 407 PCN 415 P N Sbjct: 619 PVN 621
>AEP3_CANGA (Q6FKT1) ATPase expression protein 3| Length = 623 Score = 33.1 bits (74), Expect = 0.34 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Frame = +2 Query: 227 MYTHGAKLCPEEALELLSEMEVEGVRPNAATYATYLYGLCR---AKQVKSAWN----FLQ 385 +Y + K EL ++M+VEG +PN TY L L + ++++S N +L+ Sbjct: 225 LYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELLFYLR 284 Query: 386 MMCQRGYPCNSYCFN 430 M + G C++ +N Sbjct: 285 NMQKNGIFCDTVTWN 299
>CI021_FUGRU (Q8AV19) UPF0308 protein C9orf21 homolog (fmHP)| Length = 226 Score = 30.4 bits (67), Expect = 2.2 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -2 Query: 233 YTYSSKLNKSRHLVKDQNSSYLETNSLHTWSDSAQPSASARSCILAAQLQPSW 75 Y Y ++ RH+ + ET ++DSAQPS +S I A Q++ W Sbjct: 112 YPYEIYVDPDRHIYQKLGMKREET-----FTDSAQPSPHVKSGIFAGQMKSIW 159
>TERL_BPSPP (P54308) Terminase large subunit (G2P)| Length = 422 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 266 ELPPGITWLHVYTYSSKLNKSRHLVKDQNSSYLETNS 156 ELPPG ++ Y+Y+ K + K NSS+L N+ Sbjct: 156 ELPPGCRYIFFYSYNPPKRKQSWVNKVFNSSFLPANT 192
>CC020_MOUSE (Q8CDN1) Protein C3orf20 homolog| Length = 933 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -2 Query: 140 DSAQPSASARSCILAAQLQPSWPRHK*GEHPQTWTAPQKP 21 DS P + +A QPS + G H Q W P+KP Sbjct: 329 DSHHPLTTGTQITASAPHQPSSQHAQMGRHSQEWKGPKKP 368
>NOC4L_RAT (Q5I0I8) Nucleolar complex protein 4 homolog (NOC4 protein homolog)| (NOC4-like protein) (Nucleolar complex-associated protein 4-like protein) Length = 516 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%) Frame = +2 Query: 71 EAKKAGVELQVCNFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLM--------- 223 E K GV + C+ L L+ER + +DM +G Y Y V M Sbjct: 44 EEIKEGV--RTCSRLFGTLLEREELFVGSLPCEDMALAGSQGATYKYKVWMRHRYHSCCN 101 Query: 224 ---SMYTHGAKLCPEEALE-LLSEMEVEGVRP 307 + TH + E ALE L+ +++EG +P Sbjct: 102 RLEELLTHPSFQVKELALETLMKFVQLEGAKP 133
>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 877 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +2 Query: 257 EEALELLSEMEVEGVRPNAATYATYLYGLCRAKQVKSAWNFLQMMCQRGYPCNSYCF 427 E E + E E+ + T+A Y + K+ WN ++MC++G N C+ Sbjct: 155 ESCNETIIEKELNEEPASNCTFAMAGYVRDQKKKYSVVWNDAEIMCKKGNNSNRECY 211
>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein| Length = 1863 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 194 PNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNAATYATY 331 P+ Y +LM + G P A+ +L EM+ G+ PNA TY Y Sbjct: 808 PDEVCYRILMQLC--GQYDQPVLAVRVLFEMQKAGIDPNAITYGYY 851
>MRAW_BACLD (Q65JY8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 312 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +2 Query: 17 IRVFVELSMFEDALLTYVEAKKAGVELQVCNFLLKRLVERNQTMYARSLFQDMKSSGPSP 196 I V EL +FE+ALL +E K G + V F + +S F+DM S P Sbjct: 211 IAVNDELRVFEEALLQAIEVLKPGGRVSVITF------HSLEDRICKSTFKDMSSPPELP 264 Query: 197 N 199 + Sbjct: 265 H 265
>LRC34_MOUSE (Q9DAM1) Leucine-rich repeat-containing protein 34| Length = 415 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -3 Query: 154 CIHGLIPLNQALQQEVAYLQLNSSLLGLDISEESILKHGQL 32 C HG+ N LQQ L LNSSL LD+S I + G + Sbjct: 225 CKHGM--KNYGLQQLCNALYLNSSLRYLDVSCNKITRDGMV 263
>DRTS_TOXGO (Q07422) Bifunctional dihydrofolate reductase-thymidylate synthase| (DHFR-TS) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)] Length = 610 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/64 (29%), Positives = 28/64 (43%) Frame = +2 Query: 101 VCNFLLKRLVERNQTMYARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLS 280 +C F + E + MY RS + G N+ SYS+L M H L P+E + + Sbjct: 492 LCQFYVNDQKELSCIMYQRSCDVGL---GVPFNIASYSLLTLMVAHVCNLKPKEFIHFMG 548 Query: 281 EMEV 292 V Sbjct: 549 NTHV 552
>LIPA1_PROMA (Q7V9Z9) Lipoyl synthase 1 (EC 2.8.1.-) (Lipoic acid synthase 1)| (Lipoate synthase 1) (Lipoyl-acyl-carrier protein synthase 1) (Sulfur insertion protein lipA1) (Lip-syn 1) Length = 294 Score = 28.5 bits (62), Expect = 8.4 Identities = 24/67 (35%), Positives = 32/67 (47%) Frame = +2 Query: 134 RNQTMYARSLFQDMKSSGPSPNVYSYSVLMSMYTHGAKLCPEEALELLSEMEVEGVRPNA 313 R Q +Y RSL + SPNVYS S LM G +E L++LS++ V + Sbjct: 176 RPQGLYKRSLELLRRVRQESPNVYSKSGLMV----GLGETDDEVLQVLSDLHDNNV--DI 229 Query: 314 ATYATYL 334 T YL Sbjct: 230 VTIGQYL 236
>SODF_RHOCA (O30970) Superoxide dismutase [Fe] (EC 1.15.1.1)| Length = 200 Score = 28.5 bits (62), Expect = 8.4 Identities = 8/26 (30%), Positives = 17/26 (65%) Frame = -3 Query: 334 EVSSIGCSIWPHTFHFHFRKKL*SFL 257 + + +GC +W H+++ FR K ++L Sbjct: 158 QTALLGCDVWEHSYYIDFRNKRPAYL 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,604,780 Number of Sequences: 219361 Number of extensions: 1291658 Number of successful extensions: 4063 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3925 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4051 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
