>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  293 bits (148), Expect = 3e-76
 Identities = 364/436 (83%)
 Strand = Plus / Plus

                                                                            
Query: 15       tcatccgggtttttgtggagctgtccatgtttgaggatgctctcctcacttatgtcgagg 74
                |||| ||||||||| | ||| |||| |||||||||||||||||  |||| ||  ||||||
Sbjct: 25280726 tcatacgggtttttatagagttgtcaatgtttgaggatgctcttgtcacctacatcgagg 25280785

                                                                            
Query: 75       ccaagaaggctggagttgagctgcaagtatgcaacttcttgctgaagcgcttggttgagc 134
                ||||||||  |||||||||||| ||  | ||||||||||||||||||  ||| ||  || 
Sbjct: 25280786 ccaagaagattggagttgagcttcagctttgcaacttcttgctgaagtccttagtcaaga 25280845

                                                                            
Query: 135      ggaatcagaccatgtatgcaaggagtttgtttcaagatatgaagagttctggtccttcac 194
                ||||||||  ||||||||| |||||||||||| | |||||||||||  ||||||| ||||
Sbjct: 25280846 ggaatcagttcatgtatgcgaggagtttgtttgatgatatgaagagcactggtccctcac 25280905

                                                                            
Query: 195      caaatgtctactcttattcagttttgatgagtatgtatacacatggagccaagttatgcc 254
                |||||||||||||||||||||||||||||||||||||||||||||| |  ||   |||  
Sbjct: 25280906 caaatgtctactcttattcagttttgatgagtatgtatacacatggtgataaaccatgtt 25280965

                                                                            
Query: 255      cggaggaagctctagagcttctttctgaaatggaagtggaaggtgtgaggccaaatgctg 314
                 |||||||||| | || ||||||| ||||||| || |   ||| |||| ||| | ||| |
Sbjct: 25280966 tggaggaagcttttgatcttctttgtgaaatgaaaatcagaggcgtgaagccgactgcgg 25281025

                                                                            
Query: 315      caacctatgctacttacctctacgggctttgccgtgccaaacaggtgaaatctgcatgga 374
                ||||||| |  || ||||| || || ||||||||||||||||| ||  ||||||||||| 
Sbjct: 25281026 caacctacggaacctacctttatggactttgccgtgccaaacaagtcgaatctgcatggg 25281085

                                                                            
Query: 375      acttcctccaaatgatgtgccagagaggctacccttgcaacagctattgttttaatgcag 434
                |||| || ||| || |  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 25281086 actttcttcaagtgcttcggcagagaggctacccttgcaacagctattgttttaatgcag 25281145

                                
Query: 435      ttattcatggtttctg 450
                | ||||||||||||||
Sbjct: 25281146 tgattcatggtttctg 25281161

>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0616D06
          Length = 153800

 Score =  293 bits (148), Expect = 3e-76
 Identities = 364/436 (83%)
 Strand = Plus / Plus

                                                                         
Query: 15    tcatccgggtttttgtggagctgtccatgtttgaggatgctctcctcacttatgtcgagg 74
             |||| ||||||||| | ||| |||| |||||||||||||||||  |||| ||  ||||||
Sbjct: 97397 tcatacgggtttttatagagttgtcaatgtttgaggatgctcttgtcacctacatcgagg 97456

                                                                         
Query: 75    ccaagaaggctggagttgagctgcaagtatgcaacttcttgctgaagcgcttggttgagc 134
             ||||||||  |||||||||||| ||  | ||||||||||||||||||  ||| ||  || 
Sbjct: 97457 ccaagaagattggagttgagcttcagctttgcaacttcttgctgaagtccttagtcaaga 97516

                                                                         
Query: 135   ggaatcagaccatgtatgcaaggagtttgtttcaagatatgaagagttctggtccttcac 194
             ||||||||  ||||||||| |||||||||||| | |||||||||||  ||||||| ||||
Sbjct: 97517 ggaatcagttcatgtatgcgaggagtttgtttgatgatatgaagagcactggtccctcac 97576

                                                                         
Query: 195   caaatgtctactcttattcagttttgatgagtatgtatacacatggagccaagttatgcc 254
             |||||||||||||||||||||||||||||||||||||||||||||| |  ||   |||  
Sbjct: 97577 caaatgtctactcttattcagttttgatgagtatgtatacacatggtgataaaccatgtt 97636

                                                                         
Query: 255   cggaggaagctctagagcttctttctgaaatggaagtggaaggtgtgaggccaaatgctg 314
              |||||||||| | || ||||||| ||||||| || |   ||| |||| ||| | ||| |
Sbjct: 97637 tggaggaagcttttgatcttctttgtgaaatgaaaatcagaggcgtgaagccgactgcgg 97696

                                                                         
Query: 315   caacctatgctacttacctctacgggctttgccgtgccaaacaggtgaaatctgcatgga 374
             ||||||| |  || ||||| || || ||||||||||||||||| ||  ||||||||||| 
Sbjct: 97697 caacctacggaacctacctttatggactttgccgtgccaaacaagtcgaatctgcatggg 97756

                                                                         
Query: 375   acttcctccaaatgatgtgccagagaggctacccttgcaacagctattgttttaatgcag 434
             |||| || ||| || |  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 97757 actttcttcaagtgcttcggcagagaggctacccttgcaacagctattgttttaatgcag 97816

                             
Query: 435   ttattcatggtttctg 450
             | ||||||||||||||
Sbjct: 97817 tgattcatggtttctg 97832

>gb|AC108943.4| Mus musculus BAC clone RP23-66D23 from chromosome 18, complete sequence
          Length = 191642

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 413    aacagctattgttttaatgcagt 435
              |||||||||||||||||||||||
Sbjct: 119471 aacagctattgttttaatgcagt 119493

>emb|AJ965601.1| Pisum sativum PDR1 retrotransposon partial left terminal repeat,
           clone LTR_tg_70+
          Length = 156

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 419 tattgttttaatgcagttatt 439
           |||||||||||||||||||||
Sbjct: 58  tattgttttaatgcagttatt 78

>gb|AC160123.2| Mus musculus BAC clone RP23-354J5 from chromosome 9, complete sequence
          Length = 199457

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 270    agcttctttctgaaatggaagtggaaggt 298
              ||||||||||||||||||| ||| |||||
Sbjct: 122034 agcttctttctgaaatggatgtgtaaggt 122062

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 362     aaatctgcatggaacttcctc 382
               |||||||||||||||||||||
Sbjct: 2468451 aaatctgcatggaacttcctc 2468431

>emb|AL669940.14| Mouse DNA sequence from clone RP23-214P11 on chromosome 4, complete
              sequence
          Length = 129987

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    ttcagttttgatgagtatgta 231
              |||||||||||||||||||||
Sbjct: 108506 ttcagttttgatgagtatgta 108526

>gb|AC147673.3| Pan troglodytes BAC clone CH251-13F15 from Y, complete sequence
          Length = 164583

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    aaatctgcatggaacttcct 381
              ||||||||||||||||||||
Sbjct: 106914 aaatctgcatggaacttcct 106933

>gb|AC183838.2| Pan troglodytes BAC clone CH251-11K10 from chromosome 7, complete
             sequence
          Length = 153555

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    gctgcaagtatgcaacttct 113
             ||||||||||||||||||||
Sbjct: 75946 gctgcaagtatgcaacttct 75927

>gb|AC005011.2| Homo sapiens BAC clone GS1-111G14 from 7, complete sequence
          Length = 166069

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    gctgcaagtatgcaacttct 113
             ||||||||||||||||||||
Sbjct: 10228 gctgcaagtatgcaacttct 10209

>gb|AC139192.1| Pan troglodytes BAC clone RP43-44N16 from Y, complete sequence
          Length = 149965

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   aaatctgcatggaacttcct 381
             ||||||||||||||||||||
Sbjct: 57678 aaatctgcatggaacttcct 57659

>gb|AC139194.1| Pan troglodytes BAC clone RP43-164C2 from Y, complete sequence
          Length = 182587

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   aaatctgcatggaacttcct 381
             ||||||||||||||||||||
Sbjct: 27481 aaatctgcatggaacttcct 27462

>gb|AC137831.27| Medicago truncatula clone mth2-34o21, complete sequence
          Length = 117693

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ctgaaatggaagtggaaggt 298
             ||||||||||||||||||||
Sbjct: 91052 ctgaaatggaagtggaaggt 91033

>emb|AL590787.24| Human DNA sequence from clone RP11-271M24 on chromosome 13 Contains the
             MTMR6 gene for myotubularin related protein 6, the 5' end
             of a novel gene (KIAA0410) and 2 CpG islands, complete
             sequence
          Length = 122589

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   cttattcagttttgatgagt 226
             ||||||||||||||||||||
Sbjct: 44096 cttattcagttttgatgagt 44077

>gb|AY090869.1| Pan troglodytes palindrome P7 boundary 2 between arm and flanking
           region
          Length = 484

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 aaatctgcatggaacttcct 381
           ||||||||||||||||||||
Sbjct: 224 aaatctgcatggaacttcct 243

>gb|AY090868.1| Pan paniscus palindrome P7 boundary 2 between arm and flanking
           region
          Length = 484

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 aaatctgcatggaacttcct 381
           ||||||||||||||||||||
Sbjct: 224 aaatctgcatggaacttcct 243

>emb|BX247952.2| Mouse DNA sequence from clone RP24-405K16 on chromosome 4, complete
             sequence
          Length = 117872

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   cttattcagttttgatgagtatgt 230
             ||||||||||||| ||||||||||
Sbjct: 63543 cttattcagttttcatgagtatgt 63566

>emb|BX649484.12| Zebrafish DNA sequence from clone CH211-197H24 in linkage group 16,
              complete sequence
          Length = 196058

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    tcaagatatgaagagttctg 185
              ||||||||||||||||||||
Sbjct: 178468 tcaagatatgaagagttctg 178487

>dbj|BS000627.2| Pan troglodytes chromosome Y clone: PTB-087E03, complete sequence
          Length = 203922

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   aaatctgcatggaacttcct 381
             ||||||||||||||||||||
Sbjct: 90632 aaatctgcatggaacttcct 90613

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 362      aaatctgcatggaacttcct 381
                ||||||||||||||||||||
Sbjct: 21149029 aaatctgcatggaacttcct 21149048

>gb|AC090457.6| Homo sapiens chromosome 18, clone RP11-357H3, complete sequence
          Length = 173765

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   ttattcagttttgatgagtatgta 231
             |||||||||||||| |||||||||
Sbjct: 53732 ttattcagttttgaagagtatgta 53755

>gb|AC116343.2| Homo sapiens chromosome 5 clone RP11-207L6, complete sequence
          Length = 149195

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  aaatgatgtgccagagaggc 403
            ||||||||||||||||||||
Sbjct: 3576 aaatgatgtgccagagaggc 3595

>gb|AC012195.9| Homo sapiens chromosome 15, clone RP11-44F11, complete sequence
          Length = 106057

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   tgagtatgtatacacatgga 241
             ||||||||||||||||||||
Sbjct: 41416 tgagtatgtatacacatgga 41397

>gb|AC011114.5|AC011114 Homo sapiens, clone RP11-115A23, complete sequence
          Length = 101971

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   tgagtatgtatacacatgga 241
             ||||||||||||||||||||
Sbjct: 84615 tgagtatgtatacacatgga 84634

>gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete sequence
          Length = 157051

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 208    ttattcagttttgatgagtatgta 231
              |||||||||||||| |||||||||
Sbjct: 121528 ttattcagttttgaagagtatgta 121551

>gb|AC136590.2| Homo sapiens chromosome 5 clone CTD-2312G21, complete sequence
          Length = 301479

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    aaatgatgtgccagagaggc 403
              ||||||||||||||||||||
Sbjct: 121615 aaatgatgtgccagagaggc 121634

>gb|AC137551.1| Homo sapiens chromosome 5 clone RP11-867C24, complete sequence
          Length = 183535

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   aaatgatgtgccagagaggc 403
             ||||||||||||||||||||
Sbjct: 30774 aaatgatgtgccagagaggc 30755

>emb|BX470225.8| Mouse DNA sequence from clone RP24-83L7 on chromosome 4, complete
           sequence
          Length = 50842

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 420 attgttttaatgcagttattcatggttt 447
           |||||||||||||| || ||||||||||
Sbjct: 456 attgttttaatgcatttcttcatggttt 429

>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete
           sequence
          Length = 132427

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 catggaacttcctccaaatg 388
           ||||||||||||||||||||
Sbjct: 475 catggaacttcctccaaatg 494

>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    cgcttggttgagcggaatca 141
              ||||||||||||||||||||
Sbjct: 739823 cgcttggttgagcggaatca 739804

>emb|BX255916.7| Mouse DNA sequence from clone RP23-408N4 on chromosome 4, complete
              sequence
          Length = 119185

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 420    attgttttaatgcagttattcatggttt 447
              |||||||||||||| || ||||||||||
Sbjct: 117641 attgttttaatgcatttcttcatggttt 117614

>emb|AL844896.7| Mouse DNA sequence from clone RP23-356L21 on chromosome 2, complete
             sequence
          Length = 83203

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   catggaacttcctccaaatg 388
             ||||||||||||||||||||
Sbjct: 81678 catggaacttcctccaaatg 81697

>emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete
             sequence
          Length = 148507

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   cttgcaacagctattgtttt 427
             ||||||||||||||||||||
Sbjct: 57395 cttgcaacagctattgtttt 57414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,302,860
Number of Sequences: 3902068
Number of extensions: 4302860
Number of successful extensions: 89362
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89246
Number of HSP's gapped (non-prelim): 114
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)