ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl50b06 |
|---|---|
| Clone Library Name | barley_pub |
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 32.3 bits (72), Expect = 0.62 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -3 Query: 459 RSTDPGLPTPASRRRGTSLDQHPQPGPQTGRSTR 358 RS P P P R RG SL + P P P+ R R Sbjct: 809 RSVSPQRPPPGRRPRGDSLSRSPSPPPRYAREQR 842
>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640| Length = 1069 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +2 Query: 2 SPSPFSRLVP-LSLPNRNPPPILSQ*APHSSPARPGVPAP 118 SP PF + P P R P P +S+ P + ARPG P P Sbjct: 64 SPQPFPQQSPSYGAPQRGPSP-MSRPGPPAGMARPGGPPP 102
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 5 PSPFSRLVPLSLPNRNPPPILSQ*APHSSPARPGVPAP 118 P P + P LP PPP++ P S P PG+P P Sbjct: 491 PPPLPTMPPPVLPPSLPPPVMPPALPTSIPP-PGMPPP 527
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/37 (43%), Positives = 17/37 (45%) Frame = +2 Query: 8 SPFSRLVPLSLPNRNPPPILSQ*APHSSPARPGVPAP 118 +PFS P P PP AP ARPGVP P Sbjct: 155 NPFSSAQPADRPIPRPP------APRPGTARPGVPRP 185
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/37 (43%), Positives = 17/37 (45%) Frame = +2 Query: 8 SPFSRLVPLSLPNRNPPPILSQ*APHSSPARPGVPAP 118 +PFS P P PP AP ARPGVP P Sbjct: 155 NPFSSAQPADRPIPRPP------APRPGTARPGVPRP 185
>GATA3_HUMAN (P23771) Trans-acting T-cell-specific transcription factor GATA-3| (GATA-binding factor 3) Length = 443 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Frame = +1 Query: 235 PVPDEVVGGSQGSKGSCFPPGELTTSLHSPDRCYQVIILQAPRA--PPSLWSGLWVLIQG 408 P+PD + S S+GS G ++S H P Y + + PPS G G Sbjct: 189 PLPDSMKLESSHSRGSMTALGGASSSTHHPITTYPPYVPEYSSGLFPPSSLLGGSPTGFG 248 Query: 409 RSTPPTCRSRQARVCGSC 462 + P RS R C +C Sbjct: 249 CKSRPKARSSTGRECVNC 266
>RPA1_YEAST (P10964) DNA-directed RNA polymerase I 190 kDa polypeptide (EC| 2.7.7.6) (A190) Length = 1664 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 381 PQTGRSTRGLKDDHLVASIW*M*RGSKFTR 292 P +G RGL DH+ A +W + S FTR Sbjct: 660 PTSGSPVRGLIQDHISAGVWLTSKDSFFTR 689
>V70K_EPMV (P20129) 70 kDa protein| Length = 649 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 459 RSTDPGLPTPASRRRGTSLDQHPQPGPQTGRSTR 358 RS DP PTP + TSL + P P P + S + Sbjct: 462 RSCDPESPTPTLGHKTTSLSRLPLPPPHSPHSAQ 495
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1 Query: 212 KDRLANHGKIEESPRLCSSSRARAPAP*QIHP 117 +D L I +SPRLCSS+ + + P +HP Sbjct: 222 RDSLFRPYDISKSPRLCSSNGSSSATPLPLHP 253
>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1| kinase) (SAD1A) Length = 794 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -3 Query: 225 AEKSQGQASKSRQDRGKSSPLLLKPRTRARALTDPPGAGTPGRAG 91 A+ SQ S S G SS L PR+ + + PGAG R G Sbjct: 440 AQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEARGG 484
>ZN575_MACFA (Q9GM03) Zinc finger protein 575| Length = 260 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/52 (38%), Positives = 23/52 (44%) Frame = -2 Query: 262 CPQLPHQARVDPSGEISRTG*QITAR*RKVLASAPQAAHARPRPDRSTRCRD 107 CP PHQ P + S++ TA ASAP RP P R RC D Sbjct: 39 CPPAPHQG---PLQKPSQSAPGPTAS-----ASAPPRPRRRPPPQRPHRCPD 82
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 Query: 53 PPPILSQ*APHSSPARPGVPAP 118 PPP L PH+ P PGVP P Sbjct: 560 PPPPLYPPPPHTLPLPPGVPPP 581
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 Query: 53 PPPILSQ*APHSSPARPGVPAP 118 PPP L PH+ P PGVP P Sbjct: 561 PPPPLYPPPPHTLPLPPGVPPP 582
>IL21_HUMAN (Q9HBE4) Interleukin-21 precursor (IL-21) (Za11)| Length = 155 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 235 PVPDEVVGGSQGSKGSCFPPGEL-TTSLHSPDRCYQVIILQAPRAPPSLWSGLWVLIQGR 411 P P++V + S SCF +L + + + +R V I + R PPS +G + R Sbjct: 55 PAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGR--RQKHR 112 Query: 412 STPPTCRSRQAR 447 T P+C S + + Sbjct: 113 LTCPSCDSYEKK 124
>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 581 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = -3 Query: 285 ARTFASLAAPNYLIRHGSIQAEKSQGQASKSRQDRGKSSPLLLKPRTRARALTDPPGAGT 106 ART ++ A+P G+ S QAS ++ + P P + A T PPG + Sbjct: 12 ARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGT-PPGRAS 70 Query: 105 PGRA 94 PGRA Sbjct: 71 PGRA 74
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = +2 Query: 2 SPSPFSR--LVPLSLPNRNPPPILSQ*APHSSPARPGVPAP 118 SP PF VP S PNR PP + S+ + +SP+RP P P Sbjct: 822 SPDPFGPPPQVP-SRPNRAPPGVPSR-SGQASPSRPESPRP 860
>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (Zinc finger C3HC-type protein 1) Length = 502 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Frame = -3 Query: 237 GSIQAEKSQGQASKSRQDRGKSSPL------LLKPRTRARALTDPPGAGTP 103 GS QAEKS G + SSP+ P TR R +T G G P Sbjct: 337 GSEQAEKSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTRPVTRSMGTGDP 387
>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (hNIPA) (Zinc finger C3HC-type protein 1) Length = 502 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Frame = -3 Query: 237 GSIQAEKSQGQASKSRQDRGKSSPL------LLKPRTRARALTDPPGAG-TPG 100 GS QAEKS G + SSP+ P TR R +T G G TPG Sbjct: 337 GSEQAEKSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTRPVTRSMGTGDTPG 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,412,754 Number of Sequences: 219361 Number of extensions: 1652894 Number of successful extensions: 5936 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5357 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5922 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
